RchiOBHm_Chr6g0244391

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000457
Physical Location & Seq
Forward (+)
484706 .. 485101
396 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21903

Sequence Viewer

Length: 396 bp
ATGTCGACTGAAATTGAGAACAAGAAGCTAAATCTGACGAGCTCCGACGGAGAGGAATTCGAGGTTGATGAGGCTGTTGCTCTTCACTCTGAGACCATCAAGCACATGATGGAGGACGGCTGCGCCGATAATGCCATTCCATTGACCGGCGTCATCCTTGCCAAAGTCATCGAGTACTTAAAGAAGCACGCTGAGGACAAGGAAGGCAAGGATCAGAAGAAGTCTCTCAAGAGATTCGACGCCGATTTCGTCGACGTCGAGCTGTCCGTCCTGATTGATCTGATATTGGCAGCAGATCGTCTGAAAATCAAGAAGCTGTGGGACTTGACATGCCAGACTGTGGCGGACATGATCAAAGATCCTGAGGTGAGATTTTCAAACTCAAGAATGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

131

Amino Acids

14.81

Weight (kDa)

4.89

Isoelectric Point (pI)

27.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 8 - 64 1.3e-20 Skp1 family, tetramerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 258
AccB7I CCANNNNNTGG 1 cut(s) 340
AccI GTMKAC 2 cut(s) 5, 252
AciI CCGC 1 cut(s) 344
AclWI GGATC 2 cut(s) 219, 353
AcsI RAATTY 1 cut(s) 56
AcyI GRCGYC 3 cut(s) 150, 240, 255
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 2 cut(s) 146, 340
AgsI TTSAA 1 cut(s) 378
AluBI AGCT 4 cut(s) 28, 42, 262, 316
AluI AGCT 4 cut(s) 28, 42, 262, 316
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 2 cut(s) 86, 228
AlwI GGATC 2 cut(s) 219, 353
ApeKI GCWGC 2 cut(s) 120, 290
ApoI RAATTY 1 cut(s) 56
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
AspLEI GCGC 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 379
AxyI CCTNAGG 1 cut(s) 363
BanII GRGCYC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 44
BbvCI CCTCAGC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 107, 302
BccI CCATC 2 cut(s) 103, 104
BceAI ACGGC 1 cut(s) 133
BclI TGATCA 1 cut(s) 351
BcoDI GTCTC 2 cut(s) 86, 228
BisI GCNGC 2 cut(s) 121, 291
BlsI GCNGC 2 cut(s) 122, 292
BmcAI AGTACT 1 cut(s) 176
BoxI GACNNNNGTC 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 192
BpuEI CTTGAG 2 cut(s) 212, 367
BsaHI GRCGYC 3 cut(s) 150, 240, 255
BsaI GGTCTC 1 cut(s) 86
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 340
Bse118I RCCGGY 1 cut(s) 146
Bse21I CCTNAGG 1 cut(s) 363
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 2 cut(s) 146, 340
BseMII CTCAG 3 cut(s) 81, 183, 354
BseXI GCAGC 2 cut(s) 107, 302
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 2 cut(s) 146, 340
BsmAI GTCTC 2 cut(s) 86, 228
BsmFI GGGAC 1 cut(s) 335
Bso31I GGTCTC 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 5 cut(s) 211, 277, 295, 351, 358
BspACI CCGC 1 cut(s) 344
BspCNI CTCAG 3 cut(s) 82, 184, 355
BspPI GGATC 2 cut(s) 219, 353
BspQI GCTCTTC 1 cut(s) 87
BspTNI GGTCTC 1 cut(s) 86
BsrFI RCCGGY 1 cut(s) 146
BssAI RCCGGY 1 cut(s) 146
BssMI GATC 5 cut(s) 211, 277, 295, 351, 358
BssNI GRCGYC 3 cut(s) 150, 240, 255
Bst4CI ACNGT 1 cut(s) 340
Bst6I CTCTTC 1 cut(s) 87
BstACI GRCGYC 3 cut(s) 150, 240, 255
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 3 cut(s) 90, 192, 363
BstF5I GGATG 1 cut(s) 153
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 5 cut(s) 214, 280, 298, 354, 361
BstMAI GTCTC 2 cut(s) 86, 228
BstMBI GATC 5 cut(s) 211, 277, 295, 351, 358
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 333
BstPAI GACNNNNGTC 1 cut(s) 149
BstV1I GCAGC 2 cut(s) 107, 302
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
Bsu36I CCTNAGG 1 cut(s) 363
BtsCI GGATG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 189
CfoI GCGC 1 cut(s) 125
Cfr10I RCCGGY 1 cut(s) 146
CseI GACGC 2 cut(s) 139, 248
Csp6I GTAC 1 cut(s) 175
CviAII CATG 3 cut(s) 106, 330, 349
CviJI RGCY 6 cut(s) 28, 42, 74, 120, 262, 316
CviKI_1 RGCY 6 cut(s) 28, 42, 74, 120, 262, 316
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 3 cut(s) 90, 192, 363
DpnI GATC 5 cut(s) 213, 279, 297, 353, 360
DpnII GATC 5 cut(s) 211, 277, 295, 351, 358
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
EciI GGCGGA 1 cut(s) 359
Ecl136II GAGCTC 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 44
Eco31I GGTCTC 1 cut(s) 86
Eco53kI GAGCTC 1 cut(s) 42
Eco81I CCTNAGG 1 cut(s) 363
EcoICRI GAGCTC 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 44
FaeI CATG 3 cut(s) 109, 333, 352
FaiI YATR 3 cut(s) 107, 331, 350
FalI AAGNNNNNCTT 1 cut(s) 376
FaqI GGGAC 1 cut(s) 335
FatI CATG 3 cut(s) 105, 329, 348
FbaI TGATCA 1 cut(s) 351
FblI GTMKAC 2 cut(s) 5, 252
Fnu4HI GCNGC 2 cut(s) 121, 291
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 2 cut(s) 121, 291
GlaI GCGC 1 cut(s) 124
GluI GCNGC 2 cut(s) 121, 291
HapII CCGG 1 cut(s) 147
HgaI GACGC 2 cut(s) 139, 248
HhaI GCGC 1 cut(s) 125
Hin1I GRCGYC 3 cut(s) 150, 240, 255
Hin1II CATG 3 cut(s) 109, 333, 352
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HincII GTYRAC 2 cut(s) 6, 253
HindII GTYRAC 2 cut(s) 6, 253
HinfI GANTC 1 cut(s) 234
HpaII CCGG 1 cut(s) 147
HphI GGTGA 1 cut(s) 379
Hpy166II GTNNAC 2 cut(s) 6, 253
Hpy188I TCNGA 6 cut(s) 36, 46, 91, 216, 282, 303
Hpy188III TCNNGA 5 cut(s) 229, 271, 310, 362, 384
Hpy8I GTNNAC 2 cut(s) 6, 253
Hpy99I CGWCG 5 cut(s) 50, 242, 254, 257, 260
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4IV ACGT 1 cut(s) 255
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 3 cut(s) 90, 192, 363
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 3 cut(s) 150, 240, 255
Hsp92II CATG 3 cut(s) 109, 333, 352
HspAI GCGC 1 cut(s) 123
Ksp22I TGATCA 1 cut(s) 351
Kzo9I GATC 5 cut(s) 211, 277, 295, 351, 358
LguI GCTCTTC 1 cut(s) 87
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 4 cut(s) 160, 284, 347, 375
Lsp1109I GCAGC 2 cut(s) 107, 302
MaeII ACGT 1 cut(s) 255
MalI GATC 5 cut(s) 213, 279, 297, 353, 360
MboI GATC 5 cut(s) 211, 277, 295, 351, 358
MboII GAAGA 2 cut(s) 74, 229
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 2 cut(s) 12, 56
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 6 cut(s) 46, 55, 64, 106, 187, 358
MseI TTAA 2 cut(s) 179, 394
MspI CCGG 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 5 cut(s) 211, 277, 295, 351, 358
NlaIII CATG 3 cut(s) 109, 333, 352
NspI RCATGY 1 cut(s) 333
PciSI GCTCTTC 1 cut(s) 87
PcsI WCGNNNNNNNCGW 4 cut(s) 123, 246, 255, 264
PfeI GAWTC 1 cut(s) 234
PflMI CCANNNNNTGG 1 cut(s) 340
PkrI GCNGC 2 cut(s) 122, 292
PshAI GACNNNNGTC 1 cut(s) 149
Psp124BI GAGCTC 1 cut(s) 44
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SacI GAGCTC 1 cut(s) 44
SalI GTCGAC 2 cut(s) 4, 251
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 2 cut(s) 179, 394
SatI GCNGC 2 cut(s) 121, 291
Sau3AI GATC 5 cut(s) 211, 277, 295, 351, 358
ScaI AGTACT 1 cut(s) 176
SduI GDGCHC 1 cut(s) 44
SetI ASST 7 cut(s) 30, 44, 66, 258, 264, 318, 369
SgrDI CGTCGACG 1 cut(s) 251
SmlI CTYRAG 2 cut(s) 227, 382
SmoI CTYRAG 2 cut(s) 227, 382
Sse9I AATT 2 cut(s) 12, 56
SsiI CCGC 1 cut(s) 344
SstI GAGCTC 1 cut(s) 44
TaaI ACNGT 1 cut(s) 340
TaiI ACGT 1 cut(s) 258
TaqI TCGA 6 cut(s) 5, 60, 171, 237, 252, 258
TasI AATT 2 cut(s) 12, 56
TatI WGTACW 1 cut(s) 174
TfiI GAWTC 1 cut(s) 234
Tru1I TTAA 2 cut(s) 179, 394
Tru9I TTAA 2 cut(s) 179, 394
TseI GCWGC 2 cut(s) 120, 290
TspGWI ACGGA 2 cut(s) 63, 256
Van91I CCANNNNNTGG 1 cut(s) 340
XapI RAATTY 1 cut(s) 56
XceI RCATGY 1 cut(s) 333
XmiI GTMKAC 2 cut(s) 5, 252
ZraI GACGTC 1 cut(s) 256
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.