RLG00000015387

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000457
Physical Location & Seq
Reverse (-)
65353498 .. 65353986
489 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015387

Sequence Viewer

Length: 489 bp
ATGTCGACTGAAATTGGGAACAAGAAGCTAACCCTGACCAGCTGCGACGGAGATGATTTTGAGATTAGAGAGGCGGTTGCCCTTGAATCGCAGACCATCAAGCACATGGTGGAGGACGGCTGCGCCGATAATGCGATCCCCTTGCCGAACGTCTCCAGCAGCATCCTAGCCAAGGTCATCGAGTACTGCAACAGGCACGTTGAGGACAAGGAAAGCAAGAATGAAGACAATAAGAATGATAAGGAGAAGTCTGTTGAGAAATTCGACGCCGAGTTCGTGAAAGTCGACCAGAACGTCCTGTTCGATCTGATATTGGCAGCAAACTATCTGAACATCAAGGGGCTGCTGGACTTGACATGCCAGACTGTGGCAGACATGATAAAGGGAAAGACTCCCGAAGAGATTCGCAAGACTTTCAACATCCAGAATGACTTCACTCCTGAGGAAGAAGAGGAGGTTCGAAGGGAGAACCAATGGGCTTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

163

Amino Acids

18.46

Weight (kDa)

4.54

Isoelectric Point (pI)

53.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 8 - 67 1.1e-26 Skp1 family, tetramerisation domain
Skp1 PF01466 113 - 160 4.4e-32 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 293
AccB7I CCANNNNNTGG 1 cut(s) 367
AccI GTMKAC 2 cut(s) 5, 285
AciI CCGC 1 cut(s) 74
AclWI GGATC 1 cut(s) 130
AcsI RAATTY 1 cut(s) 260
AcyI GRCGYC 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 109
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 2 cut(s) 172, 367
AgsI TTSAA 2 cut(s) 86, 418
AluBI AGCT 2 cut(s) 28, 42
AluI AGCT 2 cut(s) 28, 42
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 1 cut(s) 130
ApeKI GCWGC 5 cut(s) 42, 120, 159, 317, 343
ApoI RAATTY 1 cut(s) 260
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
Asp700I GAANNNNTTC 2 cut(s) 402, 431
AspLEI GCGC 1 cut(s) 125
AsuII TTCGAA 1 cut(s) 460
AxyI CCTNAGG 1 cut(s) 441
BbsI GAAGAC 1 cut(s) 231
BbvI GCAGC 5 cut(s) 29, 107, 171, 329, 330
BccI CCATC 1 cut(s) 104
BceAI ACGGC 1 cut(s) 133
BcgI CGANNNNNNTGC 2 cut(s) 124, 158
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 1 cut(s) 167
BisI GCNGC 5 cut(s) 43, 121, 160, 318, 344
BlsI GCNGC 5 cut(s) 44, 122, 161, 319, 345
BmcAI AGTACT 1 cut(s) 185
BmsI GCATC 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 231
BpmI CTGGAG 1 cut(s) 139
Bpu14I TTCGAA 1 cut(s) 460
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 171
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 367
Bse21I CCTNAGG 1 cut(s) 441
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 2 cut(s) 162, 420
BseLI CCNNNNNNNGG 2 cut(s) 172, 367
BseMII CTCAG 1 cut(s) 432
BseRI GAGGAG 1 cut(s) 467
BseXI GCAGC 5 cut(s) 29, 107, 171, 329, 330
BslI CCNNNNNNNGG 2 cut(s) 172, 367
BsmAI GTCTC 1 cut(s) 157
BsmBI CGTCTC 1 cut(s) 157
Bsp119I TTCGAA 1 cut(s) 460
Bsp143I GATC 2 cut(s) 135, 304
BspACI CCGC 1 cut(s) 74
BspCNI CTCAG 1 cut(s) 433
BspPI GGATC 1 cut(s) 130
BspT104I TTCGAA 1 cut(s) 460
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 2 cut(s) 135, 304
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 2 cut(s) 393, 444
BstACI GRCGYC 1 cut(s) 267
BstBI TTCGAA 1 cut(s) 460
BstDEI CTNAG 1 cut(s) 441
BstENI CCTNNNNNAGG 1 cut(s) 170
BstF5I GGATG 2 cut(s) 162, 420
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 2 cut(s) 138, 307
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 2 cut(s) 135, 304
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 360
BstV1I GCAGC 5 cut(s) 29, 107, 171, 329, 330
BstV2I GAAGAC 1 cut(s) 231
Bsu36I CCTNAGG 1 cut(s) 441
BtsCI GGATG 2 cut(s) 162, 420
CfoI GCGC 1 cut(s) 125
CseI GACGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 184
CviAII CATG 3 cut(s) 106, 357, 376
CviJI RGCY 6 cut(s) 28, 42, 120, 170, 343, 479
CviKI_1 RGCY 6 cut(s) 28, 42, 120, 170, 343, 479
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 441
DpnI GATC 2 cut(s) 137, 306
DpnII GATC 2 cut(s) 135, 304
DraIII CACNNNGTG 1 cut(s) 109
DrdI GACNNNNNNGTC 1 cut(s) 293
DseDI GACNNNNNNGTC 1 cut(s) 293
Eam1104I CTCTTC 2 cut(s) 393, 444
EarI CTCTTC 2 cut(s) 393, 444
Eco130I CCWWGG 1 cut(s) 171
Eco81I CCTNAGG 1 cut(s) 441
EcoNI CCTNNNNNAGG 1 cut(s) 170
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
Esp3I CGTCTC 1 cut(s) 157
FaeI CATG 3 cut(s) 109, 360, 379
FaiI YATR 3 cut(s) 107, 358, 377
FatI CATG 3 cut(s) 105, 356, 375
FblI GTMKAC 2 cut(s) 5, 285
Fnu4HI GCNGC 5 cut(s) 43, 121, 160, 318, 344
FokI GGATG 2 cut(s) 149, 407
Fsp4HI GCNGC 5 cut(s) 43, 121, 160, 318, 344
FspBI CTAG 1 cut(s) 167
GlaI GCGC 1 cut(s) 124
GluI GCNGC 5 cut(s) 43, 121, 160, 318, 344
GsuI CTGGAG 1 cut(s) 139
HgaI GACGC 1 cut(s) 275
HhaI GCGC 1 cut(s) 125
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 3 cut(s) 109, 360, 379
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HincII GTYRAC 2 cut(s) 6, 286
HindII GTYRAC 2 cut(s) 6, 286
HinfI GANTC 3 cut(s) 86, 391, 403
Hpy166II GTNNAC 2 cut(s) 6, 286
Hpy188I TCNGA 2 cut(s) 309, 330
Hpy188III TCNNGA 4 cut(s) 277, 395, 424, 440
Hpy8I GTNNAC 2 cut(s) 6, 286
Hpy99I CGWCG 2 cut(s) 50, 269
HpyAV CCTTC 1 cut(s) 456
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 3 cut(s) 150, 198, 294
HpyCH4V TGCA 1 cut(s) 189
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 441
HpySE526I ACGT 3 cut(s) 150, 198, 294
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 3 cut(s) 109, 360, 379
HspAI GCGC 1 cut(s) 123
Kzo9I GATC 2 cut(s) 135, 304
Lsp1109I GCAGC 5 cut(s) 29, 107, 171, 329, 330
LweI GCATC 1 cut(s) 171
MaeI CTAG 1 cut(s) 167
MaeII ACGT 3 cut(s) 150, 198, 294
MalI GATC 2 cut(s) 137, 306
MboI GATC 2 cut(s) 135, 304
MboII GAAGA 4 cut(s) 236, 410, 458, 461
MluCI AATT 2 cut(s) 12, 260
MlyI GAGTC 1 cut(s) 385
MnlI CCTC 6 cut(s) 64, 106, 196, 436, 445, 448
MroXI GAANNNNTTC 2 cut(s) 402, 431
MspA1I CMGCKG 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 2 cut(s) 135, 304
NlaIII CATG 3 cut(s) 109, 360, 379
NmeAIII GCCGAG 1 cut(s) 295
NspI RCATGY 1 cut(s) 360
NspV TTCGAA 1 cut(s) 460
PcsI WCGNNNNNNNCGW 5 cut(s) 123, 273, 282, 291, 300
PdmI GAANNNNTTC 2 cut(s) 402, 431
PfeI GAWTC 2 cut(s) 86, 403
PflMI CCANNNNNTGG 1 cut(s) 367
PkrI GCNGC 5 cut(s) 44, 122, 161, 319, 345
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
PvuII CAGCTG 1 cut(s) 42
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SalI GTCGAC 2 cut(s) 4, 284
SatI GCNGC 5 cut(s) 43, 121, 160, 318, 344
Sau3AI GATC 2 cut(s) 135, 304
ScaI AGTACT 1 cut(s) 185
SchI GAGTC 1 cut(s) 385
SetI ASST 7 cut(s) 30, 44, 153, 177, 201, 297, 459
SfaNI GCATC 1 cut(s) 171
SfuI TTCGAA 1 cut(s) 460
Sse9I AATT 2 cut(s) 12, 260
SsiI CCGC 1 cut(s) 74
SspMI CTAG 1 cut(s) 167
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 3 cut(s) 153, 201, 297
TaqI TCGA 6 cut(s) 5, 180, 264, 285, 303, 460
TasI AATT 2 cut(s) 12, 260
TatI WGTACW 1 cut(s) 183
TfiI GAWTC 2 cut(s) 86, 403
TseI GCWGC 5 cut(s) 42, 120, 159, 317, 343
TspDTI ATGAA 1 cut(s) 237
TspGWI ACGGA 1 cut(s) 63
Van91I CCANNNNNTGG 1 cut(s) 367
XagI CCTNNNNNAGG 1 cut(s) 170
XapI RAATTY 1 cut(s) 260
XceI RCATGY 1 cut(s) 360
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XmiI GTMKAC 2 cut(s) 5, 285
XmnI GAANNNNTTC 2 cut(s) 402, 431
XspI CTAG 1 cut(s) 167
ZrmI AGTACT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.