Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Forward (+)

17585850 .. 17595172

Gene Structure 9323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG167400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGGAAGAGCCCATAATTTAGTTGCTCGTCGGTGGCAGAAACCCACAGAATCAGATAAAAGGAAGAAAGGTTGTTGTCTCGTCTTTGCTCTACTCGATCACTCACTCAAGCTATCACTGTGTCAATTCAGCTCAGTGGCAGATATGGAATCATCAGCTTTGTTATACAATCAGCTCAAGACAGCAGAGCCGTTTTTCTTATTAGCGGGTCCGAATGTGATTGAATCCGAGGAGCACATTTTCCGGATGGCCAAGCACATAAAGACTATAGCGACAAAAGTTGGATTGCCACTGGTGTTCAAGTCAAGCTTTGACAAAGCTAACCGTACATCCTCAAAATCATTCCGCGGCCCTGGCATGGCTGAAGGGTTAAAGATCCTTGAGAAGGTTAAAATAGCTTATGACCTCCCTATAGTTACAGATGTACACGAATCTATACAGTGCGAAGAAGTTGGCAAAGTTGCAGATATCATTCAGATTCCTGCATTTTTATGCCGTCAGACCGATCTTCTAGTTGCAGCAGCCAAGACTGGAAAGATTGTCAATATTAAGAAGGGTCAATTCTGTGCACCTTCTGTCATGGTAAATTCTGCTGAGAAGATTAGACTGGCAGGAAATCCAAATGTGATGGTTTGTGAGAGGGGAACTATGTTTGGTTATAATGATTTAATTGTTGATCCGCGTAATTTGGAGTGGATCAGAGAAGCTAATTGTCCTGTTGTTGCTGATGTTACACATGCATTGCAACAGCCTGCTGGGAGAAAGTTGGATGACGGAGGTGTTGCCAGTGGTGGTCTTCGTGAATTGATACCATGTATTGCAAGGACAGCAGTTGCTGTTGGGGTGGATGGAATTTTCATGGAGGTACATGATGATCCTTCTAATGCGCCAGTTGATGGTCCAACCCAATGGGTGAGTCATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

308

Amino Acids

33.6

Weight (kDa)

8.32

Isoelectric Point (pI)

29.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	63 - 303	1.3e-64	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	660
AccB7I	CCANNNNNTGG	1 cut(s)	896
AccII	CGCG	2 cut(s)	348, 682
AccIII	TCCGGA	1 cut(s)	243
AciI	CCGC	4 cut(s)	206, 346, 348, 680
AclWI	GGATC	4 cut(s)	370, 671, 704, 869
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	2 cut(s)	586, 852
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	3 cut(s)	328, 426, 867
AfiI	CCNNNNNNNGG	3 cut(s)	358, 385, 896
AgsI	TTSAA	2 cut(s)	224, 301
AjnI	CCWGG	1 cut(s)	352
AluBI	AGCT	8 cut(s)	112, 132, 158, 175, 309, 320, 398, 707
AluI	AGCT	8 cut(s)	112, 132, 158, 175, 309, 320, 398, 707
Alw21I	GWGCWC	2 cut(s)	237, 571
Alw26I	GTCTC	1 cut(s)	83
Alw44I	GTGCAC	1 cut(s)	567
AlwI	GGATC	4 cut(s)	370, 671, 704, 869
AlwNI	CAGNNNCTG	1 cut(s)	836
Aor13HI	TCCGGA	1 cut(s)	243
AoxI	GGCC	2 cut(s)	249, 349
ApaLI	GTGCAC	1 cut(s)	567
ApeKI	GCWGC	2 cut(s)	518, 521
ApoI	RAATTY	2 cut(s)	586, 852
AspLEI	GCGC	1 cut(s)	889
AspS9I	GGNCC	3 cut(s)	209, 350, 899
AsuHPI	GGTGA	1 cut(s)	925
AvaII	GGWCC	2 cut(s)	209, 899
BaeGI	GKGCMC	1 cut(s)	571
BalI	TGGCCA	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	788
Bbv12I	GWGCWC	2 cut(s)	237, 571
BbvI	GCAGC	2 cut(s)	530, 533
BccI	CCATC	4 cut(s)	241, 622, 842, 890
BceAI	ACGGC	2 cut(s)	175, 480
BciT130I	CCWGG	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	512
BfmI	CTRYAG	2 cut(s)	267, 411
BisI	GCNGC	3 cut(s)	349, 519, 522
BlsI	GCNGC	3 cut(s)	350, 520, 523
Bme1390I	CCNGG	1 cut(s)	354
Bme18I	GGWCC	2 cut(s)	209, 899
BmgT120I	GGNCC	3 cut(s)	209, 350, 899
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	788
BpuEI	CTTGAG	3 cut(s)	92, 161, 401
BsaJI	CCNNGG	3 cut(s)	228, 346, 352
BsaWI	WCCGGW	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	3 cut(s)	358, 385, 896
Bse1I	ACTGG	5 cut(s)	297, 535, 612, 786, 890
Bse3DI	GCAATG	1 cut(s)	740
BseAI	TCCGGA	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	3 cut(s)	228, 346, 352
BseGI	GGATG	4 cut(s)	252, 329, 775, 853
BseLI	CCNNNNNNNGG	3 cut(s)	358, 385, 896
BseMI	GCAATG	1 cut(s)	740
BseMII	CTCAG	2 cut(s)	147, 585
BseNI	ACTGG	5 cut(s)	297, 535, 612, 786, 890
BseRI	GAGGAG	1 cut(s)	245
BseSI	GKGCMC	1 cut(s)	571
BseXI	GCAGC	2 cut(s)	530, 533
BseYI	CCCAGC	1 cut(s)	755
Bsh1236I	CGCG	2 cut(s)	348, 682
BshFI	GGCC	2 cut(s)	251, 351
BsiHKAI	GWGCWC	2 cut(s)	237, 571
BsiSI	CCGG	1 cut(s)	244
BslI	CCNNNNNNNGG	3 cut(s)	358, 385, 896
BsmAI	GTCTC	1 cut(s)	83
BsnI	GGCC	2 cut(s)	251, 351
Bsp1286I	GDGCHC	3 cut(s)	13, 237, 571
Bsp13I	TCCGGA	1 cut(s)	243
Bsp1407I	TGTACA	1 cut(s)	424
Bsp143I	GATC	6 cut(s)	97, 375, 505, 676, 696, 874
BspACI	CCGC	4 cut(s)	206, 346, 348, 680
BspANI	GGCC	2 cut(s)	251, 351
BspCNI	CTCAG	2 cut(s)	146, 586
BspEI	TCCGGA	1 cut(s)	243
BspFNI	CGCG	2 cut(s)	348, 682
BspLI	GGNNCC	1 cut(s)	210
BspPI	GGATC	4 cut(s)	370, 671, 704, 869
BsrDI	GCAATG	1 cut(s)	740
BsrGI	TGTACA	1 cut(s)	424
BsrI	ACTGG	5 cut(s)	297, 535, 612, 786, 890
BssECI	CCNNGG	3 cut(s)	228, 346, 352
BssMI	GATC	6 cut(s)	97, 375, 505, 676, 696, 874
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	3 cut(s)	120, 326, 441
BstAUI	TGTACA	1 cut(s)	424
BstC8I	GCNNGC	1 cut(s)	753
BstDEI	CTNAG	2 cut(s)	133, 594
BstDSI	CCRYGG	1 cut(s)	346
BstENI	CCTNNNNNAGG	1 cut(s)	383
BstF5I	GGATG	4 cut(s)	252, 329, 775, 853
BstFNI	CGCG	2 cut(s)	348, 682
BstHHI	GCGC	1 cut(s)	889
BstKTI	GATC	6 cut(s)	100, 378, 508, 679, 699, 877
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	6 cut(s)	97, 375, 505, 676, 696, 874
BstMWI	GCNNNNNNNGC	2 cut(s)	354, 827
BstNI	CCWGG	1 cut(s)	354
BstNSI	RCATGY	1 cut(s)	740
BstSCI	CCNGG	1 cut(s)	352
BstSFI	CTRYAG	2 cut(s)	267, 411
BstSLI	GKGCMC	1 cut(s)	571
BstUI	CGCG	2 cut(s)	348, 682
BstV1I	GCAGC	2 cut(s)	530, 533
BstV2I	GAAGAC	1 cut(s)	788
BstX2I	RGATCY	1 cut(s)	375
BstXI	CCANNNNNNTGG	1 cut(s)	909
BstYI	RGATCY	1 cut(s)	375
BsuRI	GGCC	2 cut(s)	251, 351
BtgI	CCRYGG	1 cut(s)	346
BtsCI	GGATG	4 cut(s)	252, 329, 775, 853
BtsIMutI	CAGTG	5 cut(s)	116, 141, 290, 446, 793
Cac8I	GCNNGC	1 cut(s)	753
CaiI	CAGNNNCTG	1 cut(s)	836
CfoI	GCGC	1 cut(s)	889
Cfr13I	GGNCC	3 cut(s)	209, 350, 899
Cfr42I	CCGCGG	1 cut(s)	349
Csp6I	GTAC	3 cut(s)	327, 425, 866
CviAII	CATG	7 cut(s)	358, 580, 737, 813, 859, 869, 920
CviQI	GTAC	3 cut(s)	327, 425, 866
DdeI	CTNAG	2 cut(s)	133, 594
DpnI	GATC	6 cut(s)	99, 377, 507, 678, 698, 876
DpnII	GATC	6 cut(s)	97, 375, 505, 676, 696, 874
EaeI	YGGCCR	1 cut(s)	249
Eco24I	GRGCYC	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	469
Eco47I	GGWCC	2 cut(s)	209, 899
Eco57I	CTGAAG	1 cut(s)	384
EcoNI	CCTNNNNNAGG	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	352
EcoRV	GATATC	1 cut(s)	469
EcoT22I	ATGCAT	1 cut(s)	742
EcoT38I	GRGCYC	1 cut(s)	13
FaeI	CATG	7 cut(s)	361, 583, 740, 816, 862, 872, 923
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FatI	CATG	7 cut(s)	357, 579, 736, 812, 858, 868, 919
FauI	CCCGC	1 cut(s)	199
Fnu4HI	GCNGC	3 cut(s)	349, 519, 522
FokI	GGATG	4 cut(s)	259, 316, 782, 860
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	3 cut(s)	349, 519, 522
FspBI	CTAG	1 cut(s)	512
GlaI	GCGC	1 cut(s)	888
GluI	GCNGC	3 cut(s)	349, 519, 522
GsaI	CCCAGC	1 cut(s)	759
HaeIII	GGCC	2 cut(s)	251, 351
HapII	CCGG	1 cut(s)	244
HhaI	GCGC	1 cut(s)	889
Hin1II	CATG	7 cut(s)	361, 583, 740, 816, 862, 872, 923
Hin6I	GCGC	1 cut(s)	887
HinP1I	GCGC	1 cut(s)	887
HindIII	AAGCTT	1 cut(s)	307
HinfI	GANTC	6 cut(s)	50, 149, 224, 431, 478, 916
HpaII	CCGG	1 cut(s)	244
HphI	GGTGA	1 cut(s)	925
Hpy166II	GTNNAC	2 cut(s)	427, 569
Hpy188I	TCNGA	6 cut(s)	55, 213, 229, 477, 501, 701
Hpy188III	TCNNGA	3 cut(s)	178, 244, 800
Hpy8I	GTNNAC	2 cut(s)	427, 569
Hpy99I	CGWCG	1 cut(s)	33
HpyAV	CCTTC	5 cut(s)	359, 379, 547, 582, 888
HpyCH4III	ACNGT	3 cut(s)	120, 326, 441
HpyCH4V	TGCA	7 cut(s)	464, 485, 518, 569, 740, 745, 821
HpyF10VI	GCNNNNNNNGC	2 cut(s)	354, 827
HpyF3I	CTNAG	2 cut(s)	133, 594
Hsp92II	CATG	7 cut(s)	361, 583, 740, 816, 862, 872, 923
HspAI	GCGC	1 cut(s)	887
Kpn2I	TCCGGA	1 cut(s)	243
KspI	CCGCGG	1 cut(s)	349
Kzo9I	GATC	6 cut(s)	97, 375, 505, 676, 696, 874
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	2 cut(s)	530, 533
MaeI	CTAG	1 cut(s)	512
MaeIII	GTNAC	2 cut(s)	415, 730
MalI	GATC	6 cut(s)	99, 377, 507, 678, 698, 876
MboI	GATC	6 cut(s)	97, 375, 505, 676, 696, 874
MboII	GAAGA	6 cut(s)	18, 76, 458, 500, 610, 788
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	3 cut(s)	13, 237, 571
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	9 cut(s)	16, 125, 560, 586, 669, 685, 709, 803, 852
MluNI	TGGCCA	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	925
MmeI	TCCRAC	3 cut(s)	262, 747, 926
MnlI	CCTC	6 cut(s)	223, 343, 416, 633, 770, 856
Mox20I	TGGCCA	1 cut(s)	251
Mph1103I	ATGCAT	1 cut(s)	742
MroI	TCCGGA	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	251
MseI	TTAA	4 cut(s)	371, 390, 549, 668
MslI	CAYNNNNRTG	1 cut(s)	490
Msp20I	TGGCCA	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	348
MspI	CCGG	1 cut(s)	244
MspR9I	CCNGG	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	354
MvnI	CGCG	2 cut(s)	348, 682
MwoI	GCNNNNNNNGC	2 cut(s)	354, 827
NdeII	GATC	6 cut(s)	97, 375, 505, 676, 696, 874
NlaIII	CATG	7 cut(s)	361, 583, 740, 816, 862, 872, 923
NlaIV	GGNNCC	1 cut(s)	210
NsiI	ATGCAT	1 cut(s)	742
NspI	RCATGY	1 cut(s)	740
PfeI	GAWTC	5 cut(s)	50, 149, 224, 431, 478
PflMI	CCANNNNNTGG	1 cut(s)	896
PkrI	GCNGC	3 cut(s)	350, 520, 523
PleI	GAGTC	1 cut(s)	924
PpsI	GAGTC	1 cut(s)	924
PsiI	TTATAA	1 cut(s)	660
Psp6I	CCWGG	1 cut(s)	352
PspFI	CCCAGC	1 cut(s)	755
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	3 cut(s)	209, 350, 899
PstNI	CAGNNNCTG	1 cut(s)	836
PsuI	RGATCY	1 cut(s)	375
RsaI	GTAC	3 cut(s)	328, 426, 867
RsaNI	GTAC	3 cut(s)	327, 425, 866
RseI	CAYNNNNRTG	1 cut(s)	490
SacII	CCGCGG	1 cut(s)	349
SaqAI	TTAA	4 cut(s)	371, 390, 549, 668
SatI	GCNGC	3 cut(s)	349, 519, 522
Sau3AI	GATC	6 cut(s)	97, 375, 505, 676, 696, 874
Sau96I	GGNCC	3 cut(s)	209, 350, 899
SchI	GAGTC	1 cut(s)	925
ScrFI	CCNGG	1 cut(s)	354
SduI	GDGCHC	3 cut(s)	13, 237, 571
SfcI	CTRYAG	2 cut(s)	267, 411
Sfr303I	CCGCGG	1 cut(s)	349
SgrBI	CCGCGG	1 cut(s)	349
SinI	GGWCC	2 cut(s)	209, 899
SmiMI	CAYNNNNRTG	1 cut(s)	490
SmlI	CTYRAG	3 cut(s)	107, 176, 380
SmoI	CTYRAG	3 cut(s)	107, 176, 380
Sse9I	AATT	9 cut(s)	16, 125, 560, 586, 669, 685, 709, 803, 852
SsiI	CCGC	4 cut(s)	206, 346, 348, 680
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	1 cut(s)	512
StyD4I	CCNGG	1 cut(s)	352
TaaI	ACNGT	3 cut(s)	120, 326, 441
TaqI	TCGA	1 cut(s)	96
TaqII	GACCGA	1 cut(s)	518
TasI	AATT	9 cut(s)	16, 125, 560, 586, 669, 685, 709, 803, 852
TatI	WGTACW	1 cut(s)	424
TauI	GCSGC	1 cut(s)	351
TfiI	GAWTC	5 cut(s)	50, 149, 224, 431, 478
Tru1I	TTAA	4 cut(s)	371, 390, 549, 668
Tru9I	TTAA	4 cut(s)	371, 390, 549, 668
TscAI	CASTG	5 cut(s)	123, 141, 297, 446, 793
TseI	GCWGC	2 cut(s)	518, 521
TspDTI	ATGAA	1 cut(s)	847
TspGWI	ACGGA	1 cut(s)	789
TspRI	CASTG	5 cut(s)	123, 141, 297, 446, 793
Van91I	CCANNNNNTGG	1 cut(s)	896
VneI	GTGCAC	1 cut(s)	567
VpaK11BI	GGWCC	2 cut(s)	209, 899
XagI	CCTNNNNNAGG	1 cut(s)	383
XapI	RAATTY	2 cut(s)	586, 852
XceI	RCATGY	1 cut(s)	740
XspI	CTAG	1 cut(s)	512
Zsp2I	ATGCAT	1 cut(s)	742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.