Rh6AG023400

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000457
Physical Location & Seq
Forward (+)
2750441 .. 2755504
5064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG023400.1

Sequence Viewer

Length: 489 bp
ATGTCGACTGAAATTGAGAACAAGAAGCTAACTCTGAAGAGCTCCGACGGAGAGGAATTCGAGGTTGATGAGGCTGTTGCTCTTCACTCTGAGACCATCAAGCACATGATGGAGGACGGCTGCGCCGATAATGCCATCCCATTGACCGGCGTCATCCTTGCCAAAGTCATCGAGTACTTAAAGAAGCACGCTCAGGACAAGGAAGGCAAGGATCAGAAGAAGTCTCTCAAGAGATTCGACGCCGATTTCGTCGACGTCGAGCTGTCCGTCCTGATTGATCTGATATTGGCAGCAGATCGTCTGAAAATCAAGAAGCTGTGGGACTTGACATGCCAGACTGTGGCGGACATGATCAAAGATCCTGAGATTTTTGGGACTGGTGAAAATGGACTCAGTTGCTTGACTTGTTACAAATTCTTCATCTTCACCTTTGGGGTGGCTCCATGGATACCATATACCATACAAGGTAAAAGCACTCAAAGCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

162

Amino Acids

18.11

Weight (kDa)

5.0

Isoelectric Point (pI)

27.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 8 - 64 7.7e-21 Skp1 family, tetramerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 258
AccB7I CCANNNNNTGG 1 cut(s) 340
AccI GTMKAC 2 cut(s) 5, 252
AciI CCGC 2 cut(s) 344, 483
AclWI GGATC 2 cut(s) 219, 353
AcsI RAATTY 2 cut(s) 56, 413
AcuI CTGAAG 1 cut(s) 56
AcyI GRCGYC 3 cut(s) 150, 240, 255
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 2 cut(s) 146, 340
AluBI AGCT 4 cut(s) 28, 42, 262, 316
AluI AGCT 4 cut(s) 28, 42, 262, 316
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 2 cut(s) 86, 228
AlwI GGATC 2 cut(s) 219, 353
ApeKI GCWGC 2 cut(s) 120, 290
ApoI RAATTY 2 cut(s) 56, 413
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
AspLEI GCGC 1 cut(s) 125
AsuHPI GGTGA 2 cut(s) 392, 418
BanII GRGCYC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 2 cut(s) 107, 302
BccI CCATC 3 cut(s) 103, 104, 143
BceAI ACGGC 1 cut(s) 133
BciVI GTATCC 1 cut(s) 441
BclI TGATCA 1 cut(s) 351
BcoDI GTCTC 2 cut(s) 86, 228
BfaI CTAG 1 cut(s) 487
BfuI GTATCC 1 cut(s) 441
BisI GCNGC 3 cut(s) 121, 291, 484
BlsI GCNGC 3 cut(s) 122, 292, 485
BmcAI AGTACT 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 441
BoxI GACNNNNGTC 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 212
BsaHI GRCGYC 3 cut(s) 150, 240, 255
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 443
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 340
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 382
BseDI CCNNGG 1 cut(s) 443
BseGI GGATG 2 cut(s) 135, 153
BseLI CCNNNNNNNGG 2 cut(s) 146, 340
BseMII CTCAG 4 cut(s) 81, 206, 354, 406
BseNI ACTGG 1 cut(s) 382
BseXI GCAGC 2 cut(s) 107, 302
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 2 cut(s) 335, 388
BslI CCNNNNNNNGG 2 cut(s) 146, 340
BsmAI GTCTC 2 cut(s) 86, 228
BsmFI GGGAC 2 cut(s) 335, 388
Bso31I GGTCTC 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 5 cut(s) 211, 277, 295, 351, 358
Bsp19I CCATGG 1 cut(s) 443
BspACI CCGC 2 cut(s) 344, 483
BspCNI CTCAG 4 cut(s) 82, 205, 355, 405
BspLI GGNNCC 1 cut(s) 441
BspPI GGATC 2 cut(s) 219, 353
BspQI GCTCTTC 2 cut(s) 32, 87
BspTNI GGTCTC 1 cut(s) 86
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 1 cut(s) 382
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 443
BssMI GATC 5 cut(s) 211, 277, 295, 351, 358
BssNI GRCGYC 3 cut(s) 150, 240, 255
BssT1I CCWWGG 1 cut(s) 443
Bst4CI ACNGT 1 cut(s) 340
Bst6I CTCTTC 2 cut(s) 32, 87
BstACI GRCGYC 3 cut(s) 150, 240, 255
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 4 cut(s) 90, 192, 363, 392
BstDSI CCRYGG 1 cut(s) 443
BstF5I GGATG 2 cut(s) 135, 153
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 5 cut(s) 214, 280, 298, 354, 361
BstMAI GTCTC 2 cut(s) 86, 228
BstMBI GATC 5 cut(s) 211, 277, 295, 351, 358
BstMWI GCNNNNNNNGC 2 cut(s) 131, 480
BstNSI RCATGY 1 cut(s) 333
BstPAI GACNNNNGTC 1 cut(s) 149
BstV1I GCAGC 2 cut(s) 107, 302
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuI GTATCC 1 cut(s) 441
BtgI CCRYGG 1 cut(s) 443
BtsCI GGATG 2 cut(s) 135, 153
Cac8I GCNNGC 1 cut(s) 189
CfoI GCGC 1 cut(s) 125
Cfr10I RCCGGY 1 cut(s) 146
CseI GACGC 2 cut(s) 139, 248
Csp6I GTAC 1 cut(s) 175
CviAII CATG 4 cut(s) 106, 330, 349, 444
CviJI RGCY 8 cut(s) 28, 42, 74, 120, 262, 316, 440, 486
CviKI_1 RGCY 8 cut(s) 28, 42, 74, 120, 262, 316, 440, 486
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 4 cut(s) 90, 192, 363, 392
DpnI GATC 5 cut(s) 213, 279, 297, 353, 360
DpnII GATC 5 cut(s) 211, 277, 295, 351, 358
Eam1104I CTCTTC 2 cut(s) 32, 87
EarI CTCTTC 2 cut(s) 32, 87
EciI GGCGGA 1 cut(s) 359
Ecl136II GAGCTC 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 443
Eco24I GRGCYC 1 cut(s) 44
Eco31I GGTCTC 1 cut(s) 86
Eco53kI GAGCTC 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 56
EcoICRI GAGCTC 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 443
EcoT38I GRGCYC 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 443
FaeI CATG 4 cut(s) 109, 333, 352, 447
FaiI YATR 7 cut(s) 107, 331, 350, 445, 454, 456, 461
FaqI GGGAC 2 cut(s) 335, 388
FatI CATG 4 cut(s) 105, 329, 348, 443
FbaI TGATCA 1 cut(s) 351
FblI GTMKAC 2 cut(s) 5, 252
Fnu4HI GCNGC 3 cut(s) 121, 291, 484
FokI GGATG 2 cut(s) 122, 140
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 3 cut(s) 121, 291, 484
FspBI CTAG 1 cut(s) 487
GlaI GCGC 1 cut(s) 124
GluI GCNGC 3 cut(s) 121, 291, 484
HapII CCGG 1 cut(s) 147
HgaI GACGC 2 cut(s) 139, 248
HhaI GCGC 1 cut(s) 125
Hin1I GRCGYC 3 cut(s) 150, 240, 255
Hin1II CATG 4 cut(s) 109, 333, 352, 447
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HincII GTYRAC 2 cut(s) 6, 253
HindII GTYRAC 2 cut(s) 6, 253
HinfI GANTC 2 cut(s) 234, 390
HpaII CCGG 1 cut(s) 147
HphI GGTGA 2 cut(s) 392, 418
Hpy166II GTNNAC 2 cut(s) 6, 253
Hpy188I TCNGA 6 cut(s) 36, 46, 91, 216, 282, 303
Hpy188III TCNNGA 5 cut(s) 194, 229, 271, 310, 362
Hpy8I GTNNAC 2 cut(s) 6, 253
Hpy99I CGWCG 5 cut(s) 50, 242, 254, 257, 260
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4IV ACGT 1 cut(s) 255
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 480
HpyF3I CTNAG 4 cut(s) 90, 192, 363, 392
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 3 cut(s) 150, 240, 255
Hsp92II CATG 4 cut(s) 109, 333, 352, 447
HspAI GCGC 1 cut(s) 123
Ksp22I TGATCA 1 cut(s) 351
Kzo9I GATC 5 cut(s) 211, 277, 295, 351, 358
LguI GCTCTTC 2 cut(s) 32, 87
LmnI GCTCC 2 cut(s) 47, 445
LpnPI CCDG 6 cut(s) 160, 179, 284, 347, 363, 375
Lsp1109I GCAGC 2 cut(s) 107, 302
MaeI CTAG 1 cut(s) 487
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 407
MalI GATC 5 cut(s) 213, 279, 297, 353, 360
MboI GATC 5 cut(s) 211, 277, 295, 351, 358
MboII GAAGA 5 cut(s) 49, 74, 229, 409, 415
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 3 cut(s) 12, 56, 413
MlyI GAGTC 1 cut(s) 384
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 4 cut(s) 46, 55, 64, 106
MseI TTAA 1 cut(s) 179
MspI CCGG 1 cut(s) 147
MwoI GCNNNNNNNGC 2 cut(s) 131, 480
NcoI CCATGG 1 cut(s) 443
NdeII GATC 5 cut(s) 211, 277, 295, 351, 358
NlaIII CATG 4 cut(s) 109, 333, 352, 447
NlaIV GGNNCC 1 cut(s) 441
NspI RCATGY 1 cut(s) 333
PciSI GCTCTTC 2 cut(s) 32, 87
PcsI WCGNNNNNNNCGW 4 cut(s) 123, 246, 255, 264
PfeI GAWTC 1 cut(s) 234
PflMI CCANNNNNTGG 1 cut(s) 340
PkrI GCNGC 3 cut(s) 122, 292, 485
PleI GAGTC 1 cut(s) 384
PpsI GAGTC 1 cut(s) 384
PshAI GACNNNNGTC 1 cut(s) 149
Psp124BI GAGCTC 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 441
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SacI GAGCTC 1 cut(s) 44
SalI GTCGAC 2 cut(s) 4, 251
SapI GCTCTTC 2 cut(s) 32, 87
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 3 cut(s) 121, 291, 484
Sau3AI GATC 5 cut(s) 211, 277, 295, 351, 358
ScaI AGTACT 1 cut(s) 176
SchI GAGTC 1 cut(s) 384
SduI GDGCHC 1 cut(s) 44
SetI ASST 8 cut(s) 30, 44, 66, 258, 264, 318, 431, 469
SgrDI CGTCGACG 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 3 cut(s) 12, 56, 413
SsiI CCGC 2 cut(s) 344, 483
SspMI CTAG 1 cut(s) 487
SstI GAGCTC 1 cut(s) 44
StyI CCWWGG 1 cut(s) 443
TaaI ACNGT 1 cut(s) 340
TaiI ACGT 1 cut(s) 258
TaqI TCGA 6 cut(s) 5, 60, 171, 237, 252, 258
TasI AATT 3 cut(s) 12, 56, 413
TatI WGTACW 1 cut(s) 174
TauI GCSGC 1 cut(s) 486
TfiI GAWTC 1 cut(s) 234
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TseI GCWGC 2 cut(s) 120, 290
TspDTI ATGAA 1 cut(s) 409
TspGWI ACGGA 2 cut(s) 63, 256
Van91I CCANNNNNTGG 1 cut(s) 340
XapI RAATTY 2 cut(s) 56, 413
XceI RCATGY 1 cut(s) 333
XmiI GTMKAC 2 cut(s) 5, 252
XspI CTAG 1 cut(s) 487
ZraI GACGTC 1 cut(s) 256
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.