Rh6CG016300

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000457
Physical Location & Seq
Forward (+)
1739099 .. 1739515
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG016300.1

Sequence Viewer

Length: 417 bp
ATGGGGTCGACTGAAATTGAGAACAAGAAGCTTATAACCCTGAAGAGCTCCGACGGAGAGGAATTCGAGGTTGATGAGGCTGTGGCTCTTCAATCTCAGACCATGAAGCACATGATGGAGGATGGCTGCGCCGATAATACCATCCCATTGACCGGCGTCATCCTTGCCAAAGTCATCGAGTACTTGAAGAAGCACGCTGAGGATAAGGAAGGCAAGGATCAGAAGAAGTCTGTCAAGAAGTTCGACGCCGATTTCGTCAAGCAGTCCGTCCTGTTTGATCTGATATTGGCAGCAAAGTGTCTGGAAATCAAGAAGCTGTGGGACTTGACATGCCAGACTCTGGCGGACATGATCAAAGATCCTGAGATGTCTCCTGAGATGATTCGTGAGATTTTCAACCTCAAGAATGACTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

138

Amino Acids

15.63

Weight (kDa)

4.92

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 10 - 66 1.3e-21 Skp1 family, tetramerisation domain
Skp1 PF01466 104 - 137 1.1e-10 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 35
AccB7I CCANNNNNTGG 1 cut(s) 340
AccI GTMKAC 1 cut(s) 8
AciI CCGC 1 cut(s) 344
AclWI GGATC 2 cut(s) 225, 353
AcsI RAATTY 1 cut(s) 62
AcuI CTGAAG 1 cut(s) 62
AcyI GRCGYC 2 cut(s) 156, 246
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 2 cut(s) 152, 340
AgsI TTSAA 3 cut(s) 92, 187, 397
AluBI AGCT 3 cut(s) 31, 48, 316
AluI AGCT 3 cut(s) 31, 48, 316
Alw21I GWGCWC 1 cut(s) 50
Alw26I GTCTC 1 cut(s) 375
AlwI GGATC 2 cut(s) 225, 353
AlwNI CAGNNNCTG 1 cut(s) 340
ApeKI GCWGC 2 cut(s) 126, 290
ApoI RAATTY 1 cut(s) 62
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
AspLEI GCGC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 50
BbvCI CCTCAGC 1 cut(s) 198
BbvI GCAGC 2 cut(s) 113, 302
BccI CCATC 3 cut(s) 109, 116, 149
BclI TGATCA 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 375
BisI GCNGC 2 cut(s) 127, 291
BlsI GCNGC 2 cut(s) 128, 292
BmcAI AGTACT 1 cut(s) 182
BoxI GACNNNNGTC 1 cut(s) 155
Bpu10I CCTNAGC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 386
BsaHI GRCGYC 2 cut(s) 156, 246
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 340
Bse118I RCCGGY 1 cut(s) 152
BseGI GGATG 3 cut(s) 127, 141, 159
BseLI CCNNNNNNNGG 2 cut(s) 152, 340
BseMII CTCAG 4 cut(s) 110, 189, 354, 366
BseXI GCAGC 2 cut(s) 113, 302
BsiHKAI GWGCWC 1 cut(s) 50
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 2 cut(s) 152, 340
BsmAI GTCTC 1 cut(s) 375
BsmFI GGGAC 1 cut(s) 335
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 4 cut(s) 217, 277, 351, 358
BspACI CCGC 1 cut(s) 344
BspCNI CTCAG 4 cut(s) 109, 190, 355, 367
BspPI GGATC 2 cut(s) 225, 353
BspQI GCTCTTC 2 cut(s) 38, 93
BsrFI RCCGGY 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 152
BssMI GATC 4 cut(s) 217, 277, 351, 358
BssNI GRCGYC 2 cut(s) 156, 246
Bst6I CTCTTC 2 cut(s) 38, 93
BstACI GRCGYC 2 cut(s) 156, 246
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 4 cut(s) 96, 198, 363, 375
BstF5I GGATG 3 cut(s) 127, 141, 159
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 4 cut(s) 220, 280, 354, 361
BstMAI GTCTC 1 cut(s) 375
BstMBI GATC 4 cut(s) 217, 277, 351, 358
BstNSI RCATGY 1 cut(s) 333
BstPAI GACNNNNGTC 1 cut(s) 155
BstV1I GCAGC 2 cut(s) 113, 302
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BtsCI GGATG 3 cut(s) 127, 141, 159
Cac8I GCNNGC 1 cut(s) 195
CaiI CAGNNNCTG 1 cut(s) 340
CfoI GCGC 1 cut(s) 131
Cfr10I RCCGGY 1 cut(s) 152
CseI GACGC 2 cut(s) 145, 254
Csp6I GTAC 1 cut(s) 181
CviAII CATG 4 cut(s) 103, 112, 330, 349
CviJI RGCY 6 cut(s) 31, 48, 80, 86, 126, 316
CviKI_1 RGCY 6 cut(s) 31, 48, 80, 86, 126, 316
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 4 cut(s) 96, 198, 363, 375
DpnI GATC 4 cut(s) 219, 279, 353, 360
DpnII GATC 4 cut(s) 217, 277, 351, 358
Eam1104I CTCTTC 2 cut(s) 38, 93
EarI CTCTTC 2 cut(s) 38, 93
EciI GGCGGA 1 cut(s) 359
Ecl136II GAGCTC 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 50
Eco53kI GAGCTC 1 cut(s) 48
Eco57I CTGAAG 1 cut(s) 62
EcoICRI GAGCTC 1 cut(s) 48
EcoRI GAATTC 1 cut(s) 62
EcoT38I GRGCYC 1 cut(s) 50
FaeI CATG 4 cut(s) 106, 115, 333, 352
FaiI YATR 5 cut(s) 35, 104, 113, 331, 350
FaqI GGGAC 1 cut(s) 335
FatI CATG 4 cut(s) 102, 111, 329, 348
FbaI TGATCA 1 cut(s) 351
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 2 cut(s) 127, 291
FokI GGATG 3 cut(s) 128, 134, 146
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 2 cut(s) 127, 291
GlaI GCGC 1 cut(s) 130
GluI GCNGC 2 cut(s) 127, 291
HapII CCGG 1 cut(s) 153
HgaI GACGC 2 cut(s) 145, 254
HhaI GCGC 1 cut(s) 131
Hin1I GRCGYC 2 cut(s) 156, 246
Hin1II CATG 4 cut(s) 106, 115, 333, 352
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 3 cut(s) 337, 382, 410
HpaII CCGG 1 cut(s) 153
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 4 cut(s) 52, 99, 222, 282
Hpy188III TCNNGA 8 cut(s) 235, 302, 310, 362, 374, 386, 403, 414
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 2 cut(s) 56, 248
HpyAV CCTTC 1 cut(s) 203
HpyF3I CTNAG 4 cut(s) 96, 198, 363, 375
Hsp92I GRCGYC 2 cut(s) 156, 246
Hsp92II CATG 4 cut(s) 106, 115, 333, 352
HspAI GCGC 1 cut(s) 129
Ksp22I TGATCA 1 cut(s) 351
Kzo9I GATC 4 cut(s) 217, 277, 351, 358
LguI GCTCTTC 2 cut(s) 38, 93
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 8 cut(s) 53, 166, 284, 287, 326, 347, 375, 387
Lsp1109I GCAGC 2 cut(s) 113, 302
MalI GATC 4 cut(s) 219, 279, 353, 360
MboI GATC 4 cut(s) 217, 277, 351, 358
MboII GAAGA 4 cut(s) 55, 80, 199, 235
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 2 cut(s) 15, 62
MlyI GAGTC 2 cut(s) 331, 404
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 6 cut(s) 52, 61, 70, 112, 193, 410
MspI CCGG 1 cut(s) 153
NdeII GATC 4 cut(s) 217, 277, 351, 358
NlaIII CATG 4 cut(s) 106, 115, 333, 352
NspI RCATGY 1 cut(s) 333
PciSI GCTCTTC 2 cut(s) 38, 93
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PfeI GAWTC 1 cut(s) 382
PflMI CCANNNNNTGG 1 cut(s) 340
PkrI GCNGC 2 cut(s) 128, 292
PleI GAGTC 2 cut(s) 331, 404
PpsI GAGTC 2 cut(s) 331, 404
PshAI GACNNNNGTC 1 cut(s) 155
PsiI TTATAA 1 cut(s) 35
Psp124BI GAGCTC 1 cut(s) 50
PstNI CAGNNNCTG 1 cut(s) 340
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SacI GAGCTC 1 cut(s) 50
SalI GTCGAC 1 cut(s) 7
SapI GCTCTTC 2 cut(s) 38, 93
SatI GCNGC 2 cut(s) 127, 291
Sau3AI GATC 4 cut(s) 217, 277, 351, 358
ScaI AGTACT 1 cut(s) 182
SchI GAGTC 2 cut(s) 331, 404
SduI GDGCHC 1 cut(s) 50
SetI ASST 5 cut(s) 33, 50, 72, 318, 402
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 2 cut(s) 15, 62
SsiI CCGC 1 cut(s) 344
SstI GAGCTC 1 cut(s) 50
TaqI TCGA 4 cut(s) 8, 66, 177, 243
TasI AATT 2 cut(s) 15, 62
TatI WGTACW 1 cut(s) 180
TfiI GAWTC 1 cut(s) 382
TseI GCWGC 2 cut(s) 126, 290
TspDTI ATGAA 1 cut(s) 119
TspGWI ACGGA 2 cut(s) 69, 256
Van91I CCANNNNNTGG 1 cut(s) 340
XapI RAATTY 1 cut(s) 62
XceI RCATGY 1 cut(s) 333
XmiI GTMKAC 1 cut(s) 8
ZrmI AGTACT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.