Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000457

Physical Location & Seq

Genomic Coordinates Forward (+)

6986312 .. 6987863

Gene Structure 1552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G20140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCAGAAACGAAGAAGATGATCATCCTTAAGAGCTCCGACGGTGAATCCTTCGAGATCGAGGAAGCCGTCGCTGTTAAGTCCCAGACGATTAAGCACATGATTGAGGACGACTGTGCCGATAACGGAATTCCACTTCCCAATGTCACCGGAGCCATCCTCGCCAAGGTTATTGAGTATTGCAAGAAGCACGTTGAAGCCGCTGCTGAAGCTGGTGGAGACAAGGATTTCTATGGTTCCGCTGAGAACGACGAGCTTAAGAATTGGGACAGCGAATTCGTCAAAGTCGATCAGCCTACTCTCTTCGATCTCATCTTGGCTGCGAACTATTTGAACATCGGTGGACTTCTTGACCTTACGTGCAAGGCCGTGGCTGATCAGATGAGAGGCAAAACTCCAGAGCAGATGCGTGCACACTTCAACATCAAGAACGATTACACACCTGAGGAAGAGGCGGAGGTTCGCAATGAGAACAAGTGGGCGTTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0019005 GO:0019538 GO:0019941 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0051603 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

163

Amino Acids

18.19

Weight (kDa)

4.61

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	6 - 65	9e-31	Skp1 family, tetramerisation domain
Skp1	PF01466	115 - 161	3.4e-27	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca	FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica	MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica	Prupe.8G166100_v2.0.a1
pyrus_communis	pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis	RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata	RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora	Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa	Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha	Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana	Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	201, 240, 455
AcsI	RAATTY	2 cut(s)	129, 275
AcuI	CTGAAG	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	166
AflII	CTTAAG	2 cut(s)	29, 257
AgsI	TTSAA	3 cut(s)	197, 334, 421
AluBI	AGCT	3 cut(s)	36, 212, 256
AluI	AGCT	3 cut(s)	36, 212, 256
Alw21I	GWGCWC	2 cut(s)	38, 415
Alw26I	GTCTC	1 cut(s)	213
Alw44I	GTGCAC	1 cut(s)	411
AoxI	GGCC	1 cut(s)	366
ApaLI	GTGCAC	1 cut(s)	411
ApeKI	GCWGC	2 cut(s)	203, 320
ApoI	RAATTY	2 cut(s)	129, 275
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AsuHPI	GGTGA	2 cut(s)	56, 139
AxyI	CCTNAGG	1 cut(s)	444
BaeGI	GKGCMC	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	38
Bbv12I	GWGCWC	2 cut(s)	38, 415
BbvI	GCAGC	2 cut(s)	190, 307
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	2 cut(s)	53, 353
BclI	TGATCA	2 cut(s)	21, 376
BcoDI	GTCTC	1 cut(s)	213
BfrI	CTTAAG	2 cut(s)	29, 257
BisI	GCNGC	3 cut(s)	201, 204, 321
BlsI	GCNGC	3 cut(s)	202, 205, 322
BmiI	GGNNCC	2 cut(s)	154, 238
BmsI	GCATC	1 cut(s)	396
BplI	GAGNNNNNCTC	2 cut(s)	144, 176
BpmI	CTGGAG	1 cut(s)	381
BsaAI	YACGTR	1 cut(s)	360
BsaBI	GATNNNNATC	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	165, 369
BsaWI	WCCGGW	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse21I	CCTNAGG	1 cut(s)	444
Bse3DI	GCAATG	1 cut(s)	472
Bse8I	GATNNNNATC	1 cut(s)	23
BseDI	CCNNGG	2 cut(s)	165, 369
BseGI	GGATG	2 cut(s)	24, 156
BseJI	GATNNNNATC	1 cut(s)	23
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMI	GCAATG	1 cut(s)	472
BseMII	CTCAG	2 cut(s)	234, 435
BseSI	GKGCMC	1 cut(s)	415
BseXI	GCAGC	2 cut(s)	190, 307
BshFI	GGCC	1 cut(s)	368
BsiHKAI	GWGCWC	2 cut(s)	38, 415
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	2 cut(s)	67, 281
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	213
BsmFI	GGGAC	2 cut(s)	67, 281
BsnI	GGCC	1 cut(s)	368
Bsp1286I	GDGCHC	2 cut(s)	38, 415
Bsp143I	GATC	5 cut(s)	21, 57, 289, 307, 376
BspACI	CCGC	3 cut(s)	201, 240, 455
BspANI	GGCC	1 cut(s)	368
BspCNI	CTCAG	2 cut(s)	235, 436
BspLI	GGNNCC	2 cut(s)	154, 238
BspTI	CTTAAG	2 cut(s)	29, 257
BsrDI	GCAATG	1 cut(s)	472
BssECI	CCNNGG	2 cut(s)	165, 369
BssMI	GATC	5 cut(s)	21, 57, 289, 307, 376
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	2 cut(s)	44, 116
Bst6I	CTCTTC	2 cut(s)	308, 444
BstAFI	CTTAAG	2 cut(s)	29, 257
BstBAI	YACGTR	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	2 cut(s)	243, 444
BstDSI	CCRYGG	1 cut(s)	369
BstENI	CCTNNNNNAGG	1 cut(s)	164
BstF5I	GGATG	2 cut(s)	24, 156
BstKTI	GATC	5 cut(s)	24, 60, 292, 310, 379
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	5 cut(s)	21, 57, 289, 307, 376
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 209
BstSLI	GKGCMC	1 cut(s)	415
BstV1I	GCAGC	2 cut(s)	190, 307
Bsu36I	CCTNAGG	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	368
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	2 cut(s)	24, 156
Cac8I	GCNNGC	1 cut(s)	411
CviAII	CATG	1 cut(s)	100
DdeI	CTNAG	2 cut(s)	243, 444
DpnI	GATC	5 cut(s)	23, 59, 291, 309, 378
DpnII	GATC	5 cut(s)	21, 57, 289, 307, 376
Eam1104I	CTCTTC	2 cut(s)	308, 444
EarI	CTCTTC	2 cut(s)	308, 444
EciI	GGCGGA	1 cut(s)	470
Ecl136II	GAGCTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	38
Eco53kI	GAGCTC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	228
Eco81I	CCTNAGG	1 cut(s)	444
EcoICRI	GAGCTC	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	164
EcoRI	GAATTC	2 cut(s)	129, 275
EcoT14I	CCWWGG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	1 cut(s)	103
FaiI	YATR	2 cut(s)	101, 234
FaqI	GGGAC	2 cut(s)	67, 281
FatI	CATG	1 cut(s)	99
FbaI	TGATCA	2 cut(s)	21, 376
Fnu4HI	GCNGC	3 cut(s)	201, 204, 321
FokI	GGATG	2 cut(s)	11, 143
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	3 cut(s)	201, 204, 321
GluI	GCNGC	3 cut(s)	201, 204, 321
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	1 cut(s)	150
Hin1II	CATG	1 cut(s)	103
HinfI	GANTC	1 cut(s)	47
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	2 cut(s)	56, 139
Hpy166II	GTNNAC	2 cut(s)	344, 413
Hpy188I	TCNGA	2 cut(s)	40, 381
Hpy188III	TCNNGA	4 cut(s)	55, 350, 398, 427
Hpy8I	GTNNAC	2 cut(s)	344, 413
Hpy99I	CGWCG	3 cut(s)	44, 74, 254
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	2 cut(s)	44, 116
HpyCH4IV	ACGT	2 cut(s)	192, 359
HpyCH4V	TGCA	3 cut(s)	183, 363, 413
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 209
HpyF3I	CTNAG	2 cut(s)	243, 444
HpySE526I	ACGT	2 cut(s)	192, 359
Hsp92II	CATG	1 cut(s)	103
Ksp22I	TGATCA	2 cut(s)	21, 376
Kzo9I	GATC	5 cut(s)	21, 57, 289, 307, 376
LmnI	GCTCC	2 cut(s)	41, 152
LpnPI	CCDG	5 cut(s)	98, 163, 198, 411, 456
Lsp1109I	GCAGC	2 cut(s)	190, 307
LweI	GCATC	1 cut(s)	396
MaeII	ACGT	2 cut(s)	192, 359
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	5 cut(s)	23, 59, 291, 309, 378
MboI	GATC	5 cut(s)	21, 57, 289, 307, 376
MboII	GAAGA	4 cut(s)	25, 28, 295, 461
MhlI	GDGCHC	2 cut(s)	38, 415
MluCI	AATT	3 cut(s)	129, 262, 275
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	7 cut(s)	55, 100, 170, 380, 439, 445, 451
MseI	TTAA	4 cut(s)	30, 78, 93, 258
MspA1I	CMGCKG	2 cut(s)	203, 242
MspCI	CTTAAG	2 cut(s)	29, 257
MspI	CCGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	2 cut(s)	161, 209
NdeII	GATC	5 cut(s)	21, 57, 289, 307, 376
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	2 cut(s)	154, 238
NmuCI	GTSAC	1 cut(s)	145
PcsI	WCGNNNNNNNCGW	3 cut(s)	66, 117, 285
PfeI	GAWTC	1 cut(s)	47
PkrI	GCNGC	3 cut(s)	202, 205, 322
Ppu21I	YACGTR	1 cut(s)	360
Psp124BI	GAGCTC	1 cut(s)	38
PspN4I	GGNNCC	2 cut(s)	154, 238
SacI	GAGCTC	1 cut(s)	38
SaqAI	TTAA	4 cut(s)	30, 78, 93, 258
SatI	GCNGC	3 cut(s)	201, 204, 321
Sau3AI	GATC	5 cut(s)	21, 57, 289, 307, 376
SduI	GDGCHC	2 cut(s)	38, 415
SetI	ASST	9 cut(s)	38, 171, 195, 214, 258, 357, 362, 445, 462
SfaNI	GCATC	1 cut(s)	396
SmlI	CTYRAG	2 cut(s)	29, 257
SmoI	CTYRAG	2 cut(s)	29, 257
Sse9I	AATT	3 cut(s)	129, 262, 275
SsiI	CCGC	3 cut(s)	201, 240, 455
SstI	GAGCTC	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	44, 116
TaiI	ACGT	2 cut(s)	195, 362
TaqI	TCGA	5 cut(s)	54, 60, 288, 306, 486
TasI	AATT	3 cut(s)	129, 262, 275
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	4 cut(s)	30, 78, 93, 258
Tru9I	TTAA	4 cut(s)	30, 78, 93, 258
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	2 cut(s)	203, 320
Tsp45I	GTSAC	1 cut(s)	145
TspGWI	ACGGA	1 cut(s)	141
Vha464I	CTTAAG	2 cut(s)	29, 257
VneI	GTGCAC	1 cut(s)	411
XagI	CCTNNNNNAGG	1 cut(s)	164
XapI	RAATTY	2 cut(s)	129, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.