Rmu_sc0000633.1_g000003

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000633.1
OG0000457
Physical Location & Seq
Forward (+)
7776 .. 8199
424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000633.1_g000003.1.cds

Sequence Viewer

Length: 288 bp
atgggtaatgggaaatgggtttttgggaaggattttgagttaacgggcctaaagcacatgatggaggacggctgcgccgataatgccatcccattgaccggcgtcatccttaccaaagtcatcgagtacttaaagaagcacgctgaggacaaggaaggcaaggatcagaagaagtctctcaagagattcgacgccgattttgtcgacgtcgagcagtccgtcctgattgatctgatattggcagcagattgtctgaaaatcaagaagctgtgggacttgacatgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

95

Amino Acids

10.73

Weight (kDa)

5.63

Isoelectric Point (pI)

16.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 210
AccI GTMKAC 1 cut(s) 204
AclWI GGATC 1 cut(s) 171
AcyI GRCGYC 3 cut(s) 102, 192, 207
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 98
AluBI AGCT 1 cut(s) 268
AluI AGCT 1 cut(s) 268
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 1 cut(s) 171
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 2 cut(s) 72, 242
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 46
BbvCI CCTCAGC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 59, 254
BccI CCATC 2 cut(s) 55, 95
BceAI ACGGC 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 1 cut(s) 286
BisI GCNGC 2 cut(s) 73, 243
BlsI GCNGC 2 cut(s) 74, 244
BmcAI AGTACT 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 46
BoxI GACNNNNGTC 1 cut(s) 101
Bpu10I CCTNAGC 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 164
BsaHI GRCGYC 3 cut(s) 102, 192, 207
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse118I RCCGGY 1 cut(s) 98
BseGI GGATG 2 cut(s) 87, 105
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMII CTCAG 1 cut(s) 135
BseXI GCAGC 2 cut(s) 59, 254
BshFI GGCC 1 cut(s) 48
BsiSI CCGG 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 180
BsnI GGCC 1 cut(s) 48
Bsp143I GATC 2 cut(s) 163, 229
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 1 cut(s) 136
BspPI GGATC 1 cut(s) 171
BsrFI RCCGGY 1 cut(s) 98
BssAI RCCGGY 1 cut(s) 98
BssMI GATC 2 cut(s) 163, 229
BssNI GRCGYC 3 cut(s) 102, 192, 207
BstACI GRCGYC 3 cut(s) 102, 192, 207
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 144
BstF5I GGATG 2 cut(s) 87, 105
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 2 cut(s) 166, 232
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 2 cut(s) 163, 229
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNSI RCATGY 1 cut(s) 285
BstPAI GACNNNNGTC 1 cut(s) 101
BstV1I GCAGC 2 cut(s) 59, 254
BsuRI GGCC 1 cut(s) 48
BtsCI GGATG 2 cut(s) 87, 105
Cac8I GCNNGC 1 cut(s) 141
CfoI GCGC 1 cut(s) 77
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 46
CseI GACGC 2 cut(s) 91, 200
Csp6I GTAC 1 cut(s) 127
CviAII CATG 2 cut(s) 58, 282
CviJI RGCY 3 cut(s) 48, 72, 268
CviKI_1 RGCY 3 cut(s) 48, 72, 268
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 1 cut(s) 144
DpnI GATC 2 cut(s) 165, 231
DpnII GATC 2 cut(s) 163, 229
FaeI CATG 2 cut(s) 61, 285
FaiI YATR 2 cut(s) 59, 283
FatI CATG 2 cut(s) 57, 281
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 2 cut(s) 73, 243
FokI GGATG 2 cut(s) 74, 92
Fsp4HI GCNGC 2 cut(s) 73, 243
FspBI CTAG 1 cut(s) 286
GlaI GCGC 1 cut(s) 76
GluI GCNGC 2 cut(s) 73, 243
HaeIII GGCC 1 cut(s) 48
HapII CCGG 1 cut(s) 99
HgaI GACGC 2 cut(s) 91, 200
HhaI GCGC 1 cut(s) 77
Hin1I GRCGYC 3 cut(s) 102, 192, 207
Hin1II CATG 2 cut(s) 61, 285
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HincII GTYRAC 2 cut(s) 42, 205
HindII GTYRAC 2 cut(s) 42, 205
HinfI GANTC 1 cut(s) 186
HpaI GTTAAC 1 cut(s) 42
HpaII CCGG 1 cut(s) 99
Hpy166II GTNNAC 2 cut(s) 42, 205
Hpy188I TCNGA 3 cut(s) 168, 234, 255
Hpy188III TCNNGA 3 cut(s) 181, 223, 262
Hpy8I GTNNAC 2 cut(s) 42, 205
Hpy99I CGWCG 3 cut(s) 194, 209, 212
HpyAV CCTTC 2 cut(s) 22, 149
HpyCH4IV ACGT 1 cut(s) 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 1 cut(s) 144
HpySE526I ACGT 1 cut(s) 207
Hsp92I GRCGYC 3 cut(s) 102, 192, 207
Hsp92II CATG 2 cut(s) 61, 285
HspAI GCGC 1 cut(s) 75
KspAI GTTAAC 1 cut(s) 42
Kzo9I GATC 2 cut(s) 163, 229
LpnPI CCDG 2 cut(s) 112, 236
Lsp1109I GCAGC 2 cut(s) 59, 254
MaeI CTAG 1 cut(s) 286
MaeII ACGT 1 cut(s) 207
MalI GATC 2 cut(s) 165, 231
MboI GATC 2 cut(s) 163, 229
MboII GAAGA 1 cut(s) 181
MnlI CCTC 2 cut(s) 58, 139
MseI TTAA 2 cut(s) 41, 131
MspI CCGG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 83
NdeII GATC 2 cut(s) 163, 229
NlaIII CATG 2 cut(s) 61, 285
NspI RCATGY 1 cut(s) 285
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 216
PfeI GAWTC 1 cut(s) 186
PkrI GCNGC 2 cut(s) 74, 244
PshAI GACNNNNGTC 1 cut(s) 101
PspPI GGNCC 1 cut(s) 46
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SalI GTCGAC 1 cut(s) 203
SaqAI TTAA 2 cut(s) 41, 131
SatI GCNGC 2 cut(s) 73, 243
Sau3AI GATC 2 cut(s) 163, 229
Sau96I GGNCC 1 cut(s) 46
ScaI AGTACT 1 cut(s) 128
SetI ASST 2 cut(s) 210, 270
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SspMI CTAG 1 cut(s) 286
TaiI ACGT 1 cut(s) 210
TaqI TCGA 4 cut(s) 123, 189, 204, 210
TatI WGTACW 1 cut(s) 126
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 2 cut(s) 41, 131
Tru9I TTAA 2 cut(s) 41, 131
TseI GCWGC 2 cut(s) 72, 242
TspGWI ACGGA 1 cut(s) 208
XceI RCATGY 1 cut(s) 285
XmiI GTMKAC 1 cut(s) 204
XspI CTAG 1 cut(s) 286
ZraI GACGTC 1 cut(s) 208
ZrmI AGTACT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.