Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Reverse (-)

16993702 .. 16995857

Gene Structure 2156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG097200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTCTGTAGAACCGTTTTTCTTATTAGTGGGTCCGAATGTGATTGAATCCAAGGAGCATGTTTTCCGGATGGCCAAGCACATAAAGACTATTGCGACAAAAGTTGGATTGCCACTGGTGTTCAAGTCAAGCTTTGACAAAGCTAACCGTACATCCTCAAAATCATTCCGGGGCCCTGGCATGGCTGAAGGGTTAAAGATCCTTAAGAAGGTTAAAATAGCTTTTGACCTCCCTATAGTTACAAATGTACACGAGTTTATACAGACTCGCTCAGCTGTATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

94

Amino Acids

10.54

Weight (kDa)

10.23

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	5 - 90	4.6e-22	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	66
AclWI	GGATC	1 cut(s)	193
AcoI	YGGCCR	1 cut(s)	72
AcuI	CTGAAG	1 cut(s)	207
AfaI	GTAC	2 cut(s)	151, 249
AfiI	CCNNNNNNNGG	2 cut(s)	181, 208
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	47, 124
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	4 cut(s)	132, 143, 221, 275
AluI	AGCT	4 cut(s)	132, 143, 221, 275
AlwI	GGATC	1 cut(s)	193
Aor13HI	TCCGGA	1 cut(s)	66
AoxI	GGCC	2 cut(s)	72, 172
ApaI	GGGCCC	1 cut(s)	176
AspS9I	GGNCC	3 cut(s)	32, 172, 173
AsuC2I	CCSGG	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	32
BaeGI	GKGCMC	1 cut(s)	176
BalI	TGGCCA	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	176
BauI	CACGAG	1 cut(s)	251
BccI	CCATC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	177
BcnI	CCSGG	1 cut(s)	170
BfmI	CTRYAG	2 cut(s)	6, 234
BfrI	CTTAAG	1 cut(s)	203
BlpI	GCTNAGC	1 cut(s)	271
Bme1390I	CCNGG	2 cut(s)	170, 177
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	3 cut(s)	32, 172, 173
BmiI	GGNNCC	3 cut(s)	33, 173, 174
BmrFI	CCNGG	2 cut(s)	170, 177
Bpu1102I	GCTNAGC	1 cut(s)	271
BpuMI	CCSGG	1 cut(s)	170
BsaJI	CCNNGG	3 cut(s)	51, 169, 175
BsaWI	WCCGGW	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 208
Bse1I	ACTGG	1 cut(s)	120
BseAI	TCCGGA	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	3 cut(s)	51, 169, 175
BseGI	GGATG	2 cut(s)	75, 152
BseLI	CCNNNNNNNGG	2 cut(s)	181, 208
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	120
BseSI	GKGCMC	1 cut(s)	176
BshFI	GGCC	2 cut(s)	74, 174
BsiSI	CCGG	2 cut(s)	67, 169
BslI	CCNNNNNNNGG	2 cut(s)	181, 208
BsnI	GGCC	2 cut(s)	74, 174
Bsp120I	GGGCCC	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp13I	TCCGGA	1 cut(s)	66
Bsp1407I	TGTACA	1 cut(s)	247
Bsp143I	GATC	1 cut(s)	198
Bsp1720I	GCTNAGC	1 cut(s)	271
BspANI	GGCC	2 cut(s)	74, 174
BspCNI	CTCAG	1 cut(s)	284
BspEI	TCCGGA	1 cut(s)	66
BspLI	GGNNCC	3 cut(s)	33, 173, 174
BspPI	GGATC	1 cut(s)	193
BspTI	CTTAAG	1 cut(s)	203
BsrGI	TGTACA	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	3 cut(s)	51, 169, 175
BssMI	GATC	1 cut(s)	198
BssSI	CACGAG	1 cut(s)	251
BssT1I	CCWWGG	1 cut(s)	51
Bst2BI	CACGAG	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	2 cut(s)	15, 149
BstAFI	CTTAAG	1 cut(s)	203
BstAUI	TGTACA	1 cut(s)	247
BstDEI	CTNAG	1 cut(s)	271
BstENI	CCTNNNNNAGG	1 cut(s)	206
BstF5I	GGATG	2 cut(s)	75, 152
BstKTI	GATC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	198
BstNI	CCWGG	1 cut(s)	177
BstNSI	RCATGY	1 cut(s)	62
BstSCI	CCNGG	2 cut(s)	168, 175
BstSFI	CTRYAG	2 cut(s)	6, 234
BstSLI	GKGCMC	1 cut(s)	176
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	74, 174
BtsCI	GGATG	2 cut(s)	75, 152
BtsIMutI	CAGTG	1 cut(s)	113
Cfr13I	GGNCC	3 cut(s)	32, 172, 173
Csp6I	GTAC	2 cut(s)	150, 248
CviAII	CATG	2 cut(s)	59, 181
CviJI	RGCY	7 cut(s)	74, 132, 143, 174, 185, 221, 275
CviKI_1	RGCY	7 cut(s)	74, 132, 143, 174, 185, 221, 275
CviQI	GTAC	2 cut(s)	150, 248
DdeI	CTNAG	1 cut(s)	271
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	207
EcoNI	CCTNNNNNAGG	1 cut(s)	206
EcoO109I	RGGNCCY	2 cut(s)	172, 173
EcoRII	CCWGG	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	2 cut(s)	62, 184
FaiI	YATR	6 cut(s)	60, 83, 182, 236, 260, 280
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FatI	CATG	2 cut(s)	58, 180
FokI	GGATG	2 cut(s)	82, 139
FriOI	GRGCYC	1 cut(s)	176
HaeIII	GGCC	2 cut(s)	74, 174
HapII	CCGG	2 cut(s)	67, 169
Hin1II	CATG	2 cut(s)	62, 184
HindIII	AAGCTT	1 cut(s)	130
HinfI	GANTC	2 cut(s)	47, 265
HpaII	CCGG	2 cut(s)	67, 169
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	1 cut(s)	67
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	2 cut(s)	182, 202
HpyCH4III	ACNGT	2 cut(s)	15, 149
HpyF3I	CTNAG	1 cut(s)	271
Hsp92II	CATG	2 cut(s)	62, 184
Kpn2I	TCCGGA	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	5 cut(s)	80, 101, 162, 182, 189
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	176
MlsI	TGGCCA	1 cut(s)	74
MluNI	TGGCCA	1 cut(s)	74
MlyI	GAGTC	1 cut(s)	259
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	2 cut(s)	166, 239
Mox20I	TGGCCA	1 cut(s)	74
MroI	TCCGGA	1 cut(s)	66
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	3 cut(s)	194, 204, 213
Msp20I	TGGCCA	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	275
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	2 cut(s)	67, 169
MspR9I	CCNGG	2 cut(s)	170, 177
MvaI	CCWGG	1 cut(s)	177
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	1 cut(s)	198
NlaIII	CATG	2 cut(s)	62, 184
NlaIV	GGNNCC	3 cut(s)	33, 173, 174
NspI	RCATGY	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	47
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	3 cut(s)	33, 173, 174
PspOMI	GGGCCC	1 cut(s)	172
PspPI	GGNCC	3 cut(s)	32, 172, 173
PsuI	RGATCY	1 cut(s)	198
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	2 cut(s)	151, 249
RsaNI	GTAC	2 cut(s)	150, 248
SaqAI	TTAA	3 cut(s)	194, 204, 213
Sau3AI	GATC	1 cut(s)	198
Sau96I	GGNCC	3 cut(s)	32, 172, 173
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	2 cut(s)	170, 177
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	6 cut(s)	134, 145, 213, 223, 231, 277
SfcI	CTRYAG	2 cut(s)	6, 234
SinI	GGWCC	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
StyD4I	CCNGG	2 cut(s)	168, 175
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	15, 149
TatI	WGTACW	1 cut(s)	247
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	3 cut(s)	194, 204, 213
Tru9I	TTAA	3 cut(s)	194, 204, 213
TscAI	CASTG	1 cut(s)	120
TspRI	CASTG	1 cut(s)	120
Vha464I	CTTAAG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	32
XagI	CCTNNNNNAGG	1 cut(s)	206
XceI	RCATGY	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.