RLG00000001866

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000457
Physical Location & Seq
Forward (+)
22237503 .. 22239576
2074 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001866

Sequence Viewer

Length: 399 bp
ATGATGATTAGATCTTACAAATACTCCAAATGGACGATTGGCTTGATTAGTTCTATATGTAGTGTCAGAACTCACAACATCACCTTGTACAACGTCACCGGCGCCATCCTAGCCAAGGTGATCAAGTACTGCAGGAAGCACGTTGAGGAGGGCGGCAAAGATGCCGAGGAGGACAAGTCCGGCGACCTGCCGTTGAAGGCTTTTGACTCCGAATTCGTCAAGGTCGACCAGAACGTCCTGCTCGACCTCACCTTGGCTGCCGACTATCTGAACATCAAGGGCCTTCTGGACCTGACTAGGCAGACTCTGGCAGGCATGATTGGGAAGGTTCCTGAAGACATGCACGAGCTCATCGGTCTGAAAGAAGCGGAGGAGGTTCGGAAGGAGAGCCAGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

133

Amino Acids

14.82

Weight (kDa)

5.92

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 16 - 48 1.7e-06 Skp1 family, tetramerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
Acc36I ACCTGC 1 cut(s) 195
AccB1I GGYRCC 1 cut(s) 101
AccI GTMKAC 1 cut(s) 225
AciI CCGC 2 cut(s) 153, 368
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 1 cut(s) 354
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 2 cut(s) 89, 128
AfiI CCNNNNNNNGG 2 cut(s) 115, 253
AgsI TTSAA 1 cut(s) 196
AluBI AGCT 1 cut(s) 349
AluI AGCT 1 cut(s) 349
Alw21I GWGCWC 1 cut(s) 351
AlwNI CAGNNNCTG 1 cut(s) 307
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 1 cut(s) 212
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 2 cut(s) 280, 289
AsuHPI GGTGA 4 cut(s) 73, 88, 130, 241
AvaII GGWCC 1 cut(s) 289
BanI GGYRCC 1 cut(s) 101
BanII GRGCYC 1 cut(s) 351
BauI CACGAG 1 cut(s) 344
BbsI GAAGAC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 1 cut(s) 244
BccI CCATC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 175
BclI TGATCA 1 cut(s) 120
BfaI CTAG 2 cut(s) 110, 297
BfmI CTRYAG 1 cut(s) 130
BfoI RGCGCY 1 cut(s) 105
BfuAI ACCTGC 1 cut(s) 195
BglII AGATCT 1 cut(s) 11
BisI GCNGC 2 cut(s) 154, 258
BlsI GCNGC 2 cut(s) 155, 259
BmcAI AGTACT 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 2 cut(s) 280, 289
BmiI GGNNCC 2 cut(s) 103, 330
BmsI GCATC 1 cut(s) 151
BpiI GAAGAC 1 cut(s) 342
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 3 cut(s) 114, 165, 252
BsaXI ACNNNNNCTCC 5 cut(s) 8, 38, 161, 191, 377
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 253
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 391
BseDI CCNNGG 3 cut(s) 114, 165, 252
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 2 cut(s) 115, 253
BseNI ACTGG 1 cut(s) 391
BseRI GAGGAG 3 cut(s) 161, 182, 386
BseXI GCAGC 1 cut(s) 244
BshFI GGCC 1 cut(s) 282
BshNI GGYRCC 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 351
BsiSI CCGG 2 cut(s) 99, 180
BslI CCNNNNNNNGG 2 cut(s) 115, 253
BsnI GGCC 1 cut(s) 282
Bsp1286I GDGCHC 1 cut(s) 351
Bsp1407I TGTACA 1 cut(s) 87
Bsp143I GATC 2 cut(s) 11, 120
BspACI CCGC 2 cut(s) 153, 368
BspANI GGCC 1 cut(s) 282
BspLI GGNNCC 2 cut(s) 103, 330
BspMAI CTGCAG 1 cut(s) 134
BspMI ACCTGC 1 cut(s) 195
BspT107I GGYRCC 1 cut(s) 101
BsrFI RCCGGY 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 87
BsrI ACTGG 1 cut(s) 391
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 3 cut(s) 114, 165, 252
BssMI GATC 2 cut(s) 11, 120
BssNI GRCGYC 1 cut(s) 102
BssSI CACGAG 1 cut(s) 344
BssT1I CCWWGG 2 cut(s) 114, 252
Bst2BI CACGAG 1 cut(s) 344
BstACI GRCGYC 1 cut(s) 102
BstAUI TGTACA 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 313
BstENI CCTNNNNNAGG 1 cut(s) 113
BstF5I GGATG 1 cut(s) 105
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 2 cut(s) 14, 123
BstMBI GATC 2 cut(s) 11, 120
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 343
BstSFI CTRYAG 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 244
BstV2I GAAGAC 1 cut(s) 342
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
BsuRI GGCC 1 cut(s) 282
BtsCI GGATG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 398
BveI ACCTGC 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 313
CaiI CAGNNNCTG 1 cut(s) 307
CfoI GCGC 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 2 cut(s) 280, 289
Csp6I GTAC 2 cut(s) 88, 127
CviAII CATG 2 cut(s) 316, 340
CviJI RGCY 7 cut(s) 42, 113, 200, 257, 282, 349, 390
CviKI_1 RGCY 7 cut(s) 42, 113, 200, 257, 282, 349, 390
CviQI GTAC 2 cut(s) 88, 127
DinI GGCGCC 1 cut(s) 103
DpnI GATC 2 cut(s) 13, 122
DpnII GATC 2 cut(s) 11, 120
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
Ecl136II GAGCTC 1 cut(s) 349
Eco130I CCWWGG 2 cut(s) 114, 252
Eco24I GRGCYC 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 289
Eco53kI GAGCTC 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 354
EcoICRI GAGCTC 1 cut(s) 349
EcoNI CCTNNNNNAGG 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 280
EcoRI GAATTC 1 cut(s) 212
EcoT14I CCWWGG 2 cut(s) 114, 252
EcoT38I GRGCYC 1 cut(s) 351
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
ErhI CCWWGG 2 cut(s) 114, 252
FaeI CATG 2 cut(s) 319, 343
FaiI YATR 4 cut(s) 56, 58, 317, 341
FatI CATG 2 cut(s) 315, 339
FbaI TGATCA 1 cut(s) 120
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 154, 258
FokI GGATG 1 cut(s) 92
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 2 cut(s) 154, 258
FspBI CTAG 2 cut(s) 110, 297
GlaI GCGC 1 cut(s) 103
GluI GCNGC 2 cut(s) 154, 258
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 1 cut(s) 282
HapII CCGG 2 cut(s) 99, 180
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 2 cut(s) 319, 343
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 2 cut(s) 206, 304
HpaII CCGG 2 cut(s) 99, 180
HphI GGTGA 4 cut(s) 73, 88, 130, 241
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 5 cut(s) 68, 211, 270, 360, 381
Hpy188III TCNNGA 2 cut(s) 287, 332
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 4 cut(s) 190, 293, 319, 376
HpyCH4IV ACGT 3 cut(s) 93, 141, 234
HpyCH4V TGCA 2 cut(s) 132, 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpySE526I ACGT 3 cut(s) 93, 141, 234
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 2 cut(s) 319, 343
HspAI GCGC 1 cut(s) 102
KasI GGCGCC 1 cut(s) 101
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 2 cut(s) 11, 120
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 1 cut(s) 151
MaeI CTAG 2 cut(s) 110, 297
MaeII ACGT 3 cut(s) 93, 141, 234
MaeIII GTNAC 1 cut(s) 94
MalI GATC 2 cut(s) 13, 122
MboI GATC 2 cut(s) 11, 120
MboII GAAGA 1 cut(s) 347
MflI RGATCY 1 cut(s) 11
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 1 cut(s) 212
Mly113I GGCGCC 1 cut(s) 102
MlyI GAGTC 2 cut(s) 200, 298
MnlI CCTC 7 cut(s) 139, 142, 160, 163, 257, 364, 367
MseI TTAA 1 cut(s) 397
MspI CCGG 2 cut(s) 99, 180
MwoI GCNNNNNNNGC 1 cut(s) 110
NarI GGCGCC 1 cut(s) 102
NdeII GATC 2 cut(s) 11, 120
NlaIII CATG 2 cut(s) 319, 343
NlaIV GGNNCC 2 cut(s) 103, 330
NmeAIII GCCGAG 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 94
NspI RCATGY 1 cut(s) 343
PcsI WCGNNNNNNNCGW 3 cut(s) 222, 231, 240
PkrI GCNGC 2 cut(s) 155, 259
PleI GAGTC 2 cut(s) 200, 298
PluTI GGCGCC 1 cut(s) 105
PpsI GAGTC 2 cut(s) 200, 298
Psp124BI GAGCTC 1 cut(s) 351
PspN4I GGNNCC 2 cut(s) 103, 330
PspPI GGNCC 2 cut(s) 280, 289
PstI CTGCAG 1 cut(s) 134
PstNI CAGNNNCTG 1 cut(s) 307
PsuI RGATCY 1 cut(s) 11
RsaI GTAC 2 cut(s) 89, 128
RsaNI GTAC 2 cut(s) 88, 127
SacI GAGCTC 1 cut(s) 351
SalI GTCGAC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 397
SatI GCNGC 2 cut(s) 154, 258
Sau3AI GATC 2 cut(s) 11, 120
Sau96I GGNCC 2 cut(s) 280, 289
ScaI AGTACT 1 cut(s) 128
SchI GAGTC 2 cut(s) 200, 298
SduI GDGCHC 1 cut(s) 351
SfaNI GCATC 1 cut(s) 151
SfcI CTRYAG 1 cut(s) 130
SfoI GGCGCC 1 cut(s) 103
SgrAI CRCCGGYG 1 cut(s) 98
SinI GGWCC 1 cut(s) 289
Sse9I AATT 1 cut(s) 212
SsiI CCGC 2 cut(s) 153, 368
SspDI GGCGCC 1 cut(s) 101
SspMI CTAG 2 cut(s) 110, 297
SstI GAGCTC 1 cut(s) 351
StyI CCWWGG 2 cut(s) 114, 252
TaiI ACGT 3 cut(s) 96, 144, 237
TaqI TCGA 2 cut(s) 225, 243
TaqII GACCGA 1 cut(s) 344
TasI AATT 1 cut(s) 212
TatI WGTACW 2 cut(s) 87, 126
TauI GCSGC 1 cut(s) 156
Tru1I TTAA 1 cut(s) 397
Tru9I TTAA 1 cut(s) 397
TscAI CASTG 1 cut(s) 398
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 94
TspRI CASTG 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 289
XagI CCTNNNNNAGG 1 cut(s) 113
XapI RAATTY 1 cut(s) 212
XceI RCATGY 1 cut(s) 343
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 2 cut(s) 110, 297
ZrmI AGTACT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.