Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Reverse (-)

29121446 .. 29125811

Gene Structure 4366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG270300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAACTGTATGACGCAGTGGCTGATGTTTTCCTGTGGAGGGATAAGAAGCTATCAGGAGGTTGATAATTGCACAATGTTAGTCTTAATTAGTTTTGTTAGTTTAGCAAGATTGATACCTGCATATACTGAAAGTGTCAGCAATTCAGCATTGCAGCAGCTCATCTCAAGAGAAACAAATCCCCTCCAAAGTCAAGTGGGTCTGAATGTGATTGAATCCGAGGAGCAAATTTTCCGGATGGCCAACCACATAAAGACGATTGTGACAAAAGTTGGATTGCCACTGGTGTTCAAGTCAAGCTTTGACAAAGCTAACCGTACATCCTCAAAAACATTCCGGGGCCCTGACATGGCTGAAGGGTTAAAGATCCTTAAGAAGGTTAAAATAGCTTTTGACCTCCCTATAGTTACAAATGTACACGAGTTTATACAGAGGGATTTTGAACTCATACATATGGTGAATGATGTCTGGGATAGTGAGGCAAGAACAAATAAAGTTACTTTTGCACCAAACGACCAATACTGCCAAGCTAATTGGACATTCAGTATTATTCTAAAACTCACTCTAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

190

Amino Acids

21.61

Weight (kDa)

7.67

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	66 - 145	6.1e-17	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	127
AccIII	TCCGGA	1 cut(s)	234
AclWI	GGATC	1 cut(s)	361
AcoI	YGGCCR	1 cut(s)	240
AcsI	RAATTY	1 cut(s)	228
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	2 cut(s)	319, 417
AfiI	CCNNNNNNNGG	3 cut(s)	39, 349, 376
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	3 cut(s)	215, 292, 443
AluBI	AGCT	6 cut(s)	51, 160, 300, 311, 389, 530
AluI	AGCT	6 cut(s)	51, 160, 300, 311, 389, 530
AlwI	GGATC	1 cut(s)	361
AlwNI	CAGNNNCTG	1 cut(s)	22
Aor13HI	TCCGGA	1 cut(s)	234
AoxI	GGCC	2 cut(s)	240, 340
ApaI	GGGCCC	1 cut(s)	344
ApeKI	GCWGC	2 cut(s)	154, 157
ApoI	RAATTY	1 cut(s)	228
AspS9I	GGNCC	2 cut(s)	340, 341
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	469
BaeGI	GKGCMC	1 cut(s)	344
BalI	TGGCCA	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	344
BauI	CACGAG	1 cut(s)	419
BbvI	GCAGC	2 cut(s)	166, 169
BccI	CCATC	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	338
BfmI	CTRYAG	1 cut(s)	402
BfrI	CTTAAG	1 cut(s)	371
BfuAI	ACCTGC	1 cut(s)	127
BisI	GCNGC	2 cut(s)	155, 158
BlsI	GCNGC	2 cut(s)	156, 159
Bme1390I	CCNGG	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	340, 341
BmiI	GGNNCC	2 cut(s)	341, 342
BmrFI	CCNGG	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	151
BpuMI	CCSGG	1 cut(s)	338
BsaJI	CCNNGG	2 cut(s)	219, 337
BsaWI	WCCGGW	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 349, 376
Bse1I	ACTGG	1 cut(s)	288
Bse3DI	GCAATG	1 cut(s)	149
BseAI	TCCGGA	1 cut(s)	234
BseDI	CCNNGG	2 cut(s)	219, 337
BseGI	GGATG	2 cut(s)	243, 320
BseLI	CCNNNNNNNGG	3 cut(s)	39, 349, 376
BseMI	GCAATG	1 cut(s)	149
BseNI	ACTGG	1 cut(s)	288
BseRI	GAGGAG	1 cut(s)	236
BseSI	GKGCMC	1 cut(s)	344
BseXI	GCAGC	2 cut(s)	166, 169
BshFI	GGCC	2 cut(s)	242, 342
BsiSI	CCGG	2 cut(s)	235, 337
BslI	CCNNNNNNNGG	3 cut(s)	39, 349, 376
BsnI	GGCC	2 cut(s)	242, 342
Bsp120I	GGGCCC	1 cut(s)	340
Bsp1286I	GDGCHC	1 cut(s)	344
Bsp13I	TCCGGA	1 cut(s)	234
Bsp1407I	TGTACA	1 cut(s)	415
Bsp143I	GATC	1 cut(s)	366
BspANI	GGCC	2 cut(s)	242, 342
BspEI	TCCGGA	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	341, 342
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	361
BspTI	CTTAAG	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	149
BsrGI	TGTACA	1 cut(s)	415
BsrI	ACTGG	1 cut(s)	288
BssECI	CCNNGG	2 cut(s)	219, 337
BssMI	GATC	1 cut(s)	366
BssSI	CACGAG	1 cut(s)	419
Bst2BI	CACGAG	1 cut(s)	419
Bst4CI	ACNGT	2 cut(s)	8, 317
BstAFI	CTTAAG	1 cut(s)	371
BstAUI	TGTACA	1 cut(s)	415
BstENI	CCTNNNNNAGG	1 cut(s)	374
BstF5I	GGATG	2 cut(s)	243, 320
BstKTI	GATC	1 cut(s)	369
BstMBI	GATC	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	336
BstSFI	CTRYAG	1 cut(s)	402
BstSLI	GKGCMC	1 cut(s)	344
BstV1I	GCAGC	2 cut(s)	166, 169
BstX2I	RGATCY	1 cut(s)	366
BstYI	RGATCY	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	242, 342
BtsCI	GGATG	2 cut(s)	243, 320
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	2 cut(s)	23, 281
BveI	ACCTGC	1 cut(s)	127
CaiI	CAGNNNCTG	1 cut(s)	22
Cfr13I	GGNCC	2 cut(s)	340, 341
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	318, 416
CviAII	CATG	1 cut(s)	349
CviQI	GTAC	2 cut(s)	318, 416
DpnI	GATC	1 cut(s)	368
DpnII	GATC	1 cut(s)	366
EaeI	YGGCCR	1 cut(s)	240
Eco24I	GRGCYC	1 cut(s)	344
Eco57I	CTGAAG	1 cut(s)	375
EcoNI	CCTNNNNNAGG	1 cut(s)	374
EcoO109I	RGGNCCY	2 cut(s)	340, 341
EcoT38I	GRGCYC	1 cut(s)	344
FaeI	CATG	1 cut(s)	352
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FatI	CATG	1 cut(s)	348
FauNDI	CATATG	1 cut(s)	453
Fnu4HI	GCNGC	2 cut(s)	155, 158
FokI	GGATG	2 cut(s)	250, 307
FriOI	GRGCYC	1 cut(s)	344
Fsp4HI	GCNGC	2 cut(s)	155, 158
GluI	GCNGC	2 cut(s)	155, 158
HaeIII	GGCC	2 cut(s)	242, 342
HapII	CCGG	2 cut(s)	235, 337
HgaI	GACGC	1 cut(s)	22
Hin1II	CATG	1 cut(s)	352
HindIII	AAGCTT	1 cut(s)	298
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	2 cut(s)	235, 337
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	2 cut(s)	204, 220
Hpy188III	TCNNGA	3 cut(s)	56, 168, 235
Hpy8I	GTNNAC	1 cut(s)	418
HpyAV	CCTTC	2 cut(s)	350, 370
HpyCH4III	ACNGT	2 cut(s)	8, 317
HpyCH4V	TGCA	4 cut(s)	72, 122, 154, 506
Hsp92II	CATG	1 cut(s)	352
Kpn2I	TCCGGA	1 cut(s)	234
Kzo9I	GATC	1 cut(s)	366
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	8 cut(s)	41, 46, 132, 248, 269, 350, 357, 454
Lsp1109I	GCAGC	2 cut(s)	166, 169
MaeIII	GTNAC	3 cut(s)	262, 406, 496
MalI	GATC	1 cut(s)	368
MboI	GATC	1 cut(s)	366
MflI	RGATCY	1 cut(s)	366
MhlI	GDGCHC	1 cut(s)	344
MlsI	TGGCCA	1 cut(s)	242
MluCI	AATT	5 cut(s)	67, 87, 142, 228, 532
MluNI	TGGCCA	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	8 cut(s)	32, 52, 194, 214, 334, 407, 426, 472
Mox20I	TGGCCA	1 cut(s)	242
MroI	TCCGGA	1 cut(s)	234
MscI	TGGCCA	1 cut(s)	242
MseI	TTAA	4 cut(s)	86, 362, 372, 381
MslI	CAYNNNNRTG	1 cut(s)	452
Msp20I	TGGCCA	1 cut(s)	242
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	2 cut(s)	235, 337
MspR9I	CCNGG	1 cut(s)	338
NciI	CCSGG	1 cut(s)	338
NdeI	CATATG	1 cut(s)	453
NdeII	GATC	1 cut(s)	366
NlaIII	CATG	1 cut(s)	352
NlaIV	GGNNCC	2 cut(s)	341, 342
NmuCI	GTSAC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	156, 159
PspN4I	GGNNCC	2 cut(s)	341, 342
PspOMI	GGGCCC	1 cut(s)	340
PspPI	GGNCC	2 cut(s)	340, 341
PstNI	CAGNNNCTG	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	366
RsaI	GTAC	2 cut(s)	319, 417
RsaNI	GTAC	2 cut(s)	318, 416
RseI	CAYNNNNRTG	1 cut(s)	452
SaqAI	TTAA	4 cut(s)	86, 362, 372, 381
SatI	GCNGC	2 cut(s)	155, 158
Sau3AI	GATC	1 cut(s)	366
Sau96I	GGNCC	2 cut(s)	340, 341
ScrFI	CCNGG	1 cut(s)	338
SduI	GDGCHC	1 cut(s)	344
SfcI	CTRYAG	1 cut(s)	402
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	2 cut(s)	166, 371
SmoI	CTYRAG	2 cut(s)	166, 371
Sse9I	AATT	5 cut(s)	67, 87, 142, 228, 532
StyD4I	CCNGG	1 cut(s)	336
TaaI	ACNGT	2 cut(s)	8, 317
TasI	AATT	5 cut(s)	67, 87, 142, 228, 532
TatI	WGTACW	1 cut(s)	415
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	4 cut(s)	86, 362, 372, 381
Tru9I	TTAA	4 cut(s)	86, 362, 372, 381
TscAI	CASTG	2 cut(s)	23, 288
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	2 cut(s)	154, 157
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	23, 288
Vha464I	CTTAAG	1 cut(s)	371
XagI	CCTNNNNNAGG	1 cut(s)	374
XapI	RAATTY	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.