Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000457

Physical Location & Seq

Genomic Coordinates Forward (+)

13925430 .. 13926131

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g22600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTCGTCGAATACTGAAAACCCTGCTGCAACCACATCGTCCACGTCATCAGAGAAGAAGATGATAACCCTGCAGAGCGCCGATGGAGAGCCTTTTGAGATTGAAGAGGTGGTGGCCCTTGAATCGCAGACGATCAAGCACATGGTGGAGGATGACTGCGCAGAGAATGCCATCCCTCTGCCGAATGTGAAAGGTGCCATTCTAGCCAAGGTTATCGAGTACTGCAAGAAGCACGTAGAGGACGCCGGCGAGGACCTGAAGGCTTGGGACGCTGAGTATGTCAACGTCGACCAAAACGTACTGTTTGATCTGATATTGGCGGCAAACTATCTGAATATTAAAGGGCTGCTGGACTTGACTTGCCAGAAAGTGGCGGACATGATCAAGGGTAAAACTCCGGAGGAGATTCGAACATTGTTCAACATCACCAATGACTTCACTCCTGAGGAAGAAGAGGAGGTCCGAAGGGAGAACCAATGGGCCTTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0019005 GO:0019538 GO:0019941 GO:0030163 GO:0031461 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0065007 GO:0070647 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

164

Amino Acids

18.25

Weight (kDa)

4.38

Isoelectric Point (pI)

56.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	20 - 79	1.1e-28	Skp1 family, tetramerisation domain
Skp1	PF01466	114 - 161	3.7e-31	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca	FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica	MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica	Prupe.8G166100_v2.0.a1
pyrus_communis	pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis	RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata	RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora	Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa	Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha	Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana	Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	160
AccB1I	GGYRCC	1 cut(s)	194
AccB7I	CCANNNNNTGG	1 cut(s)	370
AccI	GTMKAC	1 cut(s)	288
AccIII	TCCGGA	1 cut(s)	397
AciI	CCGC	2 cut(s)	320, 374
AcuI	CTGAAG	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	243
AdeI	CACNNNGTG	1 cut(s)	145
AfaI	GTAC	2 cut(s)	221, 300
AfiI	CCNNNNNNNGG	1 cut(s)	370
AgsI	TTSAA	3 cut(s)	104, 122, 421
AjiI	CACGTC	1 cut(s)	45
Aor13HI	TCCGGA	1 cut(s)	397
AoxI	GGCC	2 cut(s)	114, 480
ApeKI	GCWGC	2 cut(s)	26, 346
AspLEI	GCGC	2 cut(s)	80, 161
AspS9I	GGNCC	4 cut(s)	115, 253, 460, 480
AsuHPI	GGTGA	1 cut(s)	418
AsuII	TTCGAA	1 cut(s)	409
AvaII	GGWCC	2 cut(s)	253, 460
AxyI	CCTNAGG	1 cut(s)	444
BanI	GGYRCC	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	13, 333
BccI	CCATC	2 cut(s)	77, 179
BcgI	CGANNNNNNTGC	2 cut(s)	18, 52
BclI	TGATCA	1 cut(s)	381
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	71
BfoI	RGCGCY	1 cut(s)	81
BisI	GCNGC	3 cut(s)	27, 321, 347
BlsI	GCNGC	3 cut(s)	28, 322, 348
BmcAI	AGTACT	1 cut(s)	221
Bme18I	GGWCC	2 cut(s)	253, 460
BmgBI	CACGTC	1 cut(s)	45
BmgT120I	GGNCC	4 cut(s)	115, 253, 460, 480
BmiI	GGNNCC	1 cut(s)	196
Bpu14I	TTCGAA	1 cut(s)	409
BsaAI	YACGTR	1 cut(s)	235
BsaHI	GRCGYC	1 cut(s)	243
BsaJI	CCNNGG	2 cut(s)	207, 483
BsaWI	WCCGGW	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
Bse118I	RCCGGY	1 cut(s)	245
Bse21I	CCTNAGG	1 cut(s)	444
BseAI	TCCGGA	1 cut(s)	397
BseDI	CCNNGG	2 cut(s)	207, 483
BseGI	GGATG	2 cut(s)	157, 171
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseMII	CTCAG	2 cut(s)	264, 435
BseRI	GAGGAG	2 cut(s)	416, 470
BseXI	GCAGC	2 cut(s)	13, 333
BshFI	GGCC	2 cut(s)	116, 482
BshNI	GGYRCC	1 cut(s)	194
BsiSI	CCGG	2 cut(s)	246, 398
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	281
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	2 cut(s)	116, 482
Bsp119I	TTCGAA	1 cut(s)	409
Bsp13I	TCCGGA	1 cut(s)	397
Bsp143I	GATC	3 cut(s)	132, 307, 381
BspACI	CCGC	2 cut(s)	320, 374
BspANI	GGCC	2 cut(s)	116, 482
BspCNI	CTCAG	2 cut(s)	265, 436
BspEI	TCCGGA	1 cut(s)	397
BspLI	GGNNCC	1 cut(s)	196
BspMAI	CTGCAG	1 cut(s)	75
BspT104I	TTCGAA	1 cut(s)	409
BspT107I	GGYRCC	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	245
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	2 cut(s)	207, 483
BssMI	GATC	3 cut(s)	132, 307, 381
BssNI	GRCGYC	1 cut(s)	243
BssT1I	CCWWGG	2 cut(s)	207, 483
Bst4CI	ACNGT	1 cut(s)	303
Bst6I	CTCTTC	2 cut(s)	99, 447
BstACI	GRCGYC	1 cut(s)	243
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstBAI	YACGTR	1 cut(s)	235
BstBI	TTCGAA	1 cut(s)	409
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	2 cut(s)	273, 444
BstF5I	GGATG	2 cut(s)	157, 171
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	2 cut(s)	80, 161
BstKTI	GATC	3 cut(s)	135, 310, 384
BstMBI	GATC	3 cut(s)	132, 307, 381
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 203, 269
BstSFI	CTRYAG	1 cut(s)	71
BstV1I	GCAGC	2 cut(s)	13, 333
Bsu36I	CCTNAGG	1 cut(s)	444
BsuRI	GGCC	2 cut(s)	116, 482
BtrI	CACGTC	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	157, 171
Cac8I	GCNNGC	1 cut(s)	247
CfoI	GCGC	2 cut(s)	80, 161
Cfr10I	RCCGGY	1 cut(s)	245
Cfr13I	GGNCC	4 cut(s)	115, 253, 460, 480
CseI	GACGC	2 cut(s)	251, 278
Csp6I	GTAC	2 cut(s)	220, 299
CviAII	CATG	2 cut(s)	142, 379
CviJI	RGCY	6 cut(s)	91, 116, 206, 263, 346, 482
CviKI_1	RGCY	6 cut(s)	91, 116, 206, 263, 346, 482
CviQI	GTAC	2 cut(s)	220, 299
DdeI	CTNAG	2 cut(s)	273, 444
DpnI	GATC	3 cut(s)	134, 309, 383
DpnII	GATC	3 cut(s)	132, 307, 381
DraIII	CACNNNGTG	1 cut(s)	145
Eam1104I	CTCTTC	2 cut(s)	99, 447
EarI	CTCTTC	2 cut(s)	99, 447
EciI	GGCGGA	1 cut(s)	389
Eco130I	CCWWGG	2 cut(s)	207, 483
Eco47I	GGWCC	2 cut(s)	253, 460
Eco57I	CTGAAG	1 cut(s)	278
Eco81I	CCTNAGG	1 cut(s)	444
EcoO109I	RGGNCCY	1 cut(s)	253
EcoT14I	CCWWGG	2 cut(s)	207, 483
ErhI	CCWWGG	2 cut(s)	207, 483
FaeI	CATG	2 cut(s)	145, 382
FaiI	YATR	3 cut(s)	143, 279, 380
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	2 cut(s)	141, 378
FbaI	TGATCA	1 cut(s)	381
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	3 cut(s)	27, 321, 347
FokI	GGATG	2 cut(s)	158, 164
Fsp4HI	GCNGC	3 cut(s)	27, 321, 347
FspBI	CTAG	1 cut(s)	203
FspI	TGCGCA	1 cut(s)	160
GlaI	GCGC	2 cut(s)	79, 160
GluI	GCNGC	3 cut(s)	27, 321, 347
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	116, 482
HapII	CCGG	2 cut(s)	246, 398
HgaI	GACGC	2 cut(s)	251, 278
HhaI	GCGC	2 cut(s)	80, 161
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	2 cut(s)	145, 382
Hin6I	GCGC	2 cut(s)	78, 159
HinP1I	GCGC	2 cut(s)	78, 159
HincII	GTYRAC	2 cut(s)	283, 289
HindII	GTYRAC	2 cut(s)	283, 289
HinfI	GANTC	2 cut(s)	122, 406
HpaII	CCGG	2 cut(s)	246, 398
HphI	GGTGA	1 cut(s)	418
Hpy166II	GTNNAC	3 cut(s)	42, 283, 289
Hpy188I	TCNGA	4 cut(s)	52, 312, 333, 464
Hpy188III	TCNNGA	2 cut(s)	398, 443
Hpy8I	GTNNAC	3 cut(s)	42, 283, 289
Hpy99I	CGWCG	2 cut(s)	10, 290
HpyAV	CCTTC	2 cut(s)	253, 459
HpyCH4III	ACNGT	1 cut(s)	303
HpyCH4IV	ACGT	4 cut(s)	44, 234, 285, 297
HpyCH4V	TGCA	3 cut(s)	29, 73, 225
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 203, 269
HpyF3I	CTNAG	2 cut(s)	273, 444
HpySE526I	ACGT	4 cut(s)	44, 234, 285, 297
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	145, 382
HspAI	GCGC	2 cut(s)	78, 159
Kpn2I	TCCGGA	1 cut(s)	397
KroI	GCCGGC	1 cut(s)	245
KroNI	GCCGGC	1 cut(s)	247
Ksp22I	TGATCA	1 cut(s)	381
Kzo9I	GATC	3 cut(s)	132, 307, 381
LpnPI	CCDG	8 cut(s)	36, 83, 259, 269, 335, 377, 411, 456
Lsp1109I	GCAGC	2 cut(s)	13, 333
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	4 cut(s)	44, 234, 285, 297
MalI	GATC	3 cut(s)	134, 309, 383
MboI	GATC	3 cut(s)	132, 307, 381
MboII	GAAGA	5 cut(s)	67, 70, 116, 461, 464
MnlI	CCTC	9 cut(s)	100, 142, 186, 232, 244, 394, 439, 448, 451
MreI	CGCCGGCG	1 cut(s)	245
MroI	TCCGGA	1 cut(s)	397
MroNI	GCCGGC	1 cut(s)	245
MseI	TTAA	1 cut(s)	339
MspI	CCGG	2 cut(s)	246, 398
Mva1269I	GAATGC	1 cut(s)	172
MwoI	GCNNNNNNNGC	3 cut(s)	167, 203, 269
NaeI	GCCGGC	1 cut(s)	247
NdeII	GATC	3 cut(s)	132, 307, 381
NgoMIV	GCCGGC	1 cut(s)	245
NlaIII	CATG	2 cut(s)	145, 382
NlaIV	GGNNCC	1 cut(s)	196
NsbI	TGCGCA	1 cut(s)	160
NspV	TTCGAA	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PctI	GAATGC	1 cut(s)	172
PdiI	GCCGGC	1 cut(s)	247
PfeI	GAWTC	2 cut(s)	122, 406
PflMI	CCANNNNNTGG	1 cut(s)	370
PkrI	GCNGC	3 cut(s)	28, 322, 348
Ppu21I	YACGTR	1 cut(s)	235
PpuMI	RGGWCCY	1 cut(s)	253
Psp5II	RGGWCCY	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	4 cut(s)	115, 253, 460, 480
PspPPI	RGGWCCY	1 cut(s)	253
PstI	CTGCAG	1 cut(s)	75
RsaI	GTAC	2 cut(s)	221, 300
RsaNI	GTAC	2 cut(s)	220, 299
SalI	GTCGAC	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	3 cut(s)	27, 321, 347
Sau3AI	GATC	3 cut(s)	132, 307, 381
Sau96I	GGNCC	4 cut(s)	115, 253, 460, 480
ScaI	AGTACT	1 cut(s)	221
SetI	ASST	9 cut(s)	47, 111, 196, 213, 237, 258, 288, 300, 462
SfcI	CTRYAG	1 cut(s)	71
SfuI	TTCGAA	1 cut(s)	409
SgrAI	CRCCGGYG	1 cut(s)	245
SinI	GGWCC	2 cut(s)	253, 460
SsiI	CCGC	2 cut(s)	320, 374
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	1 cut(s)	203
StyI	CCWWGG	2 cut(s)	207, 483
TaaI	ACNGT	1 cut(s)	303
TaiI	ACGT	4 cut(s)	47, 237, 288, 300
TaqI	TCGA	4 cut(s)	8, 216, 288, 409
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	2 cut(s)	122, 406
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TseI	GCWGC	2 cut(s)	26, 346
Van91I	CCANNNNNTGG	1 cut(s)	370
VpaK11BI	GGWCC	2 cut(s)	253, 460
XmiI	GTMKAC	1 cut(s)	288
XspI	CTAG	1 cut(s)	203
ZrmI	AGTACT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.