Rw7G031310

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000457
Physical Location & Seq
Reverse (-)
44786523 .. 44792965
6443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G031310.1

Sequence Viewer

Length: 462 bp
ATGTCGTCTGAGAAGAAGATCATAACCCTTAAGAGCTCCGACAACGAGACCTTCGAGGTCGACGAGGCGGTGGCCGTGCAATCACAGCCCATCAAGTACAGGGTGGAGGGCGGCTGCACCGACGAGGCGATCCCCTTGCCCAACGTCACCGGCGCCATCCTAGCCAAGGTGATCGACTACTGCAAGAAGCACGTTGAGGAGGGCGGCAAAGATGCCGAGGAGGCGTTGAAGGCTTTTGACTCCGAATTCGTCAAGGTCGACAAGAACGTCCTGTTCGCCCTCACCTTGGCTGCCGACTATCTATACATCAAGGGCCTTCTGGATCTGACTTGCCAGACTCTGGCAGACATGATTAAGGGGAAGACTCCTGAAGAGATCCGCAAGACTTTCAACATTAAGAATGACTTTACTCCTGAAGAAGAGGAGGAGGTTCGTAGGGAGAACCAGTGGGCATTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

153

Amino Acids

17.24

Weight (kDa)

4.68

Isoelectric Point (pI)

41.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 6 - 65 1e-22 Skp1 family, tetramerisation domain
Skp1 PF01466 104 - 151 3.9e-31 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AccB1I GGYRCC 1 cut(s) 152
AccB7I CCANNNNNTGG 1 cut(s) 340
AccI GTMKAC 2 cut(s) 60, 258
AciI CCGC 4 cut(s) 68, 111, 204, 379
AclWI GGATC 3 cut(s) 124, 330, 370
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 1 cut(s) 245
AcuI CTGAAG 2 cut(s) 390, 435
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 3 cut(s) 166, 286, 340
AflII CTTAAG 1 cut(s) 29
AgsI TTSAA 2 cut(s) 229, 391
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 3 cut(s) 124, 330, 370
AlwNI CAGNNNCTG 1 cut(s) 340
AoxI GGCC 2 cut(s) 72, 313
ApeKI GCWGC 2 cut(s) 114, 290
ApoI RAATTY 1 cut(s) 245
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
AspLEI GCGC 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 313
AsuHPI GGTGA 3 cut(s) 139, 181, 274
BanI GGYRCC 1 cut(s) 152
BanII GRGCYC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 368
Bbv12I GWGCWC 1 cut(s) 38
BbvI GCAGC 2 cut(s) 101, 277
BccI CCATC 2 cut(s) 98, 164
BceAI ACGGC 1 cut(s) 59
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 1 cut(s) 161
BfoI RGCGCY 1 cut(s) 156
BfrI CTTAAG 1 cut(s) 29
BglI GCCNNNNNGGC 1 cut(s) 221
BisI GCNGC 4 cut(s) 112, 115, 205, 291
BlsI GCNGC 4 cut(s) 113, 116, 206, 292
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 1 cut(s) 154
BmsI GCATC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 368
BsaHI GRCGYC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 3 cut(s) 165, 216, 285
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 286, 340
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 445
BseDI CCNNGG 3 cut(s) 165, 216, 285
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 3 cut(s) 166, 286, 340
BseNI ACTGG 1 cut(s) 445
BseRI GAGGAG 4 cut(s) 212, 233, 437, 440
BseXI GCAGC 2 cut(s) 101, 277
BsgI GTGCAG 1 cut(s) 100
BshFI GGCC 2 cut(s) 74, 315
BshNI GGYRCC 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 38
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 3 cut(s) 166, 286, 340
BsmAI GTCTC 1 cut(s) 41
BsnI GGCC 2 cut(s) 74, 315
Bso31I GGTCTC 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 5 cut(s) 18, 129, 171, 322, 375
BspACI CCGC 4 cut(s) 68, 111, 204, 379
BspANI GGCC 2 cut(s) 74, 315
BspLI GGNNCC 1 cut(s) 154
BspPI GGATC 3 cut(s) 124, 330, 370
BspT107I GGYRCC 1 cut(s) 152
BspTI CTTAAG 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 41
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 1 cut(s) 445
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 3 cut(s) 165, 216, 285
BssMI GATC 5 cut(s) 18, 129, 171, 322, 375
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 2 cut(s) 165, 285
Bst6I CTCTTC 2 cut(s) 366, 414
BstACI GRCGYC 1 cut(s) 153
BstAFI CTTAAG 1 cut(s) 29
BstDEI CTNAG 1 cut(s) 9
BstENI CCTNNNNNAGG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 156
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 5 cut(s) 21, 132, 174, 325, 378
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 5 cut(s) 18, 129, 171, 322, 375
BstMWI GCNNNNNNNGC 4 cut(s) 85, 161, 221, 230
BstV1I GCAGC 2 cut(s) 101, 277
BstV2I GAAGAC 1 cut(s) 368
BstX2I RGATCY 2 cut(s) 322, 375
BstYI RGATCY 2 cut(s) 322, 375
BsuRI GGCC 2 cut(s) 74, 315
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 452
CaiI CAGNNNCTG 1 cut(s) 340
CfoI GCGC 1 cut(s) 155
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 313
Csp6I GTAC 1 cut(s) 97
CviAII CATG 1 cut(s) 349
CviJI RGCY 8 cut(s) 36, 74, 88, 114, 164, 233, 290, 315
CviKI_1 RGCY 8 cut(s) 36, 74, 88, 114, 164, 233, 290, 315
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 1 cut(s) 9
DinI GGCGCC 1 cut(s) 154
DpnI GATC 5 cut(s) 20, 131, 173, 324, 377
DpnII GATC 5 cut(s) 18, 129, 171, 322, 375
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 2 cut(s) 366, 414
EarI CTCTTC 2 cut(s) 366, 414
Ecl136II GAGCTC 1 cut(s) 36
Eco130I CCWWGG 2 cut(s) 165, 285
Eco24I GRGCYC 1 cut(s) 38
Eco31I GGTCTC 1 cut(s) 41
Eco53kI GAGCTC 1 cut(s) 36
Eco57I CTGAAG 2 cut(s) 390, 435
EcoICRI GAGCTC 1 cut(s) 36
EcoNI CCTNNNNNAGG 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 313
EcoRI GAATTC 1 cut(s) 245
EcoT14I CCWWGG 2 cut(s) 165, 285
EcoT38I GRGCYC 1 cut(s) 38
EgeI GGCGCC 1 cut(s) 154
EheI GGCGCC 1 cut(s) 154
ErhI CCWWGG 2 cut(s) 165, 285
FaeI CATG 1 cut(s) 352
FaiI YATR 3 cut(s) 23, 304, 350
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FatI CATG 1 cut(s) 348
FblI GTMKAC 2 cut(s) 60, 258
Fnu4HI GCNGC 4 cut(s) 112, 115, 205, 291
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 4 cut(s) 112, 115, 205, 291
FspBI CTAG 1 cut(s) 161
GlaI GCGC 1 cut(s) 154
GluI GCNGC 4 cut(s) 112, 115, 205, 291
HaeII RGCGCY 1 cut(s) 156
HaeIII GGCC 2 cut(s) 74, 315
HapII CCGG 1 cut(s) 150
HhaI GCGC 1 cut(s) 155
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 1 cut(s) 352
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HincII GTYRAC 2 cut(s) 61, 259
HindII GTYRAC 2 cut(s) 61, 259
HinfI GANTC 3 cut(s) 239, 337, 364
HpaII CCGG 1 cut(s) 150
HphI GGTGA 3 cut(s) 139, 181, 274
Hpy166II GTNNAC 2 cut(s) 61, 259
Hpy188I TCNGA 4 cut(s) 10, 40, 244, 327
Hpy188III TCNNGA 3 cut(s) 320, 368, 413
Hpy8I GTNNAC 2 cut(s) 61, 259
Hpy99I CGWCG 2 cut(s) 65, 125
HpyAV CCTTC 3 cut(s) 61, 223, 326
HpyCH4IV ACGT 3 cut(s) 144, 192, 267
HpyCH4V TGCA 3 cut(s) 79, 117, 183
HpyF10VI GCNNNNNNNGC 4 cut(s) 85, 161, 221, 230
HpyF3I CTNAG 1 cut(s) 9
HpySE526I ACGT 3 cut(s) 144, 192, 267
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 1 cut(s) 352
HspAI GCGC 1 cut(s) 153
KasI GGCGCC 1 cut(s) 152
Kzo9I GATC 5 cut(s) 18, 129, 171, 322, 375
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 9 cut(s) 85, 163, 284, 305, 326, 347, 381, 426, 458
Lsp1109I GCAGC 2 cut(s) 101, 277
LweI GCATC 1 cut(s) 202
MaeI CTAG 1 cut(s) 161
MaeII ACGT 3 cut(s) 144, 192, 267
MaeIII GTNAC 1 cut(s) 145
MalI GATC 5 cut(s) 20, 131, 173, 324, 377
MboI GATC 5 cut(s) 18, 129, 171, 322, 375
MboII GAAGA 6 cut(s) 25, 28, 373, 383, 428, 431
MflI RGATCY 2 cut(s) 322, 375
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 1 cut(s) 245
Mly113I GGCGCC 1 cut(s) 153
MlyI GAGTC 3 cut(s) 233, 331, 358
MmeI TCCRAC 1 cut(s) 63
MseI TTAA 3 cut(s) 30, 354, 396
MslI CAYNNNNRTG 1 cut(s) 457
MspCI CTTAAG 1 cut(s) 29
MspI CCGG 1 cut(s) 150
MwoI GCNNNNNNNGC 4 cut(s) 85, 161, 221, 230
NarI GGCGCC 1 cut(s) 153
NdeII GATC 5 cut(s) 18, 129, 171, 322, 375
NlaIII CATG 1 cut(s) 352
NlaIV GGNNCC 1 cut(s) 154
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 145
PcsI WCGNNNNNNNCGW 4 cut(s) 51, 60, 255, 264
PflMI CCANNNNNTGG 1 cut(s) 340
PkrI GCNGC 4 cut(s) 113, 116, 206, 292
PleI GAGTC 3 cut(s) 233, 331, 358
PluTI GGCGCC 1 cut(s) 156
PpsI GAGTC 3 cut(s) 233, 331, 358
Psp124BI GAGCTC 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 1 cut(s) 313
PstNI CAGNNNCTG 1 cut(s) 340
PsuI RGATCY 2 cut(s) 322, 375
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 457
SacI GAGCTC 1 cut(s) 38
SalI GTCGAC 2 cut(s) 59, 257
SaqAI TTAA 3 cut(s) 30, 354, 396
SatI GCNGC 4 cut(s) 112, 115, 205, 291
Sau3AI GATC 5 cut(s) 18, 129, 171, 322, 375
Sau96I GGNCC 1 cut(s) 313
SchI GAGTC 3 cut(s) 233, 331, 358
SduI GDGCHC 1 cut(s) 38
SfaNI GCATC 1 cut(s) 202
SfoI GGCGCC 1 cut(s) 154
SgrAI CRCCGGYG 1 cut(s) 149
SmiMI CAYNNNNRTG 1 cut(s) 457
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 1 cut(s) 245
SsiI CCGC 4 cut(s) 68, 111, 204, 379
SspDI GGCGCC 1 cut(s) 152
SspMI CTAG 1 cut(s) 161
SstI GAGCTC 1 cut(s) 38
StyI CCWWGG 2 cut(s) 165, 285
TaiI ACGT 3 cut(s) 147, 195, 270
TaqI TCGA 4 cut(s) 54, 60, 174, 258
TasI AATT 1 cut(s) 245
TatI WGTACW 1 cut(s) 96
TauI GCSGC 2 cut(s) 114, 207
Tru1I TTAA 3 cut(s) 30, 354, 396
Tru9I TTAA 3 cut(s) 30, 354, 396
TscAI CASTG 1 cut(s) 452
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 2 cut(s) 114, 290
Tsp45I GTSAC 1 cut(s) 145
TspRI CASTG 1 cut(s) 452
Van91I CCANNNNNTGG 1 cut(s) 340
Vha464I CTTAAG 1 cut(s) 29
XagI CCTNNNNNAGG 1 cut(s) 164
XapI RAATTY 1 cut(s) 245
XmiI GTMKAC 2 cut(s) 60, 258
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.