Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8353759.1

Orthogroup ID

OG0000457

Physical Location & Seq

Genomic Coordinates Forward (+)

287 .. 802

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8353759.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgtcgtcaaaaattgacaaccctgcagaaaccacatcatcaaacaccgaaaaccctgctgcaatcacatcgtcggataagaagattataaccctgaagagctccgatgaagagactttcgatattgaagaggtggtggcccttgaatcgcagacaatcaagcacatggtggaggatgactgcgtcgacaatggcatccctctgccgaatgtgacaggtgccattctagccaaggttattgagtattgcaagaagcacgtagaggaggggaccgcggagctcaagacttgggaccgtaagtacatcgacgtcgaccagaacgtactctttgatctcatattggcagccaactatctgaatataaaagggctgctggacttggcttgccagcaagcggcggacatgatcaagggaaagactccggaggagattcgcaaaactttcaacatcaagaatgacttcactcctgaggaagaagaggaggttcagagggagaaccaatgggcttttgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0019005 GO:0019538 GO:0019941 GO:0030163 GO:0031461 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0065007 GO:0070647 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

171

Amino Acids

19.27

Weight (kDa)

4.45

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca	FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica	MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica	Prupe.8G166100_v2.0.a1
pyrus_communis	pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis	RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata	RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora	Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa	Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha	Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana	Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AatII	GACGTC	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	218
AccI	GTMKAC	2 cut(s)	186, 312
AccII	CGCG	1 cut(s)	275
AccIII	TCCGGA	1 cut(s)	421
AciI	CCGC	4 cut(s)	273, 275, 395, 398
AcuI	CTGAAG	1 cut(s)	116
AcyI	GRCGYC	1 cut(s)	309
AdeI	CACNNNGTG	1 cut(s)	169
AfaI	GTAC	2 cut(s)	302, 324
AfiI	CCNNNNNNNGG	1 cut(s)	394
AgsI	TTSAA	3 cut(s)	128, 146, 445
AluBI	AGCT	2 cut(s)	102, 280
AluI	AGCT	2 cut(s)	102, 280
Alw21I	GWGCWC	2 cut(s)	104, 282
Alw26I	GTCTC	1 cut(s)	107
Aor13HI	TCCGGA	1 cut(s)	421
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	3 cut(s)	59, 344, 370
Asp700I	GAANNNNTTC	1 cut(s)	458
AspS9I	GGNCC	3 cut(s)	139, 270, 292
AvaII	GGWCC	2 cut(s)	270, 292
AxyI	CCTNAGG	1 cut(s)	468
BanI	GGYRCC	1 cut(s)	218
BanII	GRGCYC	2 cut(s)	104, 282
Bbv12I	GWGCWC	2 cut(s)	104, 282
BbvI	GCAGC	3 cut(s)	46, 356, 357
BcgI	CGANNNNNNTGC	4 cut(s)	38, 51, 72, 85
BclI	TGATCA	1 cut(s)	405
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	24
BisI	GCNGC	4 cut(s)	60, 345, 371, 396
BlsI	GCNGC	4 cut(s)	61, 346, 372, 397
Bme18I	GGWCC	2 cut(s)	270, 292
BmgT120I	GGNCC	3 cut(s)	139, 270, 292
BmiI	GGNNCC	3 cut(s)	220, 271, 293
BmsI	GCATC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	266
BsaAI	YACGTR	1 cut(s)	259
BsaHI	GRCGYC	1 cut(s)	309
BsaJI	CCNNGG	2 cut(s)	231, 273
BsaWI	WCCGGW	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse21I	CCTNAGG	1 cut(s)	468
BseAI	TCCGGA	1 cut(s)	421
BseDI	CCNNGG	2 cut(s)	231, 273
BseGI	GGATG	2 cut(s)	181, 195
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseMII	CTCAG	1 cut(s)	459
BseRI	GAGGAG	3 cut(s)	278, 440, 494
BseXI	GCAGC	3 cut(s)	46, 356, 357
Bsh1236I	CGCG	1 cut(s)	275
BshFI	GGCC	1 cut(s)	140
BshNI	GGYRCC	1 cut(s)	218
BsiHKAI	GWGCWC	2 cut(s)	104, 282
BsiSI	CCGG	1 cut(s)	422
BslFI	GGGAC	2 cut(s)	283, 305
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmAI	GTCTC	1 cut(s)	107
BsmFI	GGGAC	2 cut(s)	283, 305
BsnI	GGCC	1 cut(s)	140
Bsp1286I	GDGCHC	2 cut(s)	104, 282
Bsp13I	TCCGGA	1 cut(s)	421
Bsp143I	GATC	2 cut(s)	331, 405
BspACI	CCGC	4 cut(s)	273, 275, 395, 398
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	460
BspEI	TCCGGA	1 cut(s)	421
BspFNI	CGCG	1 cut(s)	275
BspLI	GGNNCC	3 cut(s)	220, 271, 293
BspMAI	CTGCAG	1 cut(s)	28
BspQI	GCTCTTC	1 cut(s)	92
BspT107I	GGYRCC	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	231, 273
BssMI	GATC	2 cut(s)	331, 405
BssNI	GRCGYC	1 cut(s)	309
BssT1I	CCWWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	4 cut(s)	92, 105, 123, 471
BstACI	GRCGYC	1 cut(s)	309
BstBAI	YACGTR	1 cut(s)	259
BstC8I	GCNNGC	3 cut(s)	385, 389, 393
BstDEI	CTNAG	1 cut(s)	468
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	2 cut(s)	181, 195
BstFNI	CGCG	1 cut(s)	275
BstKTI	GATC	2 cut(s)	334, 408
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	331, 405
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstSFI	CTRYAG	1 cut(s)	24
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	3 cut(s)	46, 356, 357
Bsu36I	CCTNAGG	1 cut(s)	468
BsuRI	GGCC	1 cut(s)	140
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	2 cut(s)	181, 195
Cac8I	GCNNGC	3 cut(s)	385, 389, 393
Cfr13I	GGNCC	3 cut(s)	139, 270, 292
Cfr42I	CCGCGG	1 cut(s)	276
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	301, 323
CviAII	CATG	2 cut(s)	166, 403
CviJI	RGCY	8 cut(s)	102, 140, 230, 280, 347, 370, 383, 506
CviKI_1	RGCY	8 cut(s)	102, 140, 230, 280, 347, 370, 383, 506
CviQI	GTAC	2 cut(s)	301, 323
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	2 cut(s)	333, 407
DpnII	GATC	2 cut(s)	331, 405
DraIII	CACNNNGTG	1 cut(s)	169
Eam1104I	CTCTTC	4 cut(s)	92, 105, 123, 471
EarI	CTCTTC	4 cut(s)	92, 105, 123, 471
EciI	GGCGGA	1 cut(s)	413
Ecl136II	GAGCTC	2 cut(s)	102, 280
Eco130I	CCWWGG	1 cut(s)	231
Eco24I	GRGCYC	2 cut(s)	104, 282
Eco47I	GGWCC	2 cut(s)	270, 292
Eco53kI	GAGCTC	2 cut(s)	102, 280
Eco57I	CTGAAG	1 cut(s)	116
Eco81I	CCTNAGG	1 cut(s)	468
EcoICRI	GAGCTC	2 cut(s)	102, 280
EcoT14I	CCWWGG	1 cut(s)	231
EcoT38I	GRGCYC	2 cut(s)	104, 282
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	2 cut(s)	169, 406
FaiI	YATR	5 cut(s)	89, 167, 338, 362, 404
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FaqI	GGGAC	2 cut(s)	283, 305
FatI	CATG	2 cut(s)	165, 402
FbaI	TGATCA	1 cut(s)	405
FblI	GTMKAC	2 cut(s)	186, 312
Fnu4HI	GCNGC	4 cut(s)	60, 345, 371, 396
FokI	GGATG	2 cut(s)	182, 188
FriOI	GRGCYC	2 cut(s)	104, 282
Fsp4HI	GCNGC	4 cut(s)	60, 345, 371, 396
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	4 cut(s)	60, 345, 371, 396
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	1 cut(s)	422
HgaI	GACGC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	2 cut(s)	169, 406
HincII	GTYRAC	2 cut(s)	187, 313
HindII	GTYRAC	2 cut(s)	187, 313
HinfI	GANTC	3 cut(s)	146, 418, 430
HpaII	CCGG	1 cut(s)	422
Hpy166II	GTNNAC	2 cut(s)	187, 313
Hpy188I	TCNGA	4 cut(s)	76, 106, 357, 489
Hpy188III	TCNNGA	4 cut(s)	283, 422, 451, 467
Hpy8I	GTNNAC	2 cut(s)	187, 313
Hpy99I	CGWCG	4 cut(s)	76, 188, 311, 314
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	3 cut(s)	258, 309, 321
HpyCH4V	TGCA	3 cut(s)	26, 62, 249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	1 cut(s)	468
HpySE526I	ACGT	3 cut(s)	258, 309, 321
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	2 cut(s)	169, 406
Kpn2I	TCCGGA	1 cut(s)	421
Ksp22I	TGATCA	1 cut(s)	405
KspI	CCGCGG	1 cut(s)	276
Kzo9I	GATC	2 cut(s)	331, 405
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	2 cut(s)	107, 277
LpnPI	CCDG	9 cut(s)	36, 69, 107, 201, 329, 359, 401, 435, 480
Lsp1109I	GCAGC	3 cut(s)	46, 356, 357
LweI	GCATC	1 cut(s)	204
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	3 cut(s)	258, 309, 321
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	2 cut(s)	333, 407
MboI	GATC	2 cut(s)	331, 405
MboII	GAAGA	6 cut(s)	94, 109, 122, 140, 485, 488
MhlI	GDGCHC	2 cut(s)	104, 282
MluCI	AATT	1 cut(s)	12
MlyI	GAGTC	1 cut(s)	412
MmeI	TCCRAC	1 cut(s)	54
MroI	TCCGGA	1 cut(s)	421
MroXI	GAANNNNTTC	1 cut(s)	458
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	1 cut(s)	422
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeII	GATC	2 cut(s)	331, 405
NlaIII	CATG	2 cut(s)	169, 406
NlaIV	GGNNCC	3 cut(s)	220, 271, 293
NmuCI	GTSAC	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	92
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	2 cut(s)	146, 430
PflFI	GACNNNGTC	1 cut(s)	182
PkrI	GCNGC	4 cut(s)	61, 346, 372, 397
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
Ppu21I	YACGTR	1 cut(s)	259
PsiI	TTATAA	1 cut(s)	89
Psp124BI	GAGCTC	2 cut(s)	104, 282
PspN4I	GGNNCC	3 cut(s)	220, 271, 293
PspPI	GGNCC	3 cut(s)	139, 270, 292
PstI	CTGCAG	1 cut(s)	28
PsyI	GACNNNGTC	1 cut(s)	182
RsaI	GTAC	2 cut(s)	302, 324
RsaNI	GTAC	2 cut(s)	301, 323
SacI	GAGCTC	2 cut(s)	104, 282
SacII	CCGCGG	1 cut(s)	276
SalI	GTCGAC	2 cut(s)	185, 311
SapI	GCTCTTC	1 cut(s)	92
SatI	GCNGC	4 cut(s)	60, 345, 371, 396
Sau3AI	GATC	2 cut(s)	331, 405
Sau96I	GGNCC	3 cut(s)	139, 270, 292
SchI	GAGTC	1 cut(s)	412
SduI	GDGCHC	2 cut(s)	104, 282
SetI	ASST	9 cut(s)	104, 135, 220, 237, 261, 282, 312, 324, 486
SfaNI	GCATC	1 cut(s)	204
SfcI	CTRYAG	1 cut(s)	24
Sfr303I	CCGCGG	1 cut(s)	276
SgrBI	CCGCGG	1 cut(s)	276
SinI	GGWCC	2 cut(s)	270, 292
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	1 cut(s)	12
SsiI	CCGC	4 cut(s)	273, 275, 395, 398
SspMI	CTAG	1 cut(s)	227
SstI	GAGCTC	2 cut(s)	104, 282
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	3 cut(s)	261, 312, 324
TaqI	TCGA	4 cut(s)	120, 186, 306, 312
TasI	AATT	1 cut(s)	12
TatI	WGTACW	1 cut(s)	300
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	2 cut(s)	146, 430
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	3 cut(s)	59, 344, 370
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	123
Tth111I	GACNNNGTC	1 cut(s)	182
VpaK11BI	GGWCC	2 cut(s)	270, 292
XmiI	GTMKAC	2 cut(s)	186, 312
XmnI	GAANNNNTTC	1 cut(s)	458
XspI	CTAG	1 cut(s)	227
ZraI	GACGTC	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.