Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000457

Physical Location & Seq

Genomic Coordinates Reverse (-)

35815834 .. 35817769

Gene Structure 1936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1304800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGGAGTCGCACACCATGAAGCAGATGGTGGAAGACGACTACACCAATAATGCGATCCCTCTCCCCAATGTAACCAGCCACATCGTCACCAAAGTCATCGAGTACGGCCAGACAAAGCATGTCAAGCGTCGAGACGGCAATAGCACCGACGTCAGCAAGAGCGACGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000226 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005886 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009524 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010605 GO:0015630 GO:0016020 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045910 GO:0045934 GO:0046686 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

57

Amino Acids

6.36

Weight (kDa)

5.81

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	1 - 40	1.6e-12	Skp1 family, tetramerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca	FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica	MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica	Prupe.8G166100_v2.0.a1
pyrus_communis	pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis	RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata	RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora	Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa	Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha	Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana	Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	153
AclWI	GGATC	1 cut(s)	49
AcoI	YGGCCR	1 cut(s)	106
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	1 cut(s)	104
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	1 cut(s)	49
AoxI	GGCC	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	39
BccI	CCATC	1 cut(s)	19
BceAI	ACGGC	2 cut(s)	121, 151
BcoDI	GTCTC	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	39
BsaHI	GRCGYC	1 cut(s)	150
BshFI	GGCC	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	126
BsmBI	CGTCTC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	108
Bsp143I	GATC	1 cut(s)	54
BspANI	GGCC	1 cut(s)	108
BspPI	GGATC	1 cut(s)	49
BssMI	GATC	1 cut(s)	54
BssNI	GRCGYC	1 cut(s)	150
BstACI	GRCGYC	1 cut(s)	150
BstKTI	GATC	1 cut(s)	57
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNSI	RCATGY	1 cut(s)	122
BstV2I	GAAGAC	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	108
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	2 cut(s)	16, 119
CviJI	RGCY	2 cut(s)	78, 108
CviKI_1	RGCY	2 cut(s)	78, 108
CviQI	GTAC	1 cut(s)	103
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	106
Esp3I	CGTCTC	1 cut(s)	126
FaeI	CATG	2 cut(s)	19, 122
FaiI	YATR	2 cut(s)	17, 120
FatI	CATG	2 cut(s)	15, 118
HaeIII	GGCC	1 cut(s)	108
HgaI	GACGC	1 cut(s)	116
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	2 cut(s)	19, 122
HinfI	GANTC	1 cut(s)	5
HphI	GGTGA	1 cut(s)	79
Hpy188III	TCNNGA	1 cut(s)	131
Hpy99I	CGWCG	3 cut(s)	132, 152, 167
HpyCH4IV	ACGT	1 cut(s)	150
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	2 cut(s)	19, 122
Kzo9I	GATC	1 cut(s)	54
LpnPI	CCDG	2 cut(s)	88, 122
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	2 cut(s)	70, 85
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	124
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	2 cut(s)	19, 122
NmuCI	GTSAC	1 cut(s)	85
NspI	RCATGY	1 cut(s)	122
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
Sau3AI	GATC	1 cut(s)	54
SchI	GAGTC	1 cut(s)	14
SetI	ASST	1 cut(s)	153
SgeI	CNNG	7 cut(s)	28, 87, 112, 121, 131, 136, 143
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	2 cut(s)	99, 130
TseFI	GTSAC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	32
XceI	RCATGY	1 cut(s)	122
XcmI	CCANNNNNNNNNTGG	1 cut(s)	22
ZraI	GACGTC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.