Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000457

Physical Location & Seq

Genomic Coordinates Forward (+)

28516519 .. 28517896

Gene Structure 1378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTCTGCGAAGAAGATTGTGTTGAAGAGTTCCGATGGTGAATCTTTCGAGGTTGAGGAGGCGGTGGCTCTCGAGTCACAAACCATAGCGCATATGGTTGAAGACGACTGCGTCGACAACGGAGTCCCTCTTCCTAACGTCACGAGCAAGATCCTCGCCAAGGTGATCGAGTATTGCAAGAGGCACGTCGAGGCTGCTGCCTCTAAGGCCGAGGCCGTCGAGGGTGCTGCTACCTCCGATGACGATCTTAAGGCCTGGGACGCTGATTTTATGAAGATCGATCAAGCTACTCTCTTTGAACTCATTCTGGCTGCTAATTACCTGAATATCAAGAACTTGCTTGATCTAACATGTCAGACAGTTGCGGATATGATCAAAGGAAAGACTCCAGAAGAGATCCGCACAACGTTCAACATTAAGAACGACTTCACACCAGAGGAAGAGGAAGAGGTTCGCAGAGAGAACCAATGGGCTTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000226 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005886 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009524 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010605 GO:0015630 GO:0016020 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045910 GO:0045934 GO:0046686 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

160

Amino Acids

17.86

Weight (kDa)

4.47

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	4 - 63	7.1e-31	Skp1 family, tetramerisation domain
Skp1	PF01466	111 - 158	8.2e-31	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca	FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica	MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica	Prupe.8G166100_v2.0.a1
pyrus_communis	pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis	RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata	RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora	Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa	Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha	Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana	Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	110, 122
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	3 cut(s)	62, 365, 400
AclI	AACGTT	1 cut(s)	407
AclWI	GGATC	2 cut(s)	145, 391
AfiI	CCNNNNNNNGG	1 cut(s)	160
AflII	CTTAAG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	350
AgsI	TTSAA	5 cut(s)	25, 101, 299, 412, 479
AjiI	CACGTC	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	1 cut(s)	287
AluI	AGCT	1 cut(s)	287
AlwI	GGATC	2 cut(s)	145, 391
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	3 cut(s)	207, 213, 252
ApeKI	GCWGC	4 cut(s)	194, 197, 227, 311
Asp700I	GAANNNNTTC	3 cut(s)	303, 425, 450
AspLEI	GCGC	1 cut(s)	91
AsuHPI	GGTGA	2 cut(s)	50, 175
AvaI	CYCGRG	1 cut(s)	71
BauI	CACGAG	1 cut(s)	142
BbsI	GAAGAC	1 cut(s)	108
BbvI	GCAGC	4 cut(s)	181, 184, 214, 298
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	200
BcgI	CGANNNNNNTGC	6 cut(s)	136, 170, 179, 209, 213, 243
BciT130I	CCWGG	1 cut(s)	256
BclI	TGATCA	1 cut(s)	372
BfrI	CTTAAG	1 cut(s)	248
BglI	GCCNNNNNGGC	1 cut(s)	206
BisI	GCNGC	4 cut(s)	195, 198, 228, 312
BlsI	GCNGC	4 cut(s)	196, 199, 229, 313
Bme1390I	CCNGG	1 cut(s)	256
BmeT110I	CYCGRG	1 cut(s)	71
BmgBI	CACGTC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	256
BpiI	GAAGAC	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	372
Bsa29I	ATCGAT	1 cut(s)	279
BsaBI	GATNNNNATC	1 cut(s)	243
BsaJI	CCNNGG	3 cut(s)	159, 210, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse8I	GATNNNNATC	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	256
BseCI	ATCGAT	1 cut(s)	279
BseDI	CCNNGG	3 cut(s)	159, 210, 255
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	4 cut(s)	181, 184, 214, 298
BshFI	GGCC	3 cut(s)	209, 215, 254
BshVI	ATCGAT	1 cut(s)	279
BsiHKCI	CYCGRG	1 cut(s)	71
BslFI	GGGAC	2 cut(s)	110, 272
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmFI	GGGAC	2 cut(s)	110, 272
BsnI	GGCC	3 cut(s)	209, 215, 254
BsoBI	CYCGRG	1 cut(s)	71
Bsp143I	GATC	8 cut(s)	150, 165, 244, 276, 280, 343, 372, 396
BspACI	CCGC	3 cut(s)	62, 365, 400
BspANI	GGCC	3 cut(s)	209, 215, 254
BspDI	ATCGAT	1 cut(s)	279
BspPI	GGATC	2 cut(s)	145, 391
BspTI	CTTAAG	1 cut(s)	248
BssECI	CCNNGG	3 cut(s)	159, 210, 255
BssMI	GATC	8 cut(s)	150, 165, 244, 276, 280, 343, 372, 396
BssSI	CACGAG	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	159
Bst2BI	CACGAG	1 cut(s)	142
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	5 cut(s)	20, 135, 387, 435, 441
BstAFI	CTTAAG	1 cut(s)	248
BstDEI	CTNAG	1 cut(s)	204
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	8 cut(s)	153, 168, 247, 279, 283, 346, 375, 399
BstMBI	GATC	8 cut(s)	150, 165, 244, 276, 280, 343, 372, 396
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 260
BstNI	CCWGG	1 cut(s)	256
BstNSI	RCATGY	1 cut(s)	354
BstSCI	CCNGG	1 cut(s)	254
BstV1I	GCAGC	4 cut(s)	181, 184, 214, 298
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	2 cut(s)	150, 396
BstYI	RGATCY	2 cut(s)	150, 396
Bsu15I	ATCGAT	1 cut(s)	279
BsuRI	GGCC	3 cut(s)	209, 215, 254
BsuTUI	ATCGAT	1 cut(s)	279
BtrI	CACGTC	1 cut(s)	187
CfoI	GCGC	1 cut(s)	91
ClaI	ATCGAT	1 cut(s)	279
CseI	GACGC	2 cut(s)	100, 269
CviAII	CATG	1 cut(s)	351
CviJI	RGCY	8 cut(s)	68, 194, 209, 215, 254, 287, 311, 473
CviKI_1	RGCY	8 cut(s)	68, 194, 209, 215, 254, 287, 311, 473
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	8 cut(s)	152, 167, 246, 278, 282, 345, 374, 398
DpnII	GATC	8 cut(s)	150, 165, 244, 276, 280, 343, 372, 396
DrdI	GACNNNNNNGTC	2 cut(s)	110, 122
DseDI	GACNNNNNNGTC	2 cut(s)	110, 122
Eam1104I	CTCTTC	5 cut(s)	20, 135, 387, 435, 441
EarI	CTCTTC	5 cut(s)	20, 135, 387, 435, 441
Eco130I	CCWWGG	1 cut(s)	159
Eco147I	AGGCCT	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	71
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	1 cut(s)	354
FaiI	YATR	6 cut(s)	86, 93, 95, 272, 352, 371
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FaqI	GGGAC	2 cut(s)	110, 272
FatI	CATG	1 cut(s)	350
FauNDI	CATATG	1 cut(s)	93
FbaI	TGATCA	1 cut(s)	372
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	4 cut(s)	195, 198, 228, 312
Fsp4HI	GCNGC	4 cut(s)	195, 198, 228, 312
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	4 cut(s)	195, 198, 228, 312
GsuI	CTGGAG	1 cut(s)	372
HaeIII	GGCC	3 cut(s)	209, 215, 254
HgaI	GACGC	2 cut(s)	100, 269
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	1 cut(s)	354
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	4 cut(s)	41, 74, 123, 385
HphI	GGTGA	2 cut(s)	50, 175
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	3 cut(s)	34, 238, 357
Hpy188III	TCNNGA	4 cut(s)	71, 142, 331, 389
Hpy8I	GTNNAC	1 cut(s)	115
Hpy99I	CGWCG	3 cut(s)	116, 191, 221
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	3 cut(s)	138, 186, 407
HpyCH4V	TGCA	1 cut(s)	177
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 260
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	3 cut(s)	138, 186, 407
Hsp92II	CATG	1 cut(s)	354
HspAI	GCGC	1 cut(s)	89
Ksp22I	TGATCA	1 cut(s)	372
Kzo9I	GATC	8 cut(s)	150, 165, 244, 276, 280, 343, 372, 396
LpnPI	CCDG	6 cut(s)	241, 268, 293, 335, 402, 447
Lsp1109I	GCAGC	4 cut(s)	181, 184, 214, 298
MaeII	ACGT	3 cut(s)	138, 186, 407
MaeIII	GTNAC	2 cut(s)	75, 139
MalI	GATC	8 cut(s)	152, 167, 246, 278, 282, 345, 374, 398
MboI	GATC	8 cut(s)	150, 165, 244, 276, 280, 343, 372, 396
MboII	GAAGA	9 cut(s)	22, 25, 37, 113, 122, 286, 404, 452, 458
MflI	RGATCY	2 cut(s)	150, 396
MluCI	AATT	1 cut(s)	316
MlyI	GAGTC	3 cut(s)	83, 132, 379
MroXI	GAANNNNTTC	3 cut(s)	303, 425, 450
MseI	TTAA	2 cut(s)	249, 417
MspCI	CTTAAG	1 cut(s)	248
MspR9I	CCNGG	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	2 cut(s)	206, 260
NdeI	CATATG	1 cut(s)	93
NdeII	GATC	8 cut(s)	150, 165, 244, 276, 280, 343, 372, 396
NlaIII	CATG	1 cut(s)	354
NmeAIII	GCCGAG	1 cut(s)	235
NmuCI	GTSAC	2 cut(s)	75, 139
NspI	RCATGY	1 cut(s)	354
PaeR7I	CTCGAG	1 cut(s)	71
PceI	AGGCCT	1 cut(s)	254
PciI	ACATGT	1 cut(s)	350
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PdmI	GAANNNNTTC	3 cut(s)	303, 425, 450
PfeI	GAWTC	1 cut(s)	41
PflFI	GACNNNGTC	1 cut(s)	110
PkrI	GCNGC	4 cut(s)	196, 199, 229, 313
PleI	GAGTC	3 cut(s)	82, 131, 379
PpsI	GAGTC	3 cut(s)	82, 131, 379
PscI	ACATGT	1 cut(s)	350
Psp1406I	AACGTT	1 cut(s)	407
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PsuI	RGATCY	2 cut(s)	150, 396
PsyI	GACNNNGTC	1 cut(s)	110
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	2 cut(s)	249, 417
SatI	GCNGC	4 cut(s)	195, 198, 228, 312
Sau3AI	GATC	8 cut(s)	150, 165, 244, 276, 280, 343, 372, 396
SchI	GAGTC	3 cut(s)	83, 132, 379
ScrFI	CCNGG	1 cut(s)	256
SetI	ASST	9 cut(s)	54, 141, 165, 189, 236, 289, 324, 410, 453
Sfr274I	CTCGAG	1 cut(s)	71
SlaI	CTCGAG	1 cut(s)	71
SmlI	CTYRAG	2 cut(s)	71, 248
SmoI	CTYRAG	2 cut(s)	71, 248
Sse9I	AATT	1 cut(s)	316
SseBI	AGGCCT	1 cut(s)	254
SsiI	CCGC	3 cut(s)	62, 365, 400
StuI	AGGCCT	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	254
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	3 cut(s)	141, 189, 410
TaqI	TCGA	7 cut(s)	48, 72, 114, 168, 189, 219, 279
TasI	AATT	1 cut(s)	316
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	2 cut(s)	249, 417
Tru9I	TTAA	2 cut(s)	249, 417
TseFI	GTSAC	2 cut(s)	75, 139
TseI	GCWGC	4 cut(s)	194, 197, 227, 311
Tsp45I	GTSAC	2 cut(s)	75, 139
TspDTI	ATGAA	1 cut(s)	287
TspGWI	ACGGA	1 cut(s)	135
Tth111I	GACNNNGTC	1 cut(s)	110
Vha464I	CTTAAG	1 cut(s)	248
XagI	CCTNNNNNAGG	1 cut(s)	158
XceI	RCATGY	1 cut(s)	354
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XhoI	CTCGAG	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	114
XmnI	GAANNNNTTC	3 cut(s)	303, 425, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.