MD10G1067100.v1.1

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000457
Physical Location & Seq
Forward (+)
9220604 .. 9221089
486 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1067100.v1.1.491

Sequence Viewer

Length: 486 bp
ATGGCCTCATCATCATCAGCGGACTTGAAGAAGAAGATAAACCTAAAGAGCTCCGATGACGAGATGTTCGAGGTGGAAGAGGCGGTGGCCATGAAGTCGCAGACCATCAAGCACATGGTGGAGGACGGATGCGCCGGGAATGCCATTCCTTTGCCAAATGTGACGAGCGCCATCCTTGCGAAGGTCATCGAGTACTGCAGGAAGCATAGTGAAGATGAGGGGGCTACTGCTGCTGACAGCGAGAAAAATGTCAAGGAGTGGGACGCCGAGTTCATGAAGATCGACCAGAACATTCTCTATGACCTAATAATGGCGGCAAACTATCTCGACATCAAGGGCCTGCTTGACCTGACGTGTCAGACTGTGGCGAACATGATCAAGGGGAAGACACCTGAACAGATTCGCACGACCTTCAACATCACGAACGATTTCACTCCAGAGGAAGAAGAAAAGATTCGTAGGGAGAACCAGTGGGCTTTCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

162

Amino Acids

18.14

Weight (kDa)

4.71

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 11 - 70 6.2e-29 Skp1 family, tetramerisation domain
Skp1 PF01466 112 - 159 5.9e-31 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 20, 83, 314
AcoI YGGCCR 1 cut(s) 87
AcyI GRCGYC 1 cut(s) 264
AdeI CACNNNGTG 1 cut(s) 118
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 181, 310
AflIII ACRYGT 1 cut(s) 353
AgsI TTSAA 2 cut(s) 28, 415
AjiI CACGTC 1 cut(s) 354
AloI GAACNNNNNNTCC 2 cut(s) 254, 286
AluBI AGCT 1 cut(s) 51
AluI AGCT 1 cut(s) 51
Alw21I GWGCWC 1 cut(s) 53
AoxI GGCC 3 cut(s) 3, 87, 337
ApeKI GCWGC 1 cut(s) 230
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
Asp700I GAANNNNTTC 3 cut(s) 399, 428, 453
AspLEI GCGC 2 cut(s) 134, 170
AspS9I GGNCC 1 cut(s) 337
AsuC2I CCSGG 1 cut(s) 136
BalI TGGCCA 1 cut(s) 89
BanII GRGCYC 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 217
BccI CCATC 2 cut(s) 113, 179
BclI TGATCA 1 cut(s) 375
BcnI CCSGG 1 cut(s) 136
BfmI CTRYAG 1 cut(s) 196
BfoI RGCGCY 1 cut(s) 171
BisI GCNGC 2 cut(s) 231, 315
BlsI GCNGC 2 cut(s) 232, 316
BmcAI AGTACT 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 136
BmgBI CACGTC 1 cut(s) 354
BmgT120I GGNCC 1 cut(s) 337
BmrFI CCNGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 392
BpmI CTGGAG 1 cut(s) 420
BpuMI CCSGG 1 cut(s) 136
BsaHI GRCGYC 1 cut(s) 264
BsaXI ACNNNNNCTCC 2 cut(s) 455, 485
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 310
Bse1I ACTGG 1 cut(s) 469
BseGI GGATG 2 cut(s) 134, 171
BseLI CCNNNNNNNGG 2 cut(s) 181, 310
BseNI ACTGG 1 cut(s) 469
BseXI GCAGC 1 cut(s) 217
BshFI GGCC 3 cut(s) 5, 89, 339
BsiHKAI GWGCWC 1 cut(s) 53
BsiSI CCGG 1 cut(s) 135
BslFI GGGAC 1 cut(s) 275
BslI CCNNNNNNNGG 2 cut(s) 181, 310
BsmFI GGGAC 1 cut(s) 275
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 3 cut(s) 5, 89, 339
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 2 cut(s) 279, 375
BspACI CCGC 3 cut(s) 20, 83, 314
BspANI GGCC 3 cut(s) 5, 89, 339
BspHI TCATGA 1 cut(s) 273
BspMAI CTGCAG 1 cut(s) 200
BsrI ACTGG 1 cut(s) 469
BssMI GATC 2 cut(s) 279, 375
BssNI GRCGYC 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 364
Bst6I CTCTTC 1 cut(s) 72
BstACI GRCGYC 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 341
BstENI CCTNNNNNAGG 1 cut(s) 179
BstF5I GGATG 2 cut(s) 134, 171
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 2 cut(s) 134, 170
BstKTI GATC 2 cut(s) 282, 378
BstMBI GATC 2 cut(s) 279, 375
BstMWI GCNNNNNNNGC 3 cut(s) 140, 176, 230
BstSCI CCNGG 1 cut(s) 134
BstSFI CTRYAG 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 392
BsuRI GGCC 3 cut(s) 5, 89, 339
BtrI CACGTC 1 cut(s) 354
BtsCI GGATG 2 cut(s) 134, 171
BtsIMutI CAGTG 1 cut(s) 476
Cac8I GCNNGC 1 cut(s) 341
CciI TCATGA 1 cut(s) 273
CfoI GCGC 2 cut(s) 134, 170
Cfr13I GGNCC 1 cut(s) 337
CseI GACGC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 193
CviAII CATG 4 cut(s) 91, 115, 274, 373
CviJI RGCY 6 cut(s) 5, 51, 89, 224, 339, 476
CviKI_1 RGCY 6 cut(s) 5, 51, 89, 224, 339, 476
CviQI GTAC 1 cut(s) 193
DpnI GATC 2 cut(s) 281, 377
DpnII GATC 2 cut(s) 279, 375
DraIII CACNNNGTG 1 cut(s) 118
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Ecl136II GAGCTC 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 53
Eco53kI GAGCTC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 51
EcoNI CCTNNNNNAGG 1 cut(s) 179
EcoO109I RGGNCCY 1 cut(s) 337
EcoT38I GRGCYC 1 cut(s) 53
FaeI CATG 4 cut(s) 94, 118, 277, 376
FaiI YATR 6 cut(s) 92, 116, 207, 275, 300, 374
FaqI GGGAC 1 cut(s) 275
FatI CATG 4 cut(s) 90, 114, 273, 372
FbaI TGATCA 1 cut(s) 375
Fnu4HI GCNGC 2 cut(s) 231, 315
FokI GGATG 2 cut(s) 141, 158
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 2 cut(s) 231, 315
GlaI GCGC 2 cut(s) 133, 169
GluI GCNGC 2 cut(s) 231, 315
GsuI CTGGAG 1 cut(s) 420
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 3 cut(s) 5, 89, 339
HapII CCGG 1 cut(s) 135
HgaI GACGC 1 cut(s) 272
HhaI GCGC 2 cut(s) 134, 170
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 4 cut(s) 94, 118, 277, 376
Hin6I GCGC 2 cut(s) 132, 168
HinP1I GCGC 2 cut(s) 132, 168
HinfI GANTC 2 cut(s) 400, 454
HpaII CCGG 1 cut(s) 135
Hpy188I TCNGA 2 cut(s) 55, 360
Hpy188III TCNNGA 4 cut(s) 274, 326, 421, 437
HpyAV CCTTC 2 cut(s) 175, 421
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4IV ACGT 1 cut(s) 353
HpyCH4V TGCA 1 cut(s) 198
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 176, 230
HpySE526I ACGT 1 cut(s) 353
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 4 cut(s) 94, 118, 277, 376
HspAI GCGC 2 cut(s) 132, 168
Ksp22I TGATCA 1 cut(s) 375
Kzo9I GATC 2 cut(s) 279, 375
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 8 cut(s) 148, 184, 299, 353, 362, 405, 450, 482
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 1 cut(s) 119
MaeII ACGT 1 cut(s) 353
MaeIII GTNAC 1 cut(s) 160
MalI GATC 2 cut(s) 281, 377
MboI GATC 2 cut(s) 279, 375
MboII GAAGA 9 cut(s) 40, 43, 46, 89, 224, 289, 397, 455, 458
MhlI GDGCHC 1 cut(s) 53
MlsI TGGCCA 1 cut(s) 89
MluNI TGGCCA 1 cut(s) 89
MnlI CCTC 6 cut(s) 16, 64, 73, 115, 211, 433
Mox20I TGGCCA 1 cut(s) 89
MroXI GAANNNNTTC 3 cut(s) 399, 428, 453
MscI TGGCCA 1 cut(s) 89
Msp20I TGGCCA 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 136
Mva1269I GAATGC 1 cut(s) 145
MwoI GCNNNNNNNGC 3 cut(s) 140, 176, 230
NciI CCSGG 1 cut(s) 136
NdeII GATC 2 cut(s) 279, 375
NlaIII CATG 4 cut(s) 94, 118, 277, 376
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 160
PagI TCATGA 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PctI GAATGC 1 cut(s) 145
PdmI GAANNNNTTC 3 cut(s) 399, 428, 453
PfeI GAWTC 2 cut(s) 400, 454
PkrI GCNGC 2 cut(s) 232, 316
Psp124BI GAGCTC 1 cut(s) 53
PspPI GGNCC 1 cut(s) 337
PstI CTGCAG 1 cut(s) 200
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SacI GAGCTC 1 cut(s) 53
SatI GCNGC 2 cut(s) 231, 315
Sau3AI GATC 2 cut(s) 279, 375
Sau96I GGNCC 1 cut(s) 337
ScaI AGTACT 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 136
SduI GDGCHC 1 cut(s) 53
SetI ASST 9 cut(s) 45, 53, 75, 186, 306, 351, 356, 394, 413
SfaNI GCATC 1 cut(s) 119
SfcI CTRYAG 1 cut(s) 196
SsiI CCGC 3 cut(s) 20, 83, 314
SstI GAGCTC 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 364
TaiI ACGT 1 cut(s) 356
TaqI TCGA 5 cut(s) 69, 189, 282, 327, 480
TatI WGTACW 1 cut(s) 192
TauI GCSGC 1 cut(s) 317
TfiI GAWTC 2 cut(s) 400, 454
TscAI CASTG 1 cut(s) 476
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 3 cut(s) 107, 262, 290
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 1 cut(s) 476
XagI CCTNNNNNAGG 1 cut(s) 179
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
XmnI GAANNNNTTC 3 cut(s) 399, 428, 453
ZrmI AGTACT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.