RLG00000012559

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000457
Physical Location & Seq
Forward (+)
19843045 .. 19843497
453 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012559

Sequence Viewer

Length: 453 bp
ATGTCGACTGAAAAGAAGATGATAGTCCTGCAGAGCTCGGACGATGAGACTTTCCAGCTTGAAGAGGCGGTGGCCCTCCAATCCCAGACGATCAAGCACATGGTGGAGGACGACTGTGCCAACAACACCATTCCTTTACCTAATGTCACCGGAGCTACCCTCACGAAGGTGCTCGAGTATTGCCAGAAGCACGTGGAGGAGGGCGGCGAGGAGGCTCTCAGGGCATGGGACGCAGATTTTGTCGACTTCGACACGGACACCCTCTTTGACGTCATCATGGCAGCTAACTATTTGAACATTAAGGGCTTGCTGGAGCTGACCGCCCAGAAAACCGCGGACTTGATCAAGGGAAAGACTCCTGAAAAGATTCGTGAGACTTTCAAAATCAAGAACGACTTCCTTCCTGGGGAAGAAGAAGAGATTCGGATGAAGAACTCATGGGCTTTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

151

Amino Acids

17.02

Weight (kDa)

4.51

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 6 - 65 1.5e-27 Skp1 family, tetramerisation domain
Skp1 PF01466 101 - 148 4.1e-22 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 273
AccI GTMKAC 2 cut(s) 5, 243
AccII CGCG 1 cut(s) 335
AciI CCGC 5 cut(s) 68, 204, 321, 333, 335
AcvI CACGTG 1 cut(s) 193
AcyI GRCGYC 1 cut(s) 270
AdeI CACNNNGTG 1 cut(s) 103
AfiI CCNNNNNNNGG 2 cut(s) 166, 406
AgsI TTSAA 3 cut(s) 62, 295, 382
AjnI CCWGG 1 cut(s) 403
AleI CACNNNNGTG 1 cut(s) 167
AluBI AGCT 5 cut(s) 36, 58, 155, 284, 316
AluI AGCT 5 cut(s) 36, 58, 155, 284, 316
Alw21I GWGCWC 2 cut(s) 38, 174
Alw26I GTCTC 2 cut(s) 41, 368
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 281
ArsI GACNNNNNNTTYG 4 cut(s) 221, 248, 253, 280
Asp700I GAANNNNTTC 3 cut(s) 366, 395, 420
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 139
AvaI CYCGRG 1 cut(s) 173
BanII GRGCYC 1 cut(s) 38
BbrPI CACGTG 1 cut(s) 193
Bbv12I GWGCWC 2 cut(s) 38, 174
BbvI GCAGC 1 cut(s) 293
BciT130I CCWGG 1 cut(s) 405
BclI TGATCA 1 cut(s) 342
BcoDI GTCTC 2 cut(s) 41, 368
BfmI CTRYAG 1 cut(s) 29
BisI GCNGC 2 cut(s) 205, 282
BlsI GCNGC 2 cut(s) 206, 283
Bme1390I CCNGG 1 cut(s) 405
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 73
BmrFI CCNGG 1 cut(s) 405
BplI GAGNNNNNCTC 2 cut(s) 144, 176
BpmI CTGGAG 1 cut(s) 332
BsaAI YACGTR 1 cut(s) 193
BsaHI GRCGYC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 333, 404
BsaWI WCCGGW 1 cut(s) 149
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 406
BseBI CCWGG 1 cut(s) 405
BseDI CCNNGG 2 cut(s) 333, 404
BseGI GGATG 1 cut(s) 432
BseLI CCNNNNNNNGG 2 cut(s) 166, 406
BseMII CTCAG 1 cut(s) 232
BseRI GAGGAG 2 cut(s) 212, 224
BseXI GCAGC 1 cut(s) 293
Bsh1236I CGCG 1 cut(s) 335
BshFI GGCC 1 cut(s) 74
BsiHKAI GWGCWC 2 cut(s) 38, 174
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 1 cut(s) 150
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 2 cut(s) 166, 406
BsmAI GTCTC 2 cut(s) 41, 368
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 173
Bsp1286I GDGCHC 2 cut(s) 38, 174
Bsp143I GATC 2 cut(s) 90, 342
BspACI CCGC 5 cut(s) 68, 204, 321, 333, 335
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 1 cut(s) 231
BspFNI CGCG 1 cut(s) 335
BspMAI CTGCAG 1 cut(s) 33
BssECI CCNNGG 2 cut(s) 333, 404
BssMI GATC 2 cut(s) 90, 342
BssNI GRCGYC 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 1 cut(s) 116
Bst6I CTCTTC 2 cut(s) 57, 411
BstACI GRCGYC 1 cut(s) 270
BstBAI YACGTR 1 cut(s) 193
BstC8I GCNNGC 1 cut(s) 308
BstDEI CTNAG 1 cut(s) 218
BstDSI CCRYGG 1 cut(s) 333
BstENI CCTNNNNNAGG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 432
BstFNI CGCG 1 cut(s) 335
BstKTI GATC 2 cut(s) 93, 345
BstMAI GTCTC 2 cut(s) 41, 368
BstMBI GATC 2 cut(s) 90, 342
BstMWI GCNNNNNNNGC 2 cut(s) 221, 230
BstNI CCWGG 1 cut(s) 405
BstSCI CCNGG 1 cut(s) 403
BstSFI CTRYAG 1 cut(s) 29
BstUI CGCG 1 cut(s) 335
BstV1I GCAGC 1 cut(s) 293
BsuRI GGCC 1 cut(s) 74
BtgI CCRYGG 1 cut(s) 333
BtsCI GGATG 1 cut(s) 432
Cac8I GCNNGC 1 cut(s) 308
Cfr13I GGNCC 1 cut(s) 73
Cfr42I CCGCGG 1 cut(s) 336
CseI GACGC 1 cut(s) 239
CviAII CATG 4 cut(s) 100, 225, 277, 438
CviJI RGCY 9 cut(s) 36, 58, 74, 155, 215, 284, 306, 316, 443
CviKI_1 RGCY 9 cut(s) 36, 58, 74, 155, 215, 284, 306, 316, 443
DdeI CTNAG 1 cut(s) 218
DpnI GATC 2 cut(s) 92, 344
DpnII GATC 2 cut(s) 90, 342
DraIII CACNNNGTG 1 cut(s) 103
Eam1104I CTCTTC 2 cut(s) 57, 411
EarI CTCTTC 2 cut(s) 57, 411
Ecl136II GAGCTC 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 36
Eco72I CACGTG 1 cut(s) 193
Eco88I CYCGRG 1 cut(s) 173
EcoICRI GAGCTC 1 cut(s) 36
EcoNI CCTNNNNNAGG 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 403
EcoT38I GRGCYC 1 cut(s) 38
FaeI CATG 4 cut(s) 103, 228, 280, 441
FaiI YATR 4 cut(s) 101, 226, 278, 439
FalI AAGNNNNNCTT 2 cut(s) 380, 412
FaqI GGGAC 1 cut(s) 242
FatI CATG 4 cut(s) 99, 224, 276, 437
FbaI TGATCA 1 cut(s) 342
FblI GTMKAC 2 cut(s) 5, 243
Fnu4HI GCNGC 2 cut(s) 205, 282
FokI GGATG 1 cut(s) 439
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 2 cut(s) 205, 282
GluI GCNGC 2 cut(s) 205, 282
GsuI CTGGAG 1 cut(s) 332
HaeIII GGCC 1 cut(s) 74
HapII CCGG 1 cut(s) 150
HgaI GACGC 1 cut(s) 239
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 4 cut(s) 103, 228, 280, 441
HincII GTYRAC 2 cut(s) 6, 244
HindII GTYRAC 2 cut(s) 6, 244
HinfI GANTC 3 cut(s) 355, 367, 421
HpaII CCGG 1 cut(s) 150
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 2 cut(s) 6, 244
Hpy188I TCNGA 2 cut(s) 40, 426
Hpy188III TCNNGA 4 cut(s) 163, 359, 371, 388
Hpy8I GTNNAC 2 cut(s) 6, 244
HpyAV CCTTC 2 cut(s) 160, 410
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 2 cut(s) 192, 270
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 230
HpyF3I CTNAG 1 cut(s) 218
HpySE526I ACGT 2 cut(s) 192, 270
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 4 cut(s) 103, 228, 280, 441
Ksp22I TGATCA 1 cut(s) 342
KspI CCGCGG 1 cut(s) 336
Kzo9I GATC 2 cut(s) 90, 342
LmnI GCTCC 2 cut(s) 152, 313
Lsp1109I GCAGC 1 cut(s) 293
MaeII ACGT 2 cut(s) 192, 270
MaeIII GTNAC 1 cut(s) 145
MalI GATC 2 cut(s) 92, 344
MboI GATC 2 cut(s) 90, 342
MboII GAAGA 6 cut(s) 28, 74, 422, 425, 428, 442
MhlI GDGCHC 2 cut(s) 38, 174
MlyI GAGTC 1 cut(s) 349
MnlI CCTC 9 cut(s) 58, 86, 100, 170, 190, 193, 202, 205, 272
MroXI GAANNNNTTC 3 cut(s) 366, 395, 420
MseI TTAA 1 cut(s) 300
MslI CAYNNNNRTG 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 335
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 405
MvaI CCWGG 1 cut(s) 405
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 2 cut(s) 221, 230
NdeII GATC 2 cut(s) 90, 342
NlaIII CATG 4 cut(s) 103, 228, 280, 441
NmuCI GTSAC 1 cut(s) 145
OliI CACNNNNGTG 1 cut(s) 167
PaeR7I CTCGAG 1 cut(s) 173
PdmI GAANNNNTTC 3 cut(s) 366, 395, 420
PfeI GAWTC 2 cut(s) 367, 421
PkrI GCNGC 2 cut(s) 206, 283
PleI GAGTC 1 cut(s) 349
PmaCI CACGTG 1 cut(s) 193
PmlI CACGTG 1 cut(s) 193
PpsI GAGTC 1 cut(s) 349
Ppu21I YACGTR 1 cut(s) 193
Psp124BI GAGCTC 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 403
PspCI CACGTG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 403
PspPI GGNCC 1 cut(s) 73
PspXI VCTCGAGB 1 cut(s) 173
PstI CTGCAG 1 cut(s) 33
RseI CAYNNNNRTG 1 cut(s) 167
SacI GAGCTC 1 cut(s) 38
SacII CCGCGG 1 cut(s) 336
SalI GTCGAC 2 cut(s) 4, 242
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 2 cut(s) 205, 282
Sau3AI GATC 2 cut(s) 90, 342
Sau96I GGNCC 1 cut(s) 73
SchI GAGTC 1 cut(s) 349
ScrFI CCNGG 1 cut(s) 405
SduI GDGCHC 2 cut(s) 38, 174
SetI ASST 9 cut(s) 38, 60, 142, 157, 171, 195, 273, 286, 318
SfcI CTRYAG 1 cut(s) 29
Sfr274I CTCGAG 1 cut(s) 173
Sfr303I CCGCGG 1 cut(s) 336
SgrBI CCGCGG 1 cut(s) 336
SlaI CTCGAG 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
SsiI CCGC 5 cut(s) 68, 204, 321, 333, 335
SstI GAGCTC 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 403
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 2 cut(s) 195, 273
TaqI TCGA 4 cut(s) 5, 174, 243, 249
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 2 cut(s) 367, 421
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 1 cut(s) 443
TspGWI ACGGA 1 cut(s) 269
XagI CCTNNNNNAGG 1 cut(s) 164
XhoI CTCGAG 1 cut(s) 173
XmiI GTMKAC 2 cut(s) 5, 243
XmnI GAANNNNTTC 3 cut(s) 366, 395, 420
ZraI GACGTC 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.