FvH4_2g20440

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000457
Physical Location & Seq
Reverse (-)
17137853 .. 17138562
710 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g20440.t1

Sequence Viewer

Length: 465 bp
ATGTCTACTGAAACGAAGAAGATACTAGTCCTGCATACCGCGGACAATGAGACTTTCGAGATTGAAGAGGCGGTGGTCCTCCAATCCCAGACGATAAAACACATGGTGGAGGACGAATGTGCCGACAACGCCATTCCTTTACCTAATGTCACCAGTAAGACCCTCTCTAAGGTGCTCGAGTACTGCAAGAAGCACGCAGAGGATTCCGGCGAGGGCGGCGAGGAGGCTCTCAGGGCATGGGACGCAGATTTCGTCAACTTCGACACGGACACACTCTATGATGTCATCATGGCAGCCAACTATTTGAACATCAAGAGCTTGCTGGACCTGACCTGCCAGAGAGTCGCGGACATGTGCAAGGGAAAGACTCCTGAAGAGATTCGAAATACTTTCAACATCAAGAACGACTTCAGTCCTGAAGAAGAAGAGGCCGTTCGGAGGGAGAACCAATGGGCCTTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

155

Amino Acids

17.54

Weight (kDa)

4.51

Isoelectric Point (pI)

54.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 8 - 66 2.1e-25 Skp1 family, tetramerisation domain
Skp1 PF01466 105 - 152 2.1e-28 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 341
AccI GTMKAC 1 cut(s) 5
AccII CGCG 2 cut(s) 41, 347
AciI CCGC 5 cut(s) 39, 41, 71, 216, 347
AcuI CTGAAG 3 cut(s) 393, 394, 438
AdeI CACNNNGTG 1 cut(s) 106
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 2 cut(s) 169, 438
AflIII ACRYGT 1 cut(s) 351
AgsI TTSAA 3 cut(s) 65, 307, 394
AhlI ACTAGT 1 cut(s) 25
AluBI AGCT 1 cut(s) 318
AluI AGCT 1 cut(s) 318
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 44
Ama87I CYCGRG 1 cut(s) 176
AoxI GGCC 2 cut(s) 429, 453
ApeKI GCWGC 1 cut(s) 293
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
Asp700I GAANNNNTTC 2 cut(s) 378, 407
AspS9I GGNCC 3 cut(s) 76, 325, 453
AsuHPI GGTGA 1 cut(s) 142
AsuII TTCGAA 1 cut(s) 382
AvaI CYCGRG 1 cut(s) 176
AvaII GGWCC 2 cut(s) 76, 325
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 305
BceAI ACGGC 1 cut(s) 416
BcoDI GTCTC 1 cut(s) 44
BcuI ACTAGT 1 cut(s) 25
BfaI CTAG 1 cut(s) 26
BfuAI ACCTGC 1 cut(s) 341
BisI GCNGC 2 cut(s) 217, 294
BlsI GCNGC 2 cut(s) 218, 295
BmcAI AGTACT 1 cut(s) 182
Bme18I GGWCC 2 cut(s) 76, 325
BmeT110I CYCGRG 1 cut(s) 176
BmgT120I GGNCC 3 cut(s) 76, 325, 453
BoxI GACNNNNGTC 1 cut(s) 411
Bpu14I TTCGAA 1 cut(s) 382
BsaJI CCNNGG 1 cut(s) 39
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 438
Bse1I ACTGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 39
BseLI CCNNNNNNNGG 2 cut(s) 169, 438
BseMII CTCAG 1 cut(s) 244
BseNI ACTGG 1 cut(s) 153
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 1 cut(s) 305
Bsh1236I CGCG 2 cut(s) 41, 347
BshFI GGCC 2 cut(s) 431, 455
BsiHKAI GWGCWC 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 169, 438
BsmAI GTCTC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 2 cut(s) 431, 455
BsoBI CYCGRG 1 cut(s) 176
Bsp119I TTCGAA 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 177
BspACI CCGC 5 cut(s) 39, 41, 71, 216, 347
BspANI GGCC 2 cut(s) 431, 455
BspCNI CTCAG 1 cut(s) 243
BspFNI CGCG 2 cut(s) 41, 347
BspMI ACCTGC 1 cut(s) 341
BspT104I TTCGAA 1 cut(s) 382
BsrI ACTGG 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 39
Bst6I CTCTTC 3 cut(s) 60, 369, 420
BstBI TTCGAA 1 cut(s) 382
BstC8I GCNNGC 2 cut(s) 195, 320
BstDEI CTNAG 2 cut(s) 168, 230
BstDSI CCRYGG 1 cut(s) 39
BstENI CCTNNNNNAGG 1 cut(s) 167
BstFNI CGCG 2 cut(s) 41, 347
BstMAI GTCTC 1 cut(s) 44
BstMWI GCNNNNNNNGC 4 cut(s) 128, 216, 233, 242
BstNSI RCATGY 1 cut(s) 355
BstPAI GACNNNNGTC 1 cut(s) 411
BstUI CGCG 2 cut(s) 41, 347
BstV1I GCAGC 1 cut(s) 305
BsuRI GGCC 2 cut(s) 431, 455
BtgI CCRYGG 1 cut(s) 39
BveI ACCTGC 1 cut(s) 341
Cac8I GCNNGC 2 cut(s) 195, 320
Cfr13I GGNCC 3 cut(s) 76, 325, 453
Cfr42I CCGCGG 1 cut(s) 42
CseI GACGC 1 cut(s) 251
Csp6I GTAC 1 cut(s) 181
CviAII CATG 4 cut(s) 103, 237, 289, 352
CviJI RGCY 5 cut(s) 227, 296, 318, 431, 455
CviKI_1 RGCY 5 cut(s) 227, 296, 318, 431, 455
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 2 cut(s) 168, 230
DraIII CACNNNGTG 1 cut(s) 106
Eam1104I CTCTTC 3 cut(s) 60, 369, 420
EarI CTCTTC 3 cut(s) 60, 369, 420
Eco47I GGWCC 2 cut(s) 76, 325
Eco57I CTGAAG 3 cut(s) 393, 394, 438
Eco88I CYCGRG 1 cut(s) 176
EcoNI CCTNNNNNAGG 1 cut(s) 167
FaeI CATG 4 cut(s) 106, 240, 292, 355
FaiI YATR 6 cut(s) 36, 104, 238, 279, 290, 353
FalI AAGNNNNNCTT 2 cut(s) 392, 424
FaqI GGGAC 1 cut(s) 254
FatI CATG 4 cut(s) 102, 236, 288, 351
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 217, 294
Fsp4HI GCNGC 2 cut(s) 217, 294
FspBI CTAG 1 cut(s) 26
GluI GCNGC 2 cut(s) 217, 294
HaeIII GGCC 2 cut(s) 431, 455
HapII CCGG 1 cut(s) 207
HgaI GACGC 1 cut(s) 251
Hin1II CATG 4 cut(s) 106, 240, 292, 355
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 4 cut(s) 203, 342, 367, 379
HpaII CCGG 1 cut(s) 207
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 2 cut(s) 6, 256
Hpy188I TCNGA 1 cut(s) 438
Hpy188III TCNNGA 5 cut(s) 58, 313, 371, 400, 416
Hpy8I GTNNAC 2 cut(s) 6, 256
HpyCH4V TGCA 3 cut(s) 34, 186, 357
HpyF10VI GCNNNNNNNGC 4 cut(s) 128, 216, 233, 242
HpyF3I CTNAG 2 cut(s) 168, 230
Hsp92II CATG 4 cut(s) 106, 240, 292, 355
KspI CCGCGG 1 cut(s) 42
Lsp1109I GCAGC 1 cut(s) 305
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 148
MboII GAAGA 7 cut(s) 28, 31, 77, 386, 431, 434, 437
MhlI GDGCHC 1 cut(s) 177
MlyI GAGTC 2 cut(s) 351, 361
MroXI GAANNNNTTC 2 cut(s) 378, 407
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 1 cut(s) 207
MvnI CGCG 2 cut(s) 41, 347
MwoI GCNNNNNNNGC 4 cut(s) 128, 216, 233, 242
NlaIII CATG 4 cut(s) 106, 240, 292, 355
NmuCI GTSAC 1 cut(s) 148
NspI RCATGY 1 cut(s) 355
NspV TTCGAA 1 cut(s) 382
PaeR7I CTCGAG 1 cut(s) 176
PciI ACATGT 1 cut(s) 351
PcsI WCGNNNNNNNCGW 3 cut(s) 120, 249, 258
PdmI GAANNNNTTC 2 cut(s) 378, 407
PfeI GAWTC 2 cut(s) 203, 379
PkrI GCNGC 2 cut(s) 218, 295
PleI GAGTC 2 cut(s) 350, 361
PpsI GAGTC 2 cut(s) 350, 361
PscI ACATGT 1 cut(s) 351
PshAI GACNNNNGTC 1 cut(s) 411
PspPI GGNCC 3 cut(s) 76, 325, 453
PspXI VCTCGAGB 1 cut(s) 176
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SacII CCGCGG 1 cut(s) 42
SatI GCNGC 2 cut(s) 217, 294
Sau96I GGNCC 3 cut(s) 76, 325, 453
ScaI AGTACT 1 cut(s) 182
SchI GAGTC 2 cut(s) 351, 361
SduI GDGCHC 1 cut(s) 177
SetI ASST 5 cut(s) 145, 174, 320, 330, 335
Sfr274I CTCGAG 1 cut(s) 176
Sfr303I CCGCGG 1 cut(s) 42
SfuI TTCGAA 1 cut(s) 382
SgrBI CCGCGG 1 cut(s) 42
SinI GGWCC 2 cut(s) 76, 325
SlaI CTCGAG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SpeI ACTAGT 1 cut(s) 25
SsiI CCGC 5 cut(s) 39, 41, 71, 216, 347
SspMI CTAG 1 cut(s) 26
TaqI TCGA 4 cut(s) 57, 177, 261, 382
TatI WGTACW 1 cut(s) 180
TauI GCSGC 1 cut(s) 219
TfiI GAWTC 2 cut(s) 203, 379
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 1 cut(s) 293
Tsp45I GTSAC 1 cut(s) 148
TspGWI ACGGA 1 cut(s) 281
VpaK11BI GGWCC 2 cut(s) 76, 325
XagI CCTNNNNNAGG 1 cut(s) 167
XceI RCATGY 1 cut(s) 355
XhoI CTCGAG 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 2 cut(s) 378, 407
XspI CTAG 1 cut(s) 26
ZrmI AGTACT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.