Rmu_sc0000144.1_g000032

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000144.1
OG0000457
Physical Location & Seq
Forward (+)
110369 .. 114207
3839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000144.1_g000032.1.cds

Sequence Viewer

Length: 462 bp
atgtcgtccgagaagaagatcataacccttaagagctccgacaacgagaccttcgaggtcgacgaggcggtggccgtgcaatcgcagcccatcaagtacagggtggagggctgctgcaccgacgaggcgatccccttgcccaacgtcaccggcgccatcctagccaaggtgatcgagtactgcaagaagcacgttgaggagggcggcaaagatggcgaggaggcgttgaaggcttttgactccgaattcgtcaaggtcgacaagaacgtcctgctcgccctcaccttggctgccgactatctgtacatcaagggccttctggatctgacttgccagactctggcagacatgattaaggggaagactcctgaggagatccgcaagactttcaacattaagaatgacttcactcctgaagaagaggaggaggttcggagggagaaccagtgggcatttgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

153

Amino Acids

17.25

Weight (kDa)

4.69

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AccB1I GGYRCC 1 cut(s) 152
AccB7I CCANNNNNTGG 1 cut(s) 340
AccI GTMKAC 2 cut(s) 60, 258
AciI CCGC 3 cut(s) 68, 204, 379
AclWI GGATC 3 cut(s) 124, 330, 370
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 1 cut(s) 245
AcuI CTGAAG 1 cut(s) 435
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 3 cut(s) 98, 179, 305
AfiI CCNNNNNNNGG 3 cut(s) 166, 286, 340
AflII CTTAAG 1 cut(s) 29
AgsI TTSAA 2 cut(s) 229, 391
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 3 cut(s) 124, 330, 370
AlwNI CAGNNNCTG 1 cut(s) 340
AoxI GGCC 2 cut(s) 72, 313
ApeKI GCWGC 4 cut(s) 85, 111, 114, 290
ApoI RAATTY 1 cut(s) 245
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
Asp700I GAANNNNTTC 1 cut(s) 404
AspLEI GCGC 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 313
AsuHPI GGTGA 3 cut(s) 139, 181, 274
AxyI CCTNAGG 1 cut(s) 369
BanI GGYRCC 1 cut(s) 152
BanII GRGCYC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 368
Bbv12I GWGCWC 1 cut(s) 38
BbvI GCAGC 4 cut(s) 97, 98, 101, 277
BccI CCATC 3 cut(s) 98, 164, 206
BceAI ACGGC 1 cut(s) 59
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 1 cut(s) 161
BfoI RGCGCY 1 cut(s) 156
BfrI CTTAAG 1 cut(s) 29
BisI GCNGC 5 cut(s) 86, 112, 115, 205, 291
BlsI GCNGC 5 cut(s) 87, 113, 116, 206, 292
BmcAI AGTACT 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 368
BsaHI GRCGYC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 2 cut(s) 165, 285
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 286, 340
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 445
Bse21I CCTNAGG 1 cut(s) 369
BseDI CCNNGG 2 cut(s) 165, 285
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 3 cut(s) 166, 286, 340
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 1 cut(s) 445
BseRI GAGGAG 5 cut(s) 212, 233, 386, 437, 440
BseXI GCAGC 4 cut(s) 97, 98, 101, 277
BsgI GTGCAG 1 cut(s) 100
BshFI GGCC 2 cut(s) 74, 315
BshNI GGYRCC 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 38
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 3 cut(s) 166, 286, 340
BsmAI GTCTC 1 cut(s) 41
BsnI GGCC 2 cut(s) 74, 315
Bso31I GGTCTC 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 38
Bsp1407I TGTACA 1 cut(s) 303
Bsp143I GATC 5 cut(s) 18, 129, 171, 322, 375
BspACI CCGC 3 cut(s) 68, 204, 379
BspANI GGCC 2 cut(s) 74, 315
BspCNI CTCAG 1 cut(s) 361
BspLI GGNNCC 1 cut(s) 154
BspPI GGATC 3 cut(s) 124, 330, 370
BspT107I GGYRCC 1 cut(s) 152
BspTI CTTAAG 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 41
BsrFI RCCGGY 1 cut(s) 149
BsrGI TGTACA 1 cut(s) 303
BsrI ACTGG 1 cut(s) 445
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 2 cut(s) 165, 285
BssMI GATC 5 cut(s) 18, 129, 171, 322, 375
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 2 cut(s) 165, 285
Bst6I CTCTTC 1 cut(s) 414
BstACI GRCGYC 1 cut(s) 153
BstAFI CTTAAG 1 cut(s) 29
BstAUI TGTACA 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 1 cut(s) 369
BstENI CCTNNNNNAGG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 156
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 5 cut(s) 21, 132, 174, 325, 378
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 5 cut(s) 18, 129, 171, 322, 375
BstMWI GCNNNNNNNGC 4 cut(s) 85, 161, 213, 230
BstV1I GCAGC 4 cut(s) 97, 98, 101, 277
BstV2I GAAGAC 1 cut(s) 368
BstX2I RGATCY 2 cut(s) 322, 375
BstYI RGATCY 2 cut(s) 322, 375
Bsu36I CCTNAGG 1 cut(s) 369
BsuRI GGCC 2 cut(s) 74, 315
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 452
Cac8I GCNNGC 1 cut(s) 276
CaiI CAGNNNCTG 1 cut(s) 340
CfoI GCGC 1 cut(s) 155
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 313
Csp6I GTAC 3 cut(s) 97, 178, 304
CviAII CATG 1 cut(s) 349
CviJI RGCY 8 cut(s) 36, 74, 88, 111, 164, 233, 290, 315
CviKI_1 RGCY 8 cut(s) 36, 74, 88, 111, 164, 233, 290, 315
CviQI GTAC 3 cut(s) 97, 178, 304
DdeI CTNAG 1 cut(s) 369
DinI GGCGCC 1 cut(s) 154
DpnI GATC 5 cut(s) 20, 131, 173, 324, 377
DpnII GATC 5 cut(s) 18, 129, 171, 322, 375
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
Ecl136II GAGCTC 1 cut(s) 36
Eco130I CCWWGG 2 cut(s) 165, 285
Eco24I GRGCYC 1 cut(s) 38
Eco31I GGTCTC 1 cut(s) 41
Eco53kI GAGCTC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 435
Eco81I CCTNAGG 1 cut(s) 369
EcoICRI GAGCTC 1 cut(s) 36
EcoNI CCTNNNNNAGG 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 313
EcoRI GAATTC 1 cut(s) 245
EcoT14I CCWWGG 2 cut(s) 165, 285
EcoT38I GRGCYC 1 cut(s) 38
EgeI GGCGCC 1 cut(s) 154
EheI GGCGCC 1 cut(s) 154
ErhI CCWWGG 2 cut(s) 165, 285
FaeI CATG 1 cut(s) 352
FaiI YATR 2 cut(s) 23, 350
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FatI CATG 1 cut(s) 348
FblI GTMKAC 2 cut(s) 60, 258
Fnu4HI GCNGC 5 cut(s) 86, 112, 115, 205, 291
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 5 cut(s) 86, 112, 115, 205, 291
FspBI CTAG 1 cut(s) 161
GlaI GCGC 1 cut(s) 154
GluI GCNGC 5 cut(s) 86, 112, 115, 205, 291
HaeII RGCGCY 1 cut(s) 156
HaeIII GGCC 2 cut(s) 74, 315
HapII CCGG 1 cut(s) 150
HhaI GCGC 1 cut(s) 155
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 1 cut(s) 352
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HincII GTYRAC 2 cut(s) 61, 259
HindII GTYRAC 2 cut(s) 61, 259
HinfI GANTC 3 cut(s) 239, 337, 364
HpaII CCGG 1 cut(s) 150
HphI GGTGA 3 cut(s) 139, 181, 274
Hpy166II GTNNAC 2 cut(s) 61, 259
Hpy188I TCNGA 5 cut(s) 10, 40, 244, 327, 435
Hpy188III TCNNGA 3 cut(s) 320, 368, 413
Hpy8I GTNNAC 2 cut(s) 61, 259
Hpy99I CGWCG 2 cut(s) 65, 125
HpyAV CCTTC 3 cut(s) 61, 223, 326
HpyCH4IV ACGT 3 cut(s) 144, 192, 267
HpyCH4V TGCA 3 cut(s) 79, 117, 183
HpyF10VI GCNNNNNNNGC 4 cut(s) 85, 161, 213, 230
HpyF3I CTNAG 1 cut(s) 369
HpySE526I ACGT 3 cut(s) 144, 192, 267
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 1 cut(s) 352
HspAI GCGC 1 cut(s) 153
KasI GGCGCC 1 cut(s) 152
Kzo9I GATC 5 cut(s) 18, 129, 171, 322, 375
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 9 cut(s) 85, 163, 284, 305, 326, 347, 381, 426, 458
Lsp1109I GCAGC 4 cut(s) 97, 98, 101, 277
MaeI CTAG 1 cut(s) 161
MaeII ACGT 3 cut(s) 144, 192, 267
MaeIII GTNAC 1 cut(s) 145
MalI GATC 5 cut(s) 20, 131, 173, 324, 377
MboI GATC 5 cut(s) 18, 129, 171, 322, 375
MboII GAAGA 5 cut(s) 25, 28, 373, 428, 431
MflI RGATCY 2 cut(s) 322, 375
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 1 cut(s) 245
Mly113I GGCGCC 1 cut(s) 153
MlyI GAGTC 3 cut(s) 233, 331, 358
MmeI TCCRAC 1 cut(s) 63
MroXI GAANNNNTTC 1 cut(s) 404
MseI TTAA 3 cut(s) 30, 354, 396
MslI CAYNNNNRTG 1 cut(s) 457
MspCI CTTAAG 1 cut(s) 29
MspI CCGG 1 cut(s) 150
MwoI GCNNNNNNNGC 4 cut(s) 85, 161, 213, 230
NarI GGCGCC 1 cut(s) 153
NdeII GATC 5 cut(s) 18, 129, 171, 322, 375
NlaIII CATG 1 cut(s) 352
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 145
PcsI WCGNNNNNNNCGW 4 cut(s) 51, 60, 255, 264
PdmI GAANNNNTTC 1 cut(s) 404
PflMI CCANNNNNTGG 1 cut(s) 340
PkrI GCNGC 5 cut(s) 87, 113, 116, 206, 292
PleI GAGTC 3 cut(s) 233, 331, 358
PluTI GGCGCC 1 cut(s) 156
PpsI GAGTC 3 cut(s) 233, 331, 358
Psp124BI GAGCTC 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 1 cut(s) 313
PstNI CAGNNNCTG 1 cut(s) 340
PsuI RGATCY 2 cut(s) 322, 375
RsaI GTAC 3 cut(s) 98, 179, 305
RsaNI GTAC 3 cut(s) 97, 178, 304
RseI CAYNNNNRTG 1 cut(s) 457
SacI GAGCTC 1 cut(s) 38
SalI GTCGAC 2 cut(s) 59, 257
SaqAI TTAA 3 cut(s) 30, 354, 396
SatI GCNGC 5 cut(s) 86, 112, 115, 205, 291
Sau3AI GATC 5 cut(s) 18, 129, 171, 322, 375
Sau96I GGNCC 1 cut(s) 313
ScaI AGTACT 1 cut(s) 179
SchI GAGTC 3 cut(s) 233, 331, 358
SduI GDGCHC 1 cut(s) 38
SfoI GGCGCC 1 cut(s) 154
SgrAI CRCCGGYG 1 cut(s) 149
SmiMI CAYNNNNRTG 1 cut(s) 457
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 1 cut(s) 245
SsiI CCGC 3 cut(s) 68, 204, 379
SspDI GGCGCC 1 cut(s) 152
SspMI CTAG 1 cut(s) 161
SstI GAGCTC 1 cut(s) 38
StyI CCWWGG 2 cut(s) 165, 285
TaiI ACGT 3 cut(s) 147, 195, 270
TaqI TCGA 4 cut(s) 54, 60, 174, 258
TasI AATT 1 cut(s) 245
TatI WGTACW 3 cut(s) 96, 177, 303
TauI GCSGC 1 cut(s) 207
Tru1I TTAA 3 cut(s) 30, 354, 396
Tru9I TTAA 3 cut(s) 30, 354, 396
TscAI CASTG 1 cut(s) 452
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 4 cut(s) 85, 111, 114, 290
Tsp45I GTSAC 1 cut(s) 145
TspRI CASTG 1 cut(s) 452
Van91I CCANNNNNTGG 1 cut(s) 340
Vha464I CTTAAG 1 cut(s) 29
XagI CCTNNNNNAGG 1 cut(s) 164
XapI RAATTY 1 cut(s) 245
XmiI GTMKAC 2 cut(s) 60, 258
XmnI GAANNNNTTC 1 cut(s) 404
XspI CTAG 1 cut(s) 161
ZrmI AGTACT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.