FvH4_5g34420

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000457
Physical Location & Seq
Forward (+)
25095316 .. 25095729
414 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g34420.t1

Sequence Viewer

Length: 363 bp
ATGGTGGAGGACGAATGTGCCGACAACGCCATTCCTTTACCTAATGTCACCAGTAAAACCCTCTCTAAGGTGCTTGAGTATTGCAAGAAGCACGCAGAGGATTCCGGCGAGGGCGGCGAGGAGGCTCTTGAGGCATGGGACGCAGATTTCGTCAAATTCGACACGGACACACTCTATGATGTCATCATGGCAGCCAACTATTTGAACATCAAGAGCTTGCTGGACCTGACCTGCCAGAGAGTCGCGGACATGATCAAGGGAAAGACTCCTGAAGAGATTCGGAAGACTTTCAACATCAAGAACGACTTCAGTCCTGAAGAAGAAGAGGAGGTTCGGAGGGAGAACCAACGGGCCTTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

121

Amino Acids

13.71

Weight (kDa)

4.47

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 1 - 32 3e-12 Skp1 family, tetramerisation domain
Skp1 PF01466 71 - 118 2.7e-29 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 239
AccII CGCG 1 cut(s) 245
AciI CCGC 2 cut(s) 114, 245
AcsI RAATTY 1 cut(s) 155
AcuI CTGAAG 3 cut(s) 291, 292, 336
AfiI CCNNNNNNNGG 1 cut(s) 67
AgsI TTSAA 2 cut(s) 205, 292
AluBI AGCT 1 cut(s) 216
AluI AGCT 1 cut(s) 216
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 155
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
Asp700I GAANNNNTTC 3 cut(s) 276, 287, 305
AspS9I GGNCC 2 cut(s) 223, 351
AsuHPI GGTGA 1 cut(s) 40
AvaII GGWCC 1 cut(s) 223
BbsI GAAGAC 1 cut(s) 290
BbvI GCAGC 1 cut(s) 203
BclI TGATCA 1 cut(s) 252
BfuAI ACCTGC 1 cut(s) 239
BisI GCNGC 2 cut(s) 115, 192
BlsI GCNGC 2 cut(s) 116, 193
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 223, 351
BoxI GACNNNNGTC 1 cut(s) 309
BpiI GAAGAC 1 cut(s) 290
BpuEI CTTGAG 2 cut(s) 95, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 51
BseRI GAGGAG 2 cut(s) 134, 341
BseXI GCAGC 1 cut(s) 203
Bsh1236I CGCG 1 cut(s) 245
BshFI GGCC 1 cut(s) 353
BsiSI CCGG 1 cut(s) 105
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 1 cut(s) 353
Bsp143I GATC 1 cut(s) 252
BspACI CCGC 2 cut(s) 114, 245
BspANI GGCC 1 cut(s) 353
BspFNI CGCG 1 cut(s) 245
BspMI ACCTGC 1 cut(s) 239
BsrI ACTGG 1 cut(s) 51
BssMI GATC 1 cut(s) 252
Bst6I CTCTTC 2 cut(s) 267, 318
BstC8I GCNNGC 2 cut(s) 93, 218
BstDEI CTNAG 1 cut(s) 66
BstENI CCTNNNNNAGG 1 cut(s) 65
BstFNI CGCG 1 cut(s) 245
BstKTI GATC 1 cut(s) 255
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 4 cut(s) 26, 114, 131, 140
BstPAI GACNNNNGTC 1 cut(s) 309
BstUI CGCG 1 cut(s) 245
BstV1I GCAGC 1 cut(s) 203
BstV2I GAAGAC 1 cut(s) 290
BsuRI GGCC 1 cut(s) 353
BveI ACCTGC 1 cut(s) 239
Cac8I GCNNGC 2 cut(s) 93, 218
Cfr13I GGNCC 2 cut(s) 223, 351
CseI GACGC 1 cut(s) 149
CviAII CATG 3 cut(s) 135, 187, 250
CviJI RGCY 4 cut(s) 125, 194, 216, 353
CviKI_1 RGCY 4 cut(s) 125, 194, 216, 353
DdeI CTNAG 1 cut(s) 66
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
Eam1104I CTCTTC 2 cut(s) 267, 318
EarI CTCTTC 2 cut(s) 267, 318
Eco47I GGWCC 1 cut(s) 223
Eco57I CTGAAG 3 cut(s) 291, 292, 336
EcoNI CCTNNNNNAGG 1 cut(s) 65
FaeI CATG 3 cut(s) 138, 190, 253
FaiI YATR 4 cut(s) 136, 177, 188, 251
FalI AAGNNNNNCTT 2 cut(s) 290, 322
FaqI GGGAC 1 cut(s) 152
FatI CATG 3 cut(s) 134, 186, 249
FbaI TGATCA 1 cut(s) 252
Fnu4HI GCNGC 2 cut(s) 115, 192
Fsp4HI GCNGC 2 cut(s) 115, 192
GluI GCNGC 2 cut(s) 115, 192
HaeIII GGCC 1 cut(s) 353
HapII CCGG 1 cut(s) 105
HgaI GACGC 1 cut(s) 149
Hin1II CATG 3 cut(s) 138, 190, 253
HinfI GANTC 4 cut(s) 101, 240, 265, 277
HpaII CCGG 1 cut(s) 105
HphI GGTGA 1 cut(s) 40
Hpy188I TCNGA 2 cut(s) 282, 336
Hpy188III TCNNGA 5 cut(s) 128, 211, 269, 298, 314
HpyCH4V TGCA 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 114, 131, 140
HpyF3I CTNAG 1 cut(s) 66
Hsp92II CATG 3 cut(s) 138, 190, 253
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 1 cut(s) 252
LpnPI CCDG 8 cut(s) 64, 118, 206, 239, 244, 248, 282, 327
Lsp1109I GCAGC 1 cut(s) 203
MaeIII GTNAC 1 cut(s) 46
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MboII GAAGA 5 cut(s) 284, 295, 329, 332, 335
MluCI AATT 1 cut(s) 155
MlyI GAGTC 2 cut(s) 249, 259
MnlI CCTC 9 cut(s) 71, 91, 103, 112, 115, 124, 319, 322, 330
MroXI GAANNNNTTC 3 cut(s) 276, 287, 305
MspI CCGG 1 cut(s) 105
MvnI CGCG 1 cut(s) 245
MwoI GCNNNNNNNGC 4 cut(s) 26, 114, 131, 140
NdeII GATC 1 cut(s) 252
NlaIII CATG 3 cut(s) 138, 190, 253
NmuCI GTSAC 1 cut(s) 46
PcsI WCGNNNNNNNCGW 3 cut(s) 18, 147, 156
PdmI GAANNNNTTC 3 cut(s) 276, 287, 305
PfeI GAWTC 2 cut(s) 101, 277
PkrI GCNGC 2 cut(s) 116, 193
PleI GAGTC 2 cut(s) 248, 259
PpsI GAGTC 2 cut(s) 248, 259
PshAI GACNNNNGTC 1 cut(s) 309
PspPI GGNCC 2 cut(s) 223, 351
SatI GCNGC 2 cut(s) 115, 192
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 2 cut(s) 223, 351
SchI GAGTC 2 cut(s) 249, 259
SetI ASST 6 cut(s) 43, 72, 218, 228, 233, 333
SinI GGWCC 1 cut(s) 223
SmlI CTYRAG 2 cut(s) 74, 128
SmoI CTYRAG 2 cut(s) 74, 128
Sse9I AATT 1 cut(s) 155
SsiI CCGC 2 cut(s) 114, 245
TaqI TCGA 1 cut(s) 159
TasI AATT 1 cut(s) 155
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 2 cut(s) 101, 277
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 46
TspGWI ACGGA 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 223
XagI CCTNNNNNAGG 1 cut(s) 65
XapI RAATTY 1 cut(s) 155
XmnI GAANNNNTTC 3 cut(s) 276, 287, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.