Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000457

Physical Location & Seq

Genomic Coordinates Forward (+)

64982479 .. 64982967

Gene Structure 489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015360

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTCGACTGAAATTGGGAACAAGAAGCTAACCCTGACCAGCTTCGACGGAGCTAACTTCGAGATTAGAGAGGCGGTTGCCCTTGAATCACAGACCATCAAGCACATGGTGGAGGACGGCTGCGCTGATAATGCGATCCCCTTGCCGAACGTCTCCGGCAGAATCCTAGCCAAGGTCATCGAGTACTGCAACAGGCACGTTGAGGACAAGGAAAGCAAGAATGAAGACAATAAGAATGATAAGGAGGAGTCTGTCAAGAAATTCGACGCAGAGTTCGTGAAAGTCGACCAGGGCGTCCTGTTCGAACTGATATTGGCAGCAAACTATCTGAACATCAAGGGGTTGCTCGACTTGACATGCCAGACAGTGGCAGACATGATAAAGGGAAAGACTCCCGAAGAGATTCGCAAGACTTTCAACATCAAGAATGACTTCACTCCTGAGGAAGAAGAGGAGGTTCGAAGGGAGAACCAATGGGCTTTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

163

Amino Acids

18.47

Weight (kDa)

4.79

Isoelectric Point (pI)

48.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	8 - 67	2.4e-25	Skp1 family, tetramerisation domain
Skp1	PF01466	113 - 160	4.7e-32	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca	FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica	MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica	Prupe.8G166100_v2.0.a1
pyrus_communis	pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis	RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata	RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora	Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa	Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha	Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana	Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
AccB7I	CCANNNNNTGG	1 cut(s)	367
AccI	GTMKAC	2 cut(s)	5, 285
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	260
AcyI	GRCGYC	1 cut(s)	294
AdeI	CACNNNGTG	1 cut(s)	109
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	2 cut(s)	172, 367
AgsI	TTSAA	2 cut(s)	86, 418
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	3 cut(s)	28, 42, 53
AluI	AGCT	3 cut(s)	28, 42, 53
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	120, 317
ApoI	RAATTY	1 cut(s)	260
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
Asp700I	GAANNNNTTC	2 cut(s)	402, 431
AspLEI	GCGC	1 cut(s)	125
AsuII	TTCGAA	2 cut(s)	303, 460
AxyI	CCTNAGG	1 cut(s)	441
BbsI	GAAGAC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	107, 329
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	1 cut(s)	133
BcgI	CGANNNNNNTGC	2 cut(s)	124, 158
BciT130I	CCWGG	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	167
BisI	GCNGC	2 cut(s)	121, 318
BlsI	GCNGC	2 cut(s)	122, 319
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	290
BmrFI	CCNGG	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	231
Bpu14I	TTCGAA	2 cut(s)	303, 460
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	171, 289
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 367
Bse21I	CCTNAGG	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	2 cut(s)	171, 289
BseLI	CCNNNNNNNGG	2 cut(s)	172, 367
BseMII	CTCAG	1 cut(s)	432
BseRI	GAGGAG	2 cut(s)	260, 467
BseXI	GCAGC	2 cut(s)	107, 329
BsiSI	CCGG	1 cut(s)	156
BslI	CCNNNNNNNGG	2 cut(s)	172, 367
BsmAI	GTCTC	1 cut(s)	157
BsmBI	CGTCTC	1 cut(s)	157
Bsp119I	TTCGAA	2 cut(s)	303, 460
Bsp143I	GATC	1 cut(s)	135
BspACI	CCGC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	433
BspPI	GGATC	1 cut(s)	130
BspT104I	TTCGAA	2 cut(s)	303, 460
BssECI	CCNNGG	2 cut(s)	171, 289
BssMI	GATC	1 cut(s)	135
BssNI	GRCGYC	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	2 cut(s)	393, 444
BstACI	GRCGYC	1 cut(s)	294
BstBI	TTCGAA	2 cut(s)	303, 460
BstDEI	CTNAG	1 cut(s)	441
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	1 cut(s)	138
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNI	CCWGG	1 cut(s)	290
BstNSI	RCATGY	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	107, 329
BstV2I	GAAGAC	1 cut(s)	231
Bsu36I	CCTNAGG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	372
CfoI	GCGC	1 cut(s)	125
CseI	GACGC	2 cut(s)	275, 283
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	3 cut(s)	106, 357, 376
CviJI	RGCY	6 cut(s)	28, 42, 53, 120, 170, 479
CviKI_1	RGCY	6 cut(s)	28, 42, 53, 120, 170, 479
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	1 cut(s)	441
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
DraIII	CACNNNGTG	1 cut(s)	109
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
Eam1104I	CTCTTC	2 cut(s)	393, 444
EarI	CTCTTC	2 cut(s)	393, 444
Eco130I	CCWWGG	1 cut(s)	171
Eco81I	CCTNAGG	1 cut(s)	441
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	171
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	3 cut(s)	109, 360, 379
FaiI	YATR	3 cut(s)	107, 358, 377
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FatI	CATG	3 cut(s)	105, 356, 375
FblI	GTMKAC	2 cut(s)	5, 285
Fnu4HI	GCNGC	2 cut(s)	121, 318
Fsp4HI	GCNGC	2 cut(s)	121, 318
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	2 cut(s)	121, 318
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	2 cut(s)	275, 283
HhaI	GCGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	3 cut(s)	109, 360, 379
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HincII	GTYRAC	2 cut(s)	6, 286
HindII	GTYRAC	2 cut(s)	6, 286
HinfI	GANTC	5 cut(s)	86, 162, 248, 391, 403
HpaII	CCGG	1 cut(s)	156
Hpy166II	GTNNAC	2 cut(s)	6, 286
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	6 cut(s)	61, 256, 277, 395, 424, 440
Hpy8I	GTNNAC	2 cut(s)	6, 286
Hpy99I	CGWCG	2 cut(s)	50, 269
HpyAV	CCTTC	1 cut(s)	456
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4IV	ACGT	2 cut(s)	150, 198
HpyCH4V	TGCA	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	441
HpySE526I	ACGT	2 cut(s)	150, 198
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	3 cut(s)	109, 360, 379
HspAI	GCGC	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	135
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	9 cut(s)	47, 52, 169, 178, 275, 302, 311, 374, 453
Lsp1109I	GCAGC	2 cut(s)	107, 329
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	2 cut(s)	150, 198
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MboII	GAAGA	4 cut(s)	236, 410, 458, 461
MluCI	AATT	2 cut(s)	12, 260
MlyI	GAGTC	2 cut(s)	257, 385
MnlI	CCTC	7 cut(s)	64, 106, 196, 238, 436, 445, 448
MroXI	GAANNNNTTC	2 cut(s)	402, 431
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeII	GATC	1 cut(s)	135
NlaIII	CATG	3 cut(s)	109, 360, 379
NspI	RCATGY	1 cut(s)	360
NspV	TTCGAA	2 cut(s)	303, 460
PcsI	WCGNNNNNNNCGW	3 cut(s)	273, 282, 291
PdmI	GAANNNNTTC	2 cut(s)	402, 431
PfeI	GAWTC	3 cut(s)	86, 162, 403
PflMI	CCANNNNNTGG	1 cut(s)	367
PkrI	GCNGC	2 cut(s)	122, 319
PleI	GAGTC	2 cut(s)	256, 385
PpsI	GAGTC	2 cut(s)	256, 385
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SalI	GTCGAC	2 cut(s)	4, 284
SatI	GCNGC	2 cut(s)	121, 318
Sau3AI	GATC	1 cut(s)	135
ScaI	AGTACT	1 cut(s)	185
SchI	GAGTC	2 cut(s)	257, 385
ScrFI	CCNGG	1 cut(s)	290
SetI	ASST	7 cut(s)	30, 44, 55, 153, 177, 201, 459
SfuI	TTCGAA	2 cut(s)	303, 460
Sse9I	AATT	2 cut(s)	12, 260
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	288
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	367
TaiI	ACGT	2 cut(s)	153, 201
TaqI	TCGA	9 cut(s)	5, 45, 60, 180, 264, 285, 303, 348, 460
TasI	AATT	2 cut(s)	12, 260
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	3 cut(s)	86, 162, 403
TscAI	CASTG	1 cut(s)	372
TseI	GCWGC	2 cut(s)	120, 317
TspDTI	ATGAA	1 cut(s)	237
TspGWI	ACGGA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	372
Van91I	CCANNNNNTGG	1 cut(s)	367
XagI	CCTNNNNNAGG	1 cut(s)	170
XapI	RAATTY	1 cut(s)	260
XceI	RCATGY	1 cut(s)	360
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XmiI	GTMKAC	2 cut(s)	5, 285
XmnI	GAANNNNTTC	2 cut(s)	402, 431
XspI	CTAG	1 cut(s)	167
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.