Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Forward (+)

83266756 .. 83278149

Gene Structure 11394 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG528700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGGTCTGAATGTGATTGAATCCGAGGAGCAAATTTTCCGGATGGCCAAGCACATAAAGACTATTGCGACAAAAGTTGGATTGCCACTGGTGTTCAAGTCAAGCTTTGACAAAGCTAACCGTACATCCTCAAAATCATTCCGAGGCCCTGGCATGGCTGAAGGGTTAAAGATCCTTAAGAAGGTTAAAATAGCTTTTGACCTCCCTATAGCTACAAATGTACACGAGTTTATACAGGCACAAAGAAAAATAGTCAAGTTCACGCAGCTTCAACCTCGTGATTTCCGATTTCTCATCACTGACATAGAGAACCGGACTGTTGCCGCCTTGGTGATACCCAGCCTTTCCGATGCTTACACCTACAATCCACAACAATTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

127

Amino Acids

14.36

Weight (kDa)

9.99

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	1 - 81	4.9e-19	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	39
AciI	CCGC	1 cut(s)	324
AclWI	GGATC	1 cut(s)	166
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	33
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	2 cut(s)	124, 222
AfiI	CCNNNNNNNGG	2 cut(s)	154, 181
AflII	CTTAAG	1 cut(s)	176
AgsI	TTSAA	3 cut(s)	20, 97, 272
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	5 cut(s)	105, 116, 194, 212, 268
AluI	AGCT	5 cut(s)	105, 116, 194, 212, 268
AlwI	GGATC	1 cut(s)	166
Aor13HI	TCCGGA	1 cut(s)	39
AoxI	GGCC	2 cut(s)	45, 145
ApeKI	GCWGC	1 cut(s)	265
ApoI	RAATTY	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	343
BalI	TGGCCA	1 cut(s)	47
BauI	CACGAG	2 cut(s)	224, 276
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	207
BfrI	CTTAAG	1 cut(s)	176
BisI	GCNGC	2 cut(s)	266, 324
BlsI	GCNGC	2 cut(s)	267, 325
Bme1390I	CCNGG	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	146
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	340
BsaJI	CCNNGG	4 cut(s)	24, 142, 148, 327
BsaWI	WCCGGW	2 cut(s)	39, 312
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 181
Bse1I	ACTGG	1 cut(s)	93
BseAI	TCCGGA	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	4 cut(s)	24, 142, 148, 327
BseGI	GGATG	2 cut(s)	48, 125
BseLI	CCNNNNNNNGG	2 cut(s)	154, 181
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	277
BseYI	CCCAGC	1 cut(s)	338
BshFI	GGCC	2 cut(s)	47, 147
BsiSI	CCGG	2 cut(s)	40, 313
BslI	CCNNNNNNNGG	2 cut(s)	154, 181
BsnI	GGCC	2 cut(s)	47, 147
Bsp13I	TCCGGA	1 cut(s)	39
Bsp1407I	TGTACA	1 cut(s)	220
Bsp143I	GATC	1 cut(s)	171
BspACI	CCGC	1 cut(s)	324
BspANI	GGCC	2 cut(s)	47, 147
BspEI	TCCGGA	1 cut(s)	39
BspPI	GGATC	1 cut(s)	166
BspTI	CTTAAG	1 cut(s)	176
BsrGI	TGTACA	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	93
BssECI	CCNNGG	4 cut(s)	24, 142, 148, 327
BssMI	GATC	1 cut(s)	171
BssSI	CACGAG	2 cut(s)	224, 276
BssT1I	CCWWGG	1 cut(s)	327
Bst2BI	CACGAG	2 cut(s)	224, 276
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	122, 319
BstAFI	CTTAAG	1 cut(s)	176
BstAUI	TGTACA	1 cut(s)	220
BstENI	CCTNNNNNAGG	1 cut(s)	179
BstF5I	GGATG	2 cut(s)	48, 125
BstKTI	GATC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	171
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	47, 147
BtsCI	GGATG	2 cut(s)	48, 125
BtsIMutI	CAGTG	2 cut(s)	86, 297
Cfr13I	GGNCC	1 cut(s)	146
Csp6I	GTAC	2 cut(s)	123, 221
CspCI	CAANNNNNGTGG	1 cut(s)	357
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	9 cut(s)	47, 105, 116, 147, 158, 194, 212, 268, 342
CviKI_1	RGCY	9 cut(s)	47, 105, 116, 147, 158, 194, 212, 268, 342
CviQI	GTAC	2 cut(s)	123, 221
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
EaeI	YGGCCR	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	327
Eco57I	CTGAAG	1 cut(s)	180
EcoNI	CCTNNNNNAGG	1 cut(s)	179
EcoO109I	RGGNCCY	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	1 cut(s)	157
FaiI	YATR	5 cut(s)	56, 155, 209, 233, 305
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FatI	CATG	1 cut(s)	153
Fnu4HI	GCNGC	2 cut(s)	266, 324
FokI	GGATG	2 cut(s)	55, 112
Fsp4HI	GCNGC	2 cut(s)	266, 324
GluI	GCNGC	2 cut(s)	266, 324
GsaI	CCCAGC	1 cut(s)	342
HaeIII	GGCC	2 cut(s)	47, 147
HapII	CCGG	2 cut(s)	40, 313
Hin1II	CATG	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	103
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	2 cut(s)	40, 313
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	2 cut(s)	223, 261
Hpy188I	TCNGA	5 cut(s)	9, 25, 143, 287, 349
Hpy188III	TCNNGA	2 cut(s)	40, 278
Hpy8I	GTNNAC	2 cut(s)	223, 261
HpyAV	CCTTC	2 cut(s)	155, 175
HpyCH4III	ACNGT	2 cut(s)	122, 319
Hsp92II	CATG	1 cut(s)	157
Kpn2I	TCCGGA	1 cut(s)	39
Kzo9I	GATC	1 cut(s)	171
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	7 cut(s)	53, 74, 135, 162, 221, 326, 352
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	1 cut(s)	340
MalI	GATC	1 cut(s)	173
MboI	GATC	1 cut(s)	171
MfeI	CAATTG	1 cut(s)	374
MflI	RGATCY	1 cut(s)	171
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	2 cut(s)	33, 374
MluNI	TGGCCA	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	5 cut(s)	19, 137, 139, 212, 285
Mox20I	TGGCCA	1 cut(s)	47
MroI	TCCGGA	1 cut(s)	39
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	3 cut(s)	167, 177, 186
Msp20I	TGGCCA	1 cut(s)	47
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	2 cut(s)	40, 313
MspR9I	CCNGG	1 cut(s)	150
MunI	CAATTG	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	150
NdeII	GATC	1 cut(s)	171
NlaIII	CATG	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	2 cut(s)	267, 325
Psp6I	CCWGG	1 cut(s)	148
PspFI	CCCAGC	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	148
PspPI	GGNCC	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	171
RsaI	GTAC	2 cut(s)	124, 222
RsaNI	GTAC	2 cut(s)	123, 221
SaqAI	TTAA	3 cut(s)	167, 177, 186
SatI	GCNGC	2 cut(s)	266, 324
Sau3AI	GATC	1 cut(s)	171
Sau96I	GGNCC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	150
SetI	ASST	9 cut(s)	107, 118, 186, 196, 204, 214, 270, 277, 362
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	2 cut(s)	33, 374
SsiI	CCGC	1 cut(s)	324
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	122, 319
TasI	AATT	2 cut(s)	33, 374
TatI	WGTACW	1 cut(s)	220
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	3 cut(s)	167, 177, 186
Tru9I	TTAA	3 cut(s)	167, 177, 186
TscAI	CASTG	2 cut(s)	93, 304
TseI	GCWGC	1 cut(s)	265
TspRI	CASTG	2 cut(s)	93, 304
Vha464I	CTTAAG	1 cut(s)	176
XagI	CCTNNNNNAGG	1 cut(s)	179
XapI	RAATTY	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.