MD10G1125000.v1.1

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000457
Physical Location & Seq
Forward (+)
20460018 .. 20461909
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1125000.v1.1.491

Sequence Viewer

Length: 492 bp
ATGGCCGCTGAGAAGAAGATGATCACCCTGAAGAGCTCGGACGGCGAGGCGTTCGAGGTCGATGAGGCGGTTGCTATGGAGTCACAGACCATCAAGCACTTGGTGGAGGACTGCGCCGACAATGCGATCCCTCTCCCCAACGTGACCAGCCACATCCTCGCCAAGATCATCGAGTACTGCCGGAAGCATGTCGAGGGTCGCAAAGACGGCGACAGCACCGACCTCGGCAAGAGCGGCGATGAGACTCTCAAGAAGTTTGACGAGGACTTCGTCAACGAGATAAAAGCTGATCAGAATGTCCTCTTTGATCTGATTTTAGCTGCGAACTATCTAAACATCAAGAGCCTGCTGGATCTGACCTGCCAGACTGTGGCTGACATGATCAAGGGAAAGACACCTGAAGAGATCCGCAAGACTTTCAATATCAAGAATGATTTCACCCCTGAGGAGGAAGAAGAGGTTCGCAGGGAGAACCAGTGGGCATTCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

164

Amino Acids

18.48

Weight (kDa)

4.66

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 6 - 64 6e-28 Skp1 family, tetramerisation domain
Skp1 PF01466 114 - 161 1.2e-31 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 368
AccB7I CCANNNNNTGG 1 cut(s) 370
AccBSI CCGCTC 1 cut(s) 234
AciI CCGC 4 cut(s) 6, 68, 234, 409
AclWI GGATC 3 cut(s) 121, 360, 400
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 50, 420
AdeI CACNNNGTG 1 cut(s) 103
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 2 cut(s) 370, 448
AgsI TTSAA 1 cut(s) 421
AluBI AGCT 3 cut(s) 36, 287, 320
AluI AGCT 3 cut(s) 36, 287, 320
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 3 cut(s) 121, 360, 400
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 320
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
Asp700I GAANNNNTTC 2 cut(s) 434, 459
AspLEI GCGC 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 16, 430
AxyI CCTNAGG 1 cut(s) 444
BanII GRGCYC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 307
BccI CCATC 1 cut(s) 98
BceAI ACGGC 2 cut(s) 58, 223
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BclI TGATCA 3 cut(s) 21, 289, 381
BcoDI GTCTC 1 cut(s) 236
BfuAI ACCTGC 1 cut(s) 368
BisI GCNGC 3 cut(s) 6, 235, 321
BlsI GCNGC 3 cut(s) 7, 236, 322
BmcAI AGTACT 1 cut(s) 176
BpuEI CTTGAG 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 461, 491
Bsc4I CCNNNNNNNGG 2 cut(s) 370, 448
Bse1I ACTGG 1 cut(s) 475
Bse21I CCTNAGG 1 cut(s) 444
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 2 cut(s) 370, 448
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 1 cut(s) 475
BseRI GAGGAG 1 cut(s) 461
BseXI GCAGC 1 cut(s) 307
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 38
BsiSI CCGG 1 cut(s) 181
BslI CCNNNNNNNGG 2 cut(s) 370, 448
BsmAI GTCTC 1 cut(s) 236
BsmI GAATGC 1 cut(s) 482
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 8 cut(s) 21, 126, 165, 289, 307, 352, 381, 405
BspACI CCGC 4 cut(s) 6, 68, 234, 409
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 436
BspMI ACCTGC 1 cut(s) 368
BspPI GGATC 3 cut(s) 121, 360, 400
BspQI GCTCTTC 1 cut(s) 26
BsrBI CCGCTC 1 cut(s) 234
BsrI ACTGG 1 cut(s) 475
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 8 cut(s) 21, 126, 165, 289, 307, 352, 381, 405
Bst4CI ACNGT 1 cut(s) 370
Bst6I CTCTTC 3 cut(s) 26, 396, 450
BstC8I GCNNGC 1 cut(s) 347
BstDEI CTNAG 2 cut(s) 9, 444
BstF5I GGATG 1 cut(s) 153
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 8 cut(s) 24, 129, 168, 292, 310, 355, 384, 408
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 8 cut(s) 21, 126, 165, 289, 307, 352, 381, 405
BstMWI GCNNNNNNNGC 4 cut(s) 42, 122, 207, 234
BstNSI RCATGY 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 307
BstX2I RGATCY 2 cut(s) 352, 405
BstYI RGATCY 2 cut(s) 352, 405
Bsu36I CCTNAGG 1 cut(s) 444
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 482
BveI ACCTGC 1 cut(s) 368
Cac8I GCNNGC 1 cut(s) 347
CfoI GCGC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 175
CviAII CATG 2 cut(s) 188, 379
CviJI RGCY 7 cut(s) 5, 36, 150, 287, 320, 345, 374
CviKI_1 RGCY 7 cut(s) 5, 36, 150, 287, 320, 345, 374
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 2 cut(s) 9, 444
DpnI GATC 8 cut(s) 23, 128, 167, 291, 309, 354, 383, 407
DpnII GATC 8 cut(s) 21, 126, 165, 289, 307, 352, 381, 405
DraIII CACNNNGTG 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 26, 396, 450
EarI CTCTTC 3 cut(s) 26, 396, 450
Ecl136II GAGCTC 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 36
Eco57I CTGAAG 2 cut(s) 50, 420
Eco81I CCTNAGG 1 cut(s) 444
EcoICRI GAGCTC 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 38
FaeI CATG 2 cut(s) 191, 382
FaiI YATR 3 cut(s) 77, 189, 380
FatI CATG 2 cut(s) 187, 378
FbaI TGATCA 3 cut(s) 21, 289, 381
Fnu4HI GCNGC 3 cut(s) 6, 235, 321
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 3 cut(s) 6, 235, 321
GlaI GCGC 1 cut(s) 115
GluI GCNGC 3 cut(s) 6, 235, 321
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 181
HhaI GCGC 1 cut(s) 116
Hin1II CATG 2 cut(s) 191, 382
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 2 cut(s) 80, 244
HpaII CCGG 1 cut(s) 181
HphI GGTGA 2 cut(s) 16, 430
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 4 cut(s) 40, 294, 312, 357
Hpy188III TCNNGA 3 cut(s) 250, 340, 427
Hpy8I GTNNAC 1 cut(s) 274
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4IV ACGT 1 cut(s) 141
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 122, 207, 234
HpyF3I CTNAG 2 cut(s) 9, 444
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 2 cut(s) 191, 382
HspAI GCGC 1 cut(s) 114
Ksp22I TGATCA 3 cut(s) 21, 289, 381
Kzo9I GATC 8 cut(s) 21, 126, 165, 289, 307, 352, 381, 405
LguI GCTCTTC 1 cut(s) 26
Lsp1109I GCAGC 1 cut(s) 307
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 2 cut(s) 81, 142
MalI GATC 8 cut(s) 23, 128, 167, 291, 309, 354, 383, 407
MbiI CCGCTC 1 cut(s) 234
MboI GATC 8 cut(s) 21, 126, 165, 289, 307, 352, 381, 405
MboII GAAGA 6 cut(s) 25, 28, 43, 413, 464, 467
MflI RGATCY 2 cut(s) 352, 405
MhlI GDGCHC 1 cut(s) 38
MlyI GAGTC 2 cut(s) 89, 238
MroXI GAANNNNTTC 2 cut(s) 434, 459
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 1 cut(s) 181
Mva1269I GAATGC 1 cut(s) 482
MwoI GCNNNNNNNGC 4 cut(s) 42, 122, 207, 234
NdeII GATC 8 cut(s) 21, 126, 165, 289, 307, 352, 381, 405
NlaIII CATG 2 cut(s) 191, 382
NmeAIII GCCGAG 1 cut(s) 204
NmuCI GTSAC 2 cut(s) 81, 142
NspI RCATGY 1 cut(s) 191
PciSI GCTCTTC 1 cut(s) 26
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PctI GAATGC 1 cut(s) 482
PdmI GAANNNNTTC 2 cut(s) 434, 459
PflFI GACNNNGTC 1 cut(s) 269
PflMI CCANNNNNTGG 1 cut(s) 370
PkrI GCNGC 3 cut(s) 7, 236, 322
PleI GAGTC 2 cut(s) 88, 238
PpsI GAGTC 2 cut(s) 88, 238
Psp124BI GAGCTC 1 cut(s) 38
PsuI RGATCY 2 cut(s) 352, 405
PsyI GACNNNGTC 1 cut(s) 269
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SacI GAGCTC 1 cut(s) 38
SapI GCTCTTC 1 cut(s) 26
SatI GCNGC 3 cut(s) 6, 235, 321
Sau3AI GATC 8 cut(s) 21, 126, 165, 289, 307, 352, 381, 405
ScaI AGTACT 1 cut(s) 176
SchI GAGTC 2 cut(s) 89, 238
SduI GDGCHC 1 cut(s) 38
SetI ASST 9 cut(s) 38, 60, 144, 225, 289, 322, 362, 400, 462
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
SsiI CCGC 4 cut(s) 6, 68, 234, 409
SstI GAGCTC 1 cut(s) 38
TaaI ACNGT 1 cut(s) 370
TaiI ACGT 1 cut(s) 144
TaqI TCGA 5 cut(s) 54, 60, 171, 192, 486
TatI WGTACW 1 cut(s) 174
TauI GCSGC 2 cut(s) 8, 237
TscAI CASTG 1 cut(s) 482
TseFI GTSAC 2 cut(s) 81, 142
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 2 cut(s) 81, 142
TspRI CASTG 1 cut(s) 482
Tth111I GACNNNGTC 1 cut(s) 269
Van91I CCANNNNNTGG 1 cut(s) 370
XceI RCATGY 1 cut(s) 191
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XmnI GAANNNNTTC 2 cut(s) 434, 459
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.