Rh1AG097300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001283
Physical Location & Seq
Reverse (-)
16996416 .. 16998291
1876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG097300.1

Sequence Viewer

Length: 258 bp
ATGGCGAGATTACGGGCATTCAGTTCGAGTACTTGGGAAGATAAGGGTTCCAGTCGTTGTCAGGGTCCTTTCTGCGTTATCTGTGGTAGACTGATCTGTGTTGCCTCAAACCCTAGTCTCCTTGCAGCAACTTCTGGAATAGTGAAACCTTGGAACTCGCCTTCTGCTAAAATGGGATTTCTTAGGTATCTGTCGATGCTCAAGAGTCGTGCCACTGGATACAAAAAGAAGGTGTGGAGAAAGAAGCTAAATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.39

Weight (kDa)

10.61

Isoelectric Point (pI)

28.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 88
AfaI GTAC 1 cut(s) 31
AluBI AGCT 1 cut(s) 247
AluI AGCT 1 cut(s) 247
Alw26I GTCTC 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 65
AvaII GGWCC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 137
BcgI CGANNNNNNTGC 2 cut(s) 6, 40
BciVI GTATCC 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 1 cut(s) 114
BfuI GTATCC 1 cut(s) 212
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
BmcAI AGTACT 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 2 cut(s) 49, 66
BmsI GCATC 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 149
Bse1I ACTGG 2 cut(s) 51, 220
BseDI CCNNGG 1 cut(s) 149
BseNI ACTGG 2 cut(s) 51, 220
BseXI GCAGC 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 122
BsmI GAATGC 1 cut(s) 17
Bsp143I GATC 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 49, 66
BsrI ACTGG 2 cut(s) 51, 220
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 149
BstDEI CTNAG 1 cut(s) 182
BstKTI GATC 1 cut(s) 96
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 137
BsuI GTATCC 1 cut(s) 212
BtsIMutI CAGTG 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 30
CviJI RGCY 2 cut(s) 247, 255
CviKI_1 RGCY 2 cut(s) 247, 255
CviQI GTAC 1 cut(s) 30
DdeI CTNAG 1 cut(s) 182
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 65
EcoO109I RGGNCCY 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 149
ErhI CCWWGG 1 cut(s) 149
FblI GTMKAC 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 1 cut(s) 114
GluI GCNGC 1 cut(s) 126
HinfI GANTC 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 89
Hpy188III TCNNGA 2 cut(s) 135, 202
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 2 cut(s) 171, 223
HpyCH4V TGCA 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 182
Kzo9I GATC 1 cut(s) 93
LpnPI CCDG 4 cut(s) 47, 64, 120, 201
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 1 cut(s) 186
MaeI CTAG 1 cut(s) 114
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 1 cut(s) 50
MlyI GAGTC 1 cut(s) 214
MnlI CCTC 1 cut(s) 115
Mva1269I GAATGC 1 cut(s) 17
NdeII GATC 1 cut(s) 93
NlaIV GGNNCC 2 cut(s) 49, 66
PctI GAATGC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PpuMI RGGWCCY 1 cut(s) 65
Psp5II RGGWCCY 1 cut(s) 65
PspN4I GGNNCC 2 cut(s) 49, 66
PspPI GGNCC 1 cut(s) 65
PspPPI RGGWCCY 1 cut(s) 65
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 1 cut(s) 93
Sau96I GGNCC 1 cut(s) 65
ScaI AGTACT 1 cut(s) 31
SchI GAGTC 1 cut(s) 214
SetI ASST 4 cut(s) 151, 188, 234, 249
SfaNI GCATC 1 cut(s) 186
SinI GGWCC 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
SspMI CTAG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 149
TaqI TCGA 2 cut(s) 26, 194
TatI WGTACW 1 cut(s) 29
TscAI CASTG 1 cut(s) 220
TseI GCWGC 1 cut(s) 125
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 88
XspI CTAG 1 cut(s) 114
ZrmI AGTACT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.