FvH4_5g30320

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000457
Physical Location & Seq
Reverse (-)
21220646 .. 21222292
1647 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30320.t1

Sequence Viewer

Length: 480 bp
ATGTCGTCTGAGAAGAAGCTCATCACCCTGAAGAGCTCCGACAACGAAACCTTCGAGGTCGACGAGGCGGTGGCTCTGGAATCGCAGACCATCAAGCACATGGTGGAGGACGGCTGCGCCGACAATGCGATCCCCTTGCCTAACGTCACCGGTGCTATCCTTGCCAGGGTTATCGAGTACTGCAAGAAGCACGTCGAGGAGGGCGGCAAGGACGCCGAGAAGGACAAGTCCGGCGAGTCTCCGTTGAAGACTTTCGACGCTGAGTTCGTCAAGGTCGACCAGAATGTTCTGTTTGACCTCATTTTGGCTGCTAACTATCTGAACATCAAGGGCCTTCTGGATCTGACTTGCCAGACTGTGGCCGACATGATCAAGGGGAAGACTCCAGAAGAGATCCGCAAGACTTTCAACATTAAGAATGACTTCACTCCTGAAGAAGAAGAGGAGGTTCGAAGGGAGAACCAGTGGGCATTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

160

Amino Acids

17.9

Weight (kDa)

4.65

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 6 - 65 7.2e-28 Skp1 family, tetramerisation domain
Skp1 PF01466 110 - 157 4.6e-32 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 358
AccI GTMKAC 2 cut(s) 60, 276
AciI CCGC 3 cut(s) 68, 204, 397
AclWI GGATC 3 cut(s) 124, 348, 388
AcoI YGGCCR 1 cut(s) 360
AcuI CTGAAG 2 cut(s) 50, 453
AcyI GRCGYC 1 cut(s) 213
AdeI CACNNNGTG 1 cut(s) 103
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 3 cut(s) 166, 304, 358
AgeI ACCGGT 1 cut(s) 149
AgsI TTSAA 2 cut(s) 247, 409
AjiI CACGTC 1 cut(s) 193
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 2 cut(s) 19, 36
AluI AGCT 2 cut(s) 19, 36
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 3 cut(s) 124, 348, 388
AoxI GGCC 2 cut(s) 331, 360
ApeKI GCWGC 2 cut(s) 114, 308
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
AsiGI ACCGGT 1 cut(s) 149
Asp700I GAANNNNTTC 2 cut(s) 251, 422
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 331
AsuHPI GGTGA 2 cut(s) 16, 139
AsuII TTCGAA 1 cut(s) 451
BanII GRGCYC 1 cut(s) 38
BbsI GAAGAC 2 cut(s) 254, 386
Bbv12I GWGCWC 1 cut(s) 38
BbvI GCAGC 2 cut(s) 101, 295
BccI CCATC 1 cut(s) 98
BceAI ACGGC 1 cut(s) 127
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 1 cut(s) 166
BclI TGATCA 1 cut(s) 369
BcoDI GTCTC 1 cut(s) 243
BisI GCNGC 3 cut(s) 115, 205, 309
BlsI GCNGC 3 cut(s) 116, 206, 310
BmcAI AGTACT 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 166
BmgBI CACGTC 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 331
BmrFI CCNGG 1 cut(s) 166
BpiI GAAGAC 2 cut(s) 254, 386
BpmI CTGGAG 1 cut(s) 369
Bpu14I TTCGAA 1 cut(s) 451
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 304, 358
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 463
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 165
BseLI CCNNNNNNNGG 3 cut(s) 166, 304, 358
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 2 cut(s) 212, 458
BseXI GCAGC 2 cut(s) 101, 295
BshFI GGCC 2 cut(s) 333, 362
BshTI ACCGGT 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 38
BsiSI CCGG 2 cut(s) 150, 231
BslI CCNNNNNNNGG 3 cut(s) 166, 304, 358
BsmAI GTCTC 1 cut(s) 243
BsnI GGCC 2 cut(s) 333, 362
Bsp119I TTCGAA 1 cut(s) 451
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 4 cut(s) 129, 340, 369, 393
BspACI CCGC 3 cut(s) 68, 204, 397
BspANI GGCC 2 cut(s) 333, 362
BspCNI CTCAG 1 cut(s) 253
BspPI GGATC 3 cut(s) 124, 348, 388
BspQI GCTCTTC 1 cut(s) 26
BspT104I TTCGAA 1 cut(s) 451
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 1 cut(s) 463
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 4 cut(s) 129, 340, 369, 393
BssNI GRCGYC 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 358
Bst6I CTCTTC 3 cut(s) 26, 384, 435
BstACI GRCGYC 1 cut(s) 213
BstBI TTCGAA 1 cut(s) 451
BstDEI CTNAG 2 cut(s) 9, 261
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 4 cut(s) 132, 343, 372, 396
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 4 cut(s) 129, 340, 369, 393
BstMWI GCNNNNNNNGC 2 cut(s) 125, 161
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 164
BstV1I GCAGC 2 cut(s) 101, 295
BstV2I GAAGAC 2 cut(s) 254, 386
BstX2I RGATCY 2 cut(s) 340, 393
BstYI RGATCY 2 cut(s) 340, 393
BsuRI GGCC 2 cut(s) 333, 362
BtrI CACGTC 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 470
CfoI GCGC 1 cut(s) 119
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 331
CseI GACGC 2 cut(s) 221, 266
Csp6I GTAC 1 cut(s) 178
CspAI ACCGGT 1 cut(s) 149
CviAII CATG 2 cut(s) 100, 367
CviJI RGCY 7 cut(s) 19, 36, 74, 114, 308, 333, 362
CviKI_1 RGCY 7 cut(s) 19, 36, 74, 114, 308, 333, 362
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 2 cut(s) 9, 261
DpnI GATC 4 cut(s) 131, 342, 371, 395
DpnII GATC 4 cut(s) 129, 340, 369, 393
DraIII CACNNNGTG 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 360
Eam1104I CTCTTC 3 cut(s) 26, 384, 435
EarI CTCTTC 3 cut(s) 26, 384, 435
Ecl136II GAGCTC 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 36
Eco57I CTGAAG 2 cut(s) 50, 453
EcoICRI GAGCTC 1 cut(s) 36
EcoO109I RGGNCCY 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 38
FaeI CATG 2 cut(s) 103, 370
FaiI YATR 2 cut(s) 101, 368
FalI AAGNNNNNCTT 2 cut(s) 407, 439
FatI CATG 2 cut(s) 99, 366
FbaI TGATCA 1 cut(s) 369
FblI GTMKAC 2 cut(s) 60, 276
Fnu4HI GCNGC 3 cut(s) 115, 205, 309
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 3 cut(s) 115, 205, 309
GlaI GCGC 1 cut(s) 118
GluI GCNGC 3 cut(s) 115, 205, 309
GsuI CTGGAG 1 cut(s) 369
HaeIII GGCC 2 cut(s) 333, 362
HapII CCGG 2 cut(s) 150, 231
HgaI GACGC 2 cut(s) 221, 266
HhaI GCGC 1 cut(s) 119
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 2 cut(s) 103, 370
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 2 cut(s) 61, 277
HindII GTYRAC 2 cut(s) 61, 277
HinfI GANTC 3 cut(s) 80, 236, 382
HpaII CCGG 2 cut(s) 150, 231
HphI GGTGA 2 cut(s) 16, 139
Hpy166II GTNNAC 2 cut(s) 61, 277
Hpy188I TCNGA 4 cut(s) 10, 40, 321, 345
Hpy188III TCNNGA 4 cut(s) 77, 338, 386, 431
Hpy8I GTNNAC 2 cut(s) 61, 277
Hpy99I CGWCG 3 cut(s) 65, 197, 260
HpyAV CCTTC 4 cut(s) 61, 214, 344, 447
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 2 cut(s) 144, 192
HpyCH4V TGCA 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 161
HpyF3I CTNAG 2 cut(s) 9, 261
HpySE526I ACGT 2 cut(s) 144, 192
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 2 cut(s) 103, 370
HspAI GCGC 1 cut(s) 117
Ksp22I TGATCA 1 cut(s) 369
Kzo9I GATC 4 cut(s) 129, 340, 369, 393
LguI GCTCTTC 1 cut(s) 26
LmnI GCTCC 1 cut(s) 41
Lsp1109I GCAGC 2 cut(s) 101, 295
MaeII ACGT 2 cut(s) 144, 192
MaeIII GTNAC 1 cut(s) 145
MalI GATC 4 cut(s) 131, 342, 371, 395
MboI GATC 4 cut(s) 129, 340, 369, 393
MboII GAAGA 8 cut(s) 25, 43, 259, 391, 401, 446, 449, 452
MflI RGATCY 2 cut(s) 340, 393
MhlI GDGCHC 1 cut(s) 38
MlyI GAGTC 2 cut(s) 245, 376
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 8 cut(s) 49, 58, 100, 190, 193, 308, 436, 439
MroXI GAANNNNTTC 2 cut(s) 251, 422
MseI TTAA 1 cut(s) 414
MslI CAYNNNNRTG 1 cut(s) 475
MspI CCGG 2 cut(s) 150, 231
MspR9I CCNGG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 166
MwoI GCNNNNNNNGC 2 cut(s) 125, 161
NdeII GATC 4 cut(s) 129, 340, 369, 393
NlaIII CATG 2 cut(s) 103, 370
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 145
NspV TTCGAA 1 cut(s) 451
PciSI GCTCTTC 1 cut(s) 26
PcsI WCGNNNNNNNCGW 5 cut(s) 51, 60, 117, 264, 273
PdmI GAANNNNTTC 2 cut(s) 251, 422
PfeI GAWTC 1 cut(s) 80
PflMI CCANNNNNTGG 1 cut(s) 358
PinAI ACCGGT 1 cut(s) 149
PkrI GCNGC 3 cut(s) 116, 206, 310
PleI GAGTC 2 cut(s) 244, 376
PpsI GAGTC 2 cut(s) 244, 376
Psp124BI GAGCTC 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspPI GGNCC 1 cut(s) 331
PsuI RGATCY 2 cut(s) 340, 393
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
RseI CAYNNNNRTG 1 cut(s) 475
SacI GAGCTC 1 cut(s) 38
SalI GTCGAC 2 cut(s) 59, 275
SapI GCTCTTC 1 cut(s) 26
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 3 cut(s) 115, 205, 309
Sau3AI GATC 4 cut(s) 129, 340, 369, 393
Sau96I GGNCC 1 cut(s) 331
ScaI AGTACT 1 cut(s) 179
SchI GAGTC 2 cut(s) 245, 376
ScrFI CCNGG 1 cut(s) 166
SduI GDGCHC 1 cut(s) 38
SetI ASST 9 cut(s) 21, 38, 53, 60, 147, 195, 276, 300, 450
SfuI TTCGAA 1 cut(s) 451
SgrAI CRCCGGYG 1 cut(s) 149
SmiMI CAYNNNNRTG 1 cut(s) 475
SsiI CCGC 3 cut(s) 68, 204, 397
SstI GAGCTC 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 2 cut(s) 147, 195
TaqI TCGA 7 cut(s) 54, 60, 174, 195, 255, 276, 451
TatI WGTACW 1 cut(s) 177
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 1 cut(s) 470
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 2 cut(s) 114, 308
Tsp45I GTSAC 1 cut(s) 145
TspGWI ACGGA 1 cut(s) 231
TspRI CASTG 1 cut(s) 470
Van91I CCANNNNNTGG 1 cut(s) 358
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XmiI GTMKAC 2 cut(s) 60, 276
XmnI GAANNNNTTC 2 cut(s) 251, 422
ZrmI AGTACT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.