Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Forward (+)

33446788 .. 33459459

Gene Structure 12672 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018663

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGTTTTTGCTAAGATAGACAATCTGTTTTCCAATGTTAATAGAGTTGGATTGCCACTGGTGTTCAAGTCAAGCTTTGACAAAGCTAACCGTACATCCTCAAAATCATTCCGCGGCCCTGGCATGGCTGAAGGGTTAAAGATCCTTGAGAAGGTTAAAATAGCTTATGACCTCCCTATAGTTACAGATGTACACGAATCTATACAGTGTGGAGAAGTTGGCAAAGTTGCAGATATCATTCAGCTTCCTGCATTTTTATGCCGTCAGACAGATCTTCTAGTTGCAGCAGCCAAGACTGGAAAGATTGTCAATATTAAGAAGGGTCAATTCTGTGCTCTGTTTACTCTGTCTCTCTCTCTAGTCATGGTAAATTCTGCTGAGAAGATTCGACTGGCAGGAAATCCAAATGTGATGGTTTGTGAGAGGGATTTATTATTAAATGATTTAGTTGTTGATCCGCGTAATTTGGAGTGGATCAGAGAAGCTAATTGTCCTGTTGTTGCTGATGTCACACTTGCATTGCAACAGCCTGCTGGGAGAAAGGTACATGATGATCCTTCTAATGCGCCAGTTGATGGTCCAACCCAATGGCCGTTGCGCCATTTGGAGGAACTACTGGTGGAGCTTATTGCAATTGCTAGGGTAAGCAAGGGGAAGCAACGCTTCAACATTGATCTCTCACCCTATCGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

232

Amino Acids

25.5

Weight (kDa)

8.58

Isoelectric Point (pI)

22.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	12 - 181	2.8e-34	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	575
AccII	CGCG	2 cut(s)	114, 460
AciI	CCGC	3 cut(s)	112, 114, 458
AclWI	GGATC	4 cut(s)	136, 449, 482, 548
AcoI	YGGCCR	1 cut(s)	590
AcsI	RAATTY	1 cut(s)	370
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	3 cut(s)	94, 192, 546
AfiI	CCNNNNNNNGG	4 cut(s)	124, 151, 575, 607
AgsI	TTSAA	2 cut(s)	67, 667
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	6 cut(s)	75, 86, 164, 244, 485, 625
AluI	AGCT	6 cut(s)	75, 86, 164, 244, 485, 625
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	1 cut(s)	354
AlwI	GGATC	4 cut(s)	136, 449, 482, 548
AoxI	GGCC	2 cut(s)	115, 590
ApeKI	GCWGC	2 cut(s)	284, 287
ApoI	RAATTY	1 cut(s)	370
AspLEI	GCGC	2 cut(s)	568, 600
AspS9I	GGNCC	2 cut(s)	116, 578
AsuHPI	GGTGA	1 cut(s)	672
AvaII	GGWCC	1 cut(s)	578
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	2 cut(s)	296, 299
BccI	CCATC	2 cut(s)	406, 569
BceAI	ACGGC	2 cut(s)	246, 577
BciT130I	CCWGG	1 cut(s)	120
BcoDI	GTCTC	1 cut(s)	354
BfaI	CTAG	3 cut(s)	278, 359, 639
BfmI	CTRYAG	1 cut(s)	177
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	3 cut(s)	115, 285, 288
BlsI	GCNGC	3 cut(s)	116, 286, 289
Bme1390I	CCNGG	1 cut(s)	120
Bme18I	GGWCC	1 cut(s)	578
BmgT120I	GGNCC	2 cut(s)	116, 578
BmrFI	CCNGG	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	112, 118
Bsc4I	CCNNNNNNNGG	4 cut(s)	124, 151, 575, 607
Bse1I	ACTGG	5 cut(s)	63, 301, 396, 569, 621
Bse3DI	GCAATG	1 cut(s)	518
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	2 cut(s)	112, 118
BseGI	GGATG	1 cut(s)	95
BseLI	CCNNNNNNNGG	4 cut(s)	124, 151, 575, 607
BseMI	GCAATG	1 cut(s)	518
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	5 cut(s)	63, 301, 396, 569, 621
BseXI	GCAGC	2 cut(s)	296, 299
BseYI	CCCAGC	1 cut(s)	533
Bsh1236I	CGCG	2 cut(s)	114, 460
BshFI	GGCC	2 cut(s)	117, 592
BsiHKAI	GWGCWC	1 cut(s)	337
BslI	CCNNNNNNNGG	4 cut(s)	124, 151, 575, 607
BsmAI	GTCTC	1 cut(s)	354
BsnI	GGCC	2 cut(s)	117, 592
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp1407I	TGTACA	1 cut(s)	190
Bsp143I	GATC	6 cut(s)	141, 271, 454, 474, 553, 673
BspACI	CCGC	3 cut(s)	112, 114, 458
BspANI	GGCC	2 cut(s)	117, 592
BspCNI	CTCAG	1 cut(s)	370
BspFNI	CGCG	2 cut(s)	114, 460
BspPI	GGATC	4 cut(s)	136, 449, 482, 548
BsrDI	GCAATG	1 cut(s)	518
BsrGI	TGTACA	1 cut(s)	190
BsrI	ACTGG	5 cut(s)	63, 301, 396, 569, 621
BssECI	CCNNGG	2 cut(s)	112, 118
BssMI	GATC	6 cut(s)	141, 271, 454, 474, 553, 673
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	2 cut(s)	92, 207
BstAUI	TGTACA	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	531
BstDEI	CTNAG	2 cut(s)	12, 378
BstDSI	CCRYGG	1 cut(s)	112
BstENI	CCTNNNNNAGG	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	95
BstFNI	CGCG	2 cut(s)	114, 460
BstHHI	GCGC	2 cut(s)	568, 600
BstKTI	GATC	6 cut(s)	144, 274, 457, 477, 556, 676
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	6 cut(s)	141, 271, 454, 474, 553, 673
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	118
BstSFI	CTRYAG	1 cut(s)	177
BstUI	CGCG	2 cut(s)	114, 460
BstV1I	GCAGC	2 cut(s)	296, 299
BstX2I	RGATCY	2 cut(s)	141, 271
BstXI	CCANNNNNNTGG	1 cut(s)	588
BstYI	RGATCY	2 cut(s)	141, 271
BsuRI	GGCC	2 cut(s)	117, 592
BtgI	CCRYGG	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	95
BtsIMutI	CAGTG	2 cut(s)	56, 212
Cac8I	GCNNGC	1 cut(s)	531
CfoI	GCGC	2 cut(s)	568, 600
Cfr13I	GGNCC	2 cut(s)	116, 578
Cfr42I	CCGCGG	1 cut(s)	115
Csp6I	GTAC	3 cut(s)	93, 191, 545
CviAII	CATG	3 cut(s)	124, 364, 548
CviQI	GTAC	3 cut(s)	93, 191, 545
DdeI	CTNAG	2 cut(s)	12, 378
DpnI	GATC	6 cut(s)	143, 273, 456, 476, 555, 675
DpnII	GATC	6 cut(s)	141, 271, 454, 474, 553, 673
EaeI	YGGCCR	1 cut(s)	590
Eco32I	GATATC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	578
Eco57I	CTGAAG	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	118
EcoRV	GATATC	1 cut(s)	235
FaeI	CATG	3 cut(s)	127, 367, 551
FaiI	YATR	7 cut(s)	125, 168, 179, 203, 259, 365, 549
FalI	AAGNNNNNCTT	4 cut(s)	59, 91, 647, 679
FatI	CATG	3 cut(s)	123, 363, 547
Fnu4HI	GCNGC	3 cut(s)	115, 285, 288
FokI	GGATG	1 cut(s)	82
Fsp4HI	GCNGC	3 cut(s)	115, 285, 288
FspBI	CTAG	3 cut(s)	278, 359, 639
GlaI	GCGC	2 cut(s)	567, 599
GluI	GCNGC	3 cut(s)	115, 285, 288
GsaI	CCCAGC	1 cut(s)	537
HaeIII	GGCC	2 cut(s)	117, 592
HhaI	GCGC	2 cut(s)	568, 600
Hin1II	CATG	3 cut(s)	127, 367, 551
Hin6I	GCGC	2 cut(s)	566, 598
HinP1I	GCGC	2 cut(s)	566, 598
HindIII	AAGCTT	1 cut(s)	73
HinfI	GANTC	2 cut(s)	197, 385
HphI	GGTGA	1 cut(s)	672
Hpy166II	GTNNAC	2 cut(s)	193, 342
Hpy188I	TCNGA	2 cut(s)	267, 479
Hpy188III	TCNNGA	1 cut(s)	689
Hpy8I	GTNNAC	2 cut(s)	193, 342
HpyAV	CCTTC	4 cut(s)	125, 145, 313, 567
HpyCH4III	ACNGT	2 cut(s)	92, 207
HpyCH4V	TGCA	6 cut(s)	230, 251, 284, 518, 523, 632
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpyF3I	CTNAG	2 cut(s)	12, 378
Hsp92II	CATG	3 cut(s)	127, 367, 551
HspAI	GCGC	2 cut(s)	566, 598
KspI	CCGCGG	1 cut(s)	115
Kzo9I	GATC	6 cut(s)	141, 271, 454, 474, 553, 673
LmnI	GCTCC	1 cut(s)	622
Lsp1109I	GCAGC	2 cut(s)	296, 299
MaeI	CTAG	3 cut(s)	278, 359, 639
MaeIII	GTNAC	2 cut(s)	181, 508
MalI	GATC	6 cut(s)	143, 273, 456, 476, 555, 675
MboI	GATC	6 cut(s)	141, 271, 454, 474, 553, 673
MboII	GAAGA	2 cut(s)	266, 394
MfeI	CAATTG	1 cut(s)	633
MflI	RGATCY	2 cut(s)	141, 271
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	5 cut(s)	326, 370, 463, 487, 633
MmeI	TCCRAC	2 cut(s)	28, 605
MnlI	CCTC	4 cut(s)	109, 182, 417, 601
MseI	TTAA	5 cut(s)	39, 137, 156, 315, 437
MslI	CAYNNNNRTG	1 cut(s)	256
MspA1I	CMGCKG	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	120
MunI	CAATTG	1 cut(s)	633
MvaI	CCWGG	1 cut(s)	120
MvnI	CGCG	2 cut(s)	114, 460
MwoI	GCNNNNNNNGC	1 cut(s)	120
NdeII	GATC	6 cut(s)	141, 271, 454, 474, 553, 673
NlaIII	CATG	3 cut(s)	127, 367, 551
NmuCI	GTSAC	1 cut(s)	508
PfeI	GAWTC	2 cut(s)	197, 385
PflMI	CCANNNNNTGG	1 cut(s)	575
PkrI	GCNGC	3 cut(s)	116, 286, 289
Psp6I	CCWGG	1 cut(s)	118
PspFI	CCCAGC	1 cut(s)	533
PspGI	CCWGG	1 cut(s)	118
PspPI	GGNCC	2 cut(s)	116, 578
PsuI	RGATCY	2 cut(s)	141, 271
RsaI	GTAC	3 cut(s)	94, 192, 546
RsaNI	GTAC	3 cut(s)	93, 191, 545
RseI	CAYNNNNRTG	1 cut(s)	256
SacII	CCGCGG	1 cut(s)	115
SaqAI	TTAA	5 cut(s)	39, 137, 156, 315, 437
SatI	GCNGC	3 cut(s)	115, 285, 288
Sau3AI	GATC	6 cut(s)	141, 271, 454, 474, 553, 673
Sau96I	GGNCC	2 cut(s)	116, 578
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	9 cut(s)	77, 88, 156, 166, 174, 246, 487, 546, 627
SfcI	CTRYAG	1 cut(s)	177
Sfr303I	CCGCGG	1 cut(s)	115
SgrBI	CCGCGG	1 cut(s)	115
SinI	GGWCC	1 cut(s)	578
SmiMI	CAYNNNNRTG	1 cut(s)	256
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	5 cut(s)	326, 370, 463, 487, 633
SsiI	CCGC	3 cut(s)	112, 114, 458
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	3 cut(s)	278, 359, 639
StyD4I	CCNGG	1 cut(s)	118
TaaI	ACNGT	2 cut(s)	92, 207
TaqI	TCGA	1 cut(s)	388
TasI	AATT	5 cut(s)	326, 370, 463, 487, 633
TatI	WGTACW	1 cut(s)	190
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	2 cut(s)	197, 385
Tru1I	TTAA	5 cut(s)	39, 137, 156, 315, 437
Tru9I	TTAA	5 cut(s)	39, 137, 156, 315, 437
TscAI	CASTG	2 cut(s)	63, 212
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	2 cut(s)	284, 287
Tsp45I	GTSAC	1 cut(s)	508
TspRI	CASTG	2 cut(s)	63, 212
Van91I	CCANNNNNTGG	1 cut(s)	575
VpaK11BI	GGWCC	1 cut(s)	578
XagI	CCTNNNNNAGG	1 cut(s)	149
XapI	RAATTY	1 cut(s)	370
XspI	CTAG	3 cut(s)	278, 359, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.