Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000457

Physical Location & Seq

Genomic Coordinates Reverse (-)

10948747 .. 10949626

Gene Structure 880 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G25700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCAGAAACGAAGAAGATGATCATCCTCAAGAGCTCCGACGGTGAATCCTTCGAGGTCGAGGAAGCCGTCGCGGTCGAGTCCCAGACGATTAAGCACATGATCGAGGACGACTGCGTCGATAACGGAATTCCACTTCCCAATGTCACCGGAGCCATCCTCGCGAAGGTTATCGAGTACTGCAAGAAACACGTTGAAGCCGCTGCTGAGGCTGGTGGAGACAAGGATTTCTATGGTTCCACCGAGAACCACGAGCTCAAGACTTGGGACAACGATTTCGTCAAAGTTGATCATCCTACTCTCTTCGATCTCCTTCGGGCTGCCAACTATTTGAACATCAGTGGACTTCTTGACCTTACGTGCAAGGCCGTGGCTGATCAGATGAGAGGCAAAACTCCAGCGCAGATGCGTGAACACTTCAACATCAAGAACGACTACACACCTGAGGAAGAGGCCGAGGTTCGCAATGAGAACAGGTGGGCGTTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0019005 GO:0019538 GO:0019941 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0051603 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

163

Amino Acids

18.36

Weight (kDa)

4.73

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	6 - 65	1.6e-30	Skp1 family, tetramerisation domain
Skp1	PF01466	115 - 161	2.5e-26	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca	FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica	MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica	Prupe.8G166100_v2.0.a1
pyrus_communis	pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis	RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata	RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora	Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa	Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha	Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana	Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	116
AccII	CGCG	2 cut(s)	74, 164
AciI	CCGC	2 cut(s)	74, 201
AcsI	RAATTY	1 cut(s)	129
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	166
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	3 cut(s)	197, 334, 421
AluBI	AGCT	2 cut(s)	36, 256
AluI	AGCT	2 cut(s)	36, 256
Alw21I	GWGCWC	2 cut(s)	38, 258
Alw26I	GTCTC	1 cut(s)	213
AoxI	GGCC	2 cut(s)	366, 453
ApeKI	GCWGC	2 cut(s)	203, 320
ApoI	RAATTY	1 cut(s)	129
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AspLEI	GCGC	1 cut(s)	403
AsuHPI	GGTGA	2 cut(s)	56, 139
AxyI	CCTNAGG	1 cut(s)	444
BanII	GRGCYC	2 cut(s)	38, 258
BauI	CACGAG	1 cut(s)	251
Bbv12I	GWGCWC	2 cut(s)	38, 258
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	190, 307
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	2 cut(s)	53, 353
BclI	TGATCA	3 cut(s)	21, 289, 376
BcoDI	GTCTC	1 cut(s)	213
BisI	GCNGC	3 cut(s)	201, 204, 321
BlsI	GCNGC	3 cut(s)	202, 205, 322
BmcAI	AGTACT	1 cut(s)	179
BmiI	GGNNCC	2 cut(s)	154, 238
BmsI	GCATC	1 cut(s)	396
BplI	GAGNNNNNCTC	2 cut(s)	144, 176
BpmI	CTGGAG	1 cut(s)	381
Bpu10I	CCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	2 cut(s)	14, 242
BsaAI	YACGTR	1 cut(s)	360
BsaBI	GATNNNNATC	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	369, 456
BsaWI	WCCGGW	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse21I	CCTNAGG	1 cut(s)	444
Bse3DI	GCAATG	1 cut(s)	472
Bse8I	GATNNNNATC	1 cut(s)	23
BseDI	CCNNGG	2 cut(s)	369, 456
BseGI	GGATG	3 cut(s)	24, 156, 292
BseJI	GATNNNNATC	1 cut(s)	23
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMI	GCAATG	1 cut(s)	472
BseMII	CTCAG	2 cut(s)	198, 435
BseXI	GCAGC	2 cut(s)	190, 307
Bsh1236I	CGCG	2 cut(s)	74, 164
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	368, 455
BsiEI	CGRYCG	1 cut(s)	78
BsiHKAI	GWGCWC	2 cut(s)	38, 258
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	2 cut(s)	67, 281
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	213
BsmFI	GGGAC	2 cut(s)	67, 281
BsnI	GGCC	2 cut(s)	368, 455
Bsp1286I	GDGCHC	2 cut(s)	38, 258
Bsp143I	GATC	5 cut(s)	21, 102, 289, 307, 376
Bsp68I	TCGCGA	1 cut(s)	164
BspACI	CCGC	2 cut(s)	74, 201
BspANI	GGCC	2 cut(s)	368, 455
BspCNI	CTCAG	2 cut(s)	199, 436
BspFNI	CGCG	2 cut(s)	74, 164
BspLI	GGNNCC	2 cut(s)	154, 238
BsrDI	GCAATG	1 cut(s)	472
BssECI	CCNNGG	2 cut(s)	369, 456
BssMI	GATC	5 cut(s)	21, 102, 289, 307, 376
BssSI	CACGAG	1 cut(s)	251
Bst2BI	CACGAG	1 cut(s)	251
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	2 cut(s)	308, 444
BstBAI	YACGTR	1 cut(s)	360
BstDEI	CTNAG	2 cut(s)	207, 444
BstDSI	CCRYGG	1 cut(s)	369
BstENI	CCTNNNNNAGG	1 cut(s)	164
BstF5I	GGATG	3 cut(s)	24, 156, 292
BstFNI	CGCG	2 cut(s)	74, 164
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	5 cut(s)	24, 105, 292, 310, 379
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	5 cut(s)	21, 102, 289, 307, 376
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 209
BstUI	CGCG	2 cut(s)	74, 164
BstV1I	GCAGC	2 cut(s)	190, 307
Bsu36I	CCTNAGG	1 cut(s)	444
BsuRI	GGCC	2 cut(s)	368, 455
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	3 cut(s)	24, 156, 292
BtsIMutI	CAGTG	1 cut(s)	346
BtuMI	TCGCGA	1 cut(s)	164
CfoI	GCGC	1 cut(s)	403
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	1 cut(s)	100
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	2 cut(s)	207, 444
DpnI	GATC	5 cut(s)	23, 104, 291, 309, 378
DpnII	GATC	5 cut(s)	21, 102, 289, 307, 376
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
Eam1104I	CTCTTC	2 cut(s)	308, 444
EarI	CTCTTC	2 cut(s)	308, 444
Ecl136II	GAGCTC	2 cut(s)	36, 256
Eco24I	GRGCYC	2 cut(s)	38, 258
Eco53kI	GAGCTC	2 cut(s)	36, 256
Eco81I	CCTNAGG	1 cut(s)	444
EcoICRI	GAGCTC	2 cut(s)	36, 256
EcoNI	CCTNNNNNAGG	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	129
EcoT38I	GRGCYC	2 cut(s)	38, 258
FaeI	CATG	1 cut(s)	103
FaiI	YATR	2 cut(s)	101, 234
FaqI	GGGAC	2 cut(s)	67, 281
FatI	CATG	1 cut(s)	99
FbaI	TGATCA	3 cut(s)	21, 289, 376
Fnu4HI	GCNGC	3 cut(s)	201, 204, 321
FokI	GGATG	3 cut(s)	11, 143, 279
FriOI	GRGCYC	2 cut(s)	38, 258
Fsp4HI	GCNGC	3 cut(s)	201, 204, 321
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	3 cut(s)	201, 204, 321
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	2 cut(s)	368, 455
HapII	CCGG	1 cut(s)	150
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	1 cut(s)	403
Hin1II	CATG	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HinfI	GANTC	2 cut(s)	47, 80
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	2 cut(s)	56, 139
Hpy166II	GTNNAC	2 cut(s)	344, 413
Hpy188I	TCNGA	2 cut(s)	40, 381
Hpy188III	TCNNGA	5 cut(s)	31, 163, 259, 350, 427
Hpy8I	GTNNAC	2 cut(s)	344, 413
Hpy99I	CGWCG	3 cut(s)	44, 74, 122
HpyAV	CCTTC	3 cut(s)	61, 160, 323
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	2 cut(s)	192, 359
HpyCH4V	TGCA	2 cut(s)	183, 363
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 209
HpyF3I	CTNAG	2 cut(s)	207, 444
HpySE526I	ACGT	2 cut(s)	192, 359
Hsp92II	CATG	1 cut(s)	103
HspAI	GCGC	1 cut(s)	401
Ksp22I	TGATCA	3 cut(s)	21, 289, 376
Kzo9I	GATC	5 cut(s)	21, 102, 289, 307, 376
LmnI	GCTCC	2 cut(s)	41, 152
LpnPI	CCDG	6 cut(s)	98, 163, 198, 411, 456, 460
Lsp1109I	GCAGC	2 cut(s)	190, 307
LweI	GCATC	1 cut(s)	396
MaeII	ACGT	2 cut(s)	192, 359
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	5 cut(s)	23, 104, 291, 309, 378
MboI	GATC	5 cut(s)	21, 102, 289, 307, 376
MboII	GAAGA	4 cut(s)	25, 28, 295, 461
MhlI	GDGCHC	2 cut(s)	38, 258
MluCI	AATT	1 cut(s)	129
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	1 cut(s)	63
MseI	TTAA	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	1 cut(s)	150
MvnI	CGCG	2 cut(s)	74, 164
MwoI	GCNNNNNNNGC	2 cut(s)	161, 209
NdeII	GATC	5 cut(s)	21, 102, 289, 307, 376
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	2 cut(s)	154, 238
NmeAIII	GCCGAG	1 cut(s)	481
NmuCI	GTSAC	1 cut(s)	145
NruI	TCGCGA	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 117
PfeI	GAWTC	1 cut(s)	47
PflFI	GACNNNGTC	1 cut(s)	116
PkrI	GCNGC	3 cut(s)	202, 205, 322
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
Ppu21I	YACGTR	1 cut(s)	360
Psp124BI	GAGCTC	2 cut(s)	38, 258
PspN4I	GGNNCC	2 cut(s)	154, 238
PsyI	GACNNNGTC	1 cut(s)	116
RruI	TCGCGA	1 cut(s)	164
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SacI	GAGCTC	2 cut(s)	38, 258
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	3 cut(s)	201, 204, 321
Sau3AI	GATC	5 cut(s)	21, 102, 289, 307, 376
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	1 cut(s)	89
SduI	GDGCHC	2 cut(s)	38, 258
SfaNI	GCATC	1 cut(s)	396
SmlI	CTYRAG	2 cut(s)	29, 257
SmoI	CTYRAG	2 cut(s)	29, 257
Sse9I	AATT	1 cut(s)	129
SsiI	CCGC	2 cut(s)	74, 201
SstI	GAGCTC	2 cut(s)	38, 258
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	2 cut(s)	195, 362
TaqI	TCGA	8 cut(s)	54, 60, 78, 105, 120, 174, 306, 486
TasI	AATT	1 cut(s)	129
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	346
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	2 cut(s)	203, 320
Tsp45I	GTSAC	1 cut(s)	145
TspGWI	ACGGA	1 cut(s)	141
TspRI	CASTG	1 cut(s)	346
Tth111I	GACNNNGTC	1 cut(s)	116
XagI	CCTNNNNNAGG	1 cut(s)	164
XapI	RAATTY	1 cut(s)	129
ZrmI	AGTACT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.