Rorug05G0509100

Belongs to the SKP1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
69247228 .. 69251298
4071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0509100.1

Sequence Viewer

Length: 2199 bp
ATGAACCCTTCTGAAGAACTAGTGGAACAAGGAATTTCTCCAAGGAACTTGCAGAGGGTATCTTGTGCAACTGTGCTCACATTGGCTTATCAAAGTCTGGGAGTCGTTTATGGAGACCTCAGCATATCCCCTCTATATGTTTACAAGACCACCTTCTCCGGAAAGTTGAGTCTTCATGAGGACGATGAAGAGATTTTCGGGGTGCTTTCATTTATTTTATGGACATTTACTCTCATTGCTCTCTTCAAGTATGTTTTCATTGTGATGTTGGCTGATGACAATGGTGAAGGTGGTACCTTTGCCTTATACTCCCTCCTCTGTCGTCATGCAAGATTAAGCATTCTACCTAATCAAGAAATCACAGATGAGGAACTGTCTGAACATGTGACAGAGGGAAACAAAGATACATGGTATAGTGCAGCTCTGAAATCATTCTTCGACAAGCACCCAAGATTTCAAAAAGGGCTACTGATTTTTGTTCTGTTTGGGACCTGTATGGCAATTGGTGATGGTGTACTCACTCCTTCAATATCAGTTCTTTCAGCAGTGTCAGGGGTAAAGCTTAAGTTCACAGAACTCCATGACAATTATGTTGTTATCATCTCATGTGTCTTGCTGGTGGGGCTTTTCTCCCTTCAGCATCACGGAACACACAGAGTGGCTTTCATGTTTGCTCCAATCATTACTGCATGGCTTCTGTGCATTAGTGGCATTGGAATATACAACATAGTTCAGTGGAATCAATGCGTATTTCAAGCACTCTCTCCAGTTTACATGTTGAAGTTCCTTCAAACGACAGGCATCGAAGGATGGCTATCGTTAGCTGGTGTTGTTCTTTCAATAACAGGTGTAGAGGCAATGTTTGCTAATTTGGGCCATTTCTCTTCACTCTCGATAAAGATAGCCTTCACATGTTTAGTATATCCCTCTCTTGTTCTTTCCTACATGGGTGAGGCTGCATTTCTTTCCAAGCACCATGAAGACATCCAAAGAAGTTTCTACAAATCCATACCAGAAGCTGTGTTTTGGCCGGTGTTCATACTCGCTAGTTTTGCATCTGTGGTAGGAAGCCAGGCAGTAATTTCAGCTACCTTCTCCATTATAAGCCAGTGTTCTGGGCTGAATTGCTTTCCACGCGTCAAGATAGTTCATACTTCGAGTAAAATATACGGGCAAATATACATTCCAGAAGTCAATTGGATGTTAATGTGCCTTTGTTTAGCTGTGACAATTGGATTGAGGGATACTAACATGATGGGTCATGCATATGGGTTGGCAGTGACCACTGTAATGTTTGTGACGACTTGCTTGATGGCTCTGGTGATGATAATTGTCTGGAAAGAAAGGGTAGTTAGTGCATTAGCATTTTTACTGTTCTTTGGATCAATTGAGTTGATTTATATTTCAGCATCTGTCACGAAGATCCCCGAAGGTGGATGGATCCCGGTTCTGCTGTCTCTTGTCTTTATGGCTATAATGTACACTTGGAACTACGGGACAATGATGAAACACCAATTTGATGTTGAGAACAAGGTCTCAATTAACCGAATAGTGTGCTTAGGGCCTAGCCTGGGCATGGTTCGTGTCTCCGGAATTGGACTTGTGTACACTAATTTGGTGACTGGGGTACCAGCTGTTTTCGGACACTTTGTCACTAATCTACCTGCTTTCCATAAGGTGCTGATTTTTGTTTGTGTCAAATCCGTTCAAGTTCCCCATGTTAGTGGAAAGGAAAGGTTGATCATTAGTAGGGTTGGCCCGAAGGAGTGTGGCATGTTCCGGTGCATTGTGAGGTATGGTTACAAGGATCTTCAACAGGAAAACTGTAATTTCGAGAATAGGTTGGTGTCTGGTATAGTGCAGTTTGTAGAAACAGAAGACTGTCCTGATGCTGAAGCCTTTTATGCCCCGGATGATCCGGATCAGACTTCCATGGAGTTGAAGAATGAAGAAAACACGATACAAGTTTCACGTAATCTTCAAGATGAGTCACTGCAGATATTAGAAGCCAAAGAATCTGGAGTGACTTATATTCTTGGGCATTCACATGCAAAGGCGAAGAAATCAGCATCCTTTATCAAGAAAGTTGCTATAGATATTGTGTATAATTTTCTGTGCAAGAATTGTAGAGAGCCTGATGTTGTGTTGAATGTGCCTCCTACTTCTTTGCTAGAAGTAGGTATGGTTTACTATGTTTAA

Protein Analysis

732

Amino Acids

81.33

Weight (kDa)

6.11

Isoelectric Point (pI)

30.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K_trans PF02705 28 - 517 9.7e-162 K+ potassium transporter integral membrane domain
K_trans_C PF22776 530 - 730 2.5e-25 K+ potassium transporter C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1103
Acc36I ACCTGC 1 cut(s) 1672
Acc65I GGTACC 2 cut(s) 293, 1627
AccB1I GGYRCC 2 cut(s) 293, 1627
AccII CGCG 1 cut(s) 1137
AccIII TCCGGA 3 cut(s) 158, 1589, 1918
AclWI GGATC 7 cut(s) 1390, 1417, 1435, 1448, 1815, 1910, 1929
AcoI YGGCCR 1 cut(s) 1028
AcsI RAATTY 1 cut(s) 33
AcuI CTGAAG 3 cut(s) 33, 620, 1914
AdeI CACNNNGTG 1 cut(s) 658
AfaI GTAC 5 cut(s) 295, 516, 1481, 1607, 1629
AfiI CCNNNNNNNGG 3 cut(s) 1433, 1571, 1576
AflII CTTAAG 1 cut(s) 563
AflIII ACRYGT 4 cut(s) 382, 774, 911, 1135
AhdI GACNNNNNGTC 1 cut(s) 1649
AhlI ACTAGT 1 cut(s) 19
AjnI CCWGG 2 cut(s) 1071, 1569
AluBI AGCT 7 cut(s) 422, 562, 824, 1019, 1088, 1223, 1634
AluI AGCT 7 cut(s) 422, 562, 824, 1019, 1088, 1223, 1634
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 4 cut(s) 108, 1461, 1540, 1591
AlwI GGATC 7 cut(s) 1390, 1417, 1435, 1448, 1815, 1910, 1929
AlwNI CAGNNNCTG 2 cut(s) 1019, 1412
Aor13HI TCCGGA 3 cut(s) 158, 1589, 1918
AoxI GGCC 4 cut(s) 874, 1028, 1562, 1756
ApeKI GCWGC 2 cut(s) 419, 956
ApoI RAATTY 1 cut(s) 33
Asp700I GAANNNNTTC 1 cut(s) 431
Asp718I GGTACC 2 cut(s) 293, 1627
AspS9I GGNCC 4 cut(s) 489, 874, 1562, 1757
AsuC2I CCSGG 2 cut(s) 1445, 1910
AsuHPI GGTGA 5 cut(s) 296, 518, 962, 1333, 1630
AvaII GGWCC 1 cut(s) 489
BaeI ACNNNNGTAYC 2 cut(s) 1611, 1644
BamHI GGATCC 1 cut(s) 1440
BanI GGYRCC 2 cut(s) 293, 1627
BbsI GAAGAC 3 cut(s) 164, 987, 1884
Bbv12I GWGCWC 1 cut(s) 78
BbvCI CCTCAGC 1 cut(s) 119
BbvI GCAGC 2 cut(s) 431, 943
BccI CCATC 5 cut(s) 503, 804, 1249, 1306, 1431
BcgI CGANNNNNNTGC 2 cut(s) 1536, 1570
BciT130I CCWGG 2 cut(s) 1073, 1571
BciVI GTATCC 1 cut(s) 1237
BclI TGATCA 1 cut(s) 1740
BcnI CCSGG 2 cut(s) 1445, 1910
BcoDI GTCTC 4 cut(s) 108, 1461, 1540, 1591
BcuI ACTAGT 1 cut(s) 19
BfaI CTAG 4 cut(s) 20, 1047, 1566, 2171
BfmI CTRYAG 2 cut(s) 1994, 2091
BfrI CTTAAG 1 cut(s) 563
BfuAI ACCTGC 1 cut(s) 1672
BfuI GTATCC 1 cut(s) 1237
BisI GCNGC 2 cut(s) 420, 957
BlsI GCNGC 2 cut(s) 421, 958
Bme1390I CCNGG 4 cut(s) 1073, 1445, 1571, 1910
Bme18I GGWCC 1 cut(s) 489
BmeRI GACNNNNNGTC 1 cut(s) 1649
BmgT120I GGNCC 4 cut(s) 489, 874, 1562, 1757
BmiI GGNNCC 4 cut(s) 295, 490, 1442, 1629
BmrFI CCNGG 4 cut(s) 1073, 1445, 1571, 1910
BmrI ACTGGG 1 cut(s) 1632
BmsI GCATC 6 cut(s) 649, 810, 1064, 1418, 1879, 2078
BmuI ACTGGG 1 cut(s) 1632
BpiI GAAGAC 3 cut(s) 164, 987, 1884
BpmI CTGGAG 2 cut(s) 750, 2040
Bpu10I CCTNAGC 2 cut(s) 119, 1558
BpuMI CCSGG 2 cut(s) 1445, 1910
BsaAI YACGTR 1 cut(s) 1973
BsaBI GATNNNNATC 2 cut(s) 814, 1920
BsaI GGTCTC 2 cut(s) 108, 1540
BsaJI CCNNGG 4 cut(s) 41, 1570, 1908, 1932
BsaWI WCCGGW 4 cut(s) 158, 1589, 1779, 1918
Bsc4I CCNNNNNNNGG 3 cut(s) 1433, 1571, 1576
Bse118I RCCGGY 1 cut(s) 1030
Bse1I ACTGG 3 cut(s) 767, 1108, 1627
Bse3DI GCAATG 2 cut(s) 234, 864
Bse8I GATNNNNATC 2 cut(s) 814, 1920
BseAI TCCGGA 3 cut(s) 158, 1589, 1918
BseBI CCWGG 2 cut(s) 1073, 1571
BseDI CCNNGG 4 cut(s) 41, 1570, 1908, 1932
BseGI GGATG 6 cut(s) 815, 984, 1206, 1442, 1918, 2069
BseJI GATNNNNATC 2 cut(s) 814, 1920
BseLI CCNNNNNNNGG 3 cut(s) 1433, 1571, 1576
BseMI GCAATG 2 cut(s) 234, 864
BseMII CTCAG 1 cut(s) 133
BseNI ACTGG 3 cut(s) 767, 1108, 1627
BseRI GAGGAG 1 cut(s) 305
BseXI GCAGC 2 cut(s) 431, 943
BsgI GTGCAG 2 cut(s) 438, 1880
Bsh1236I CGCG 1 cut(s) 1137
BshFI GGCC 4 cut(s) 876, 1030, 1564, 1758
BshNI GGYRCC 2 cut(s) 293, 1627
BsiHKAI GWGCWC 1 cut(s) 78
BsiSI CCGG 7 cut(s) 159, 1031, 1445, 1590, 1780, 1910, 1919
BslFI GGGAC 2 cut(s) 502, 1510
BslI CCNNNNNNNGG 3 cut(s) 1433, 1571, 1576
BsmAI GTCTC 4 cut(s) 108, 1461, 1540, 1591
BsmFI GGGAC 2 cut(s) 502, 1510
BsmI GAATGC 2 cut(s) 339, 2041
BsnI GGCC 4 cut(s) 876, 1030, 1564, 1758
Bso31I GGTCTC 2 cut(s) 108, 1540
Bsp1286I GDGCHC 1 cut(s) 78
Bsp13I TCCGGA 3 cut(s) 158, 1589, 1918
Bsp1407I TGTACA 2 cut(s) 1479, 1605
Bsp143I GATC 7 cut(s) 1382, 1422, 1440, 1740, 1807, 1915, 1921
Bsp19I CCATGG 1 cut(s) 1932
BspANI GGCC 4 cut(s) 876, 1030, 1564, 1758
BspCNI CTCAG 1 cut(s) 132
BspEI TCCGGA 3 cut(s) 158, 1589, 1918
BspFNI CGCG 1 cut(s) 1137
BspHI TCATGA 1 cut(s) 175
BspLI GGNNCC 4 cut(s) 295, 490, 1442, 1629
BspMAI CTGCAG 1 cut(s) 1998
BspMI ACCTGC 1 cut(s) 1672
BspPI GGATC 7 cut(s) 1390, 1417, 1435, 1448, 1815, 1910, 1929
BspT107I GGYRCC 2 cut(s) 293, 1627
BspTI CTTAAG 1 cut(s) 563
BspTNI GGTCTC 2 cut(s) 108, 1540
BsrDI GCAATG 2 cut(s) 234, 864
BsrFI RCCGGY 1 cut(s) 1030
BsrGI TGTACA 2 cut(s) 1479, 1605
BsrI ACTGG 3 cut(s) 767, 1108, 1627
BssAI RCCGGY 1 cut(s) 1030
BssECI CCNNGG 4 cut(s) 41, 1570, 1908, 1932
BssMI GATC 7 cut(s) 1382, 1422, 1440, 1740, 1807, 1915, 1921
BssT1I CCWWGG 2 cut(s) 41, 1932
Bst2UI CCWGG 2 cut(s) 1073, 1571
Bst4CI ACNGT 6 cut(s) 73, 375, 1288, 1374, 1826, 1883
Bst6I CTCTTC 3 cut(s) 183, 248, 889
BstAFI CTTAAG 1 cut(s) 563
BstAPI GCANNNNNTGC 1 cut(s) 863
BstAUI TGTACA 2 cut(s) 1479, 1605
BstBAI YACGTR 1 cut(s) 1973
BstDEI CTNAG 2 cut(s) 119, 1558
BstDSI CCRYGG 1 cut(s) 1932
BstF5I GGATG 6 cut(s) 815, 984, 1206, 1442, 1918, 2069
BstFNI CGCG 1 cut(s) 1137
BstKTI GATC 7 cut(s) 1385, 1425, 1443, 1743, 1810, 1918, 1924
BstMAI GTCTC 4 cut(s) 108, 1461, 1540, 1591
BstMBI GATC 7 cut(s) 1382, 1422, 1440, 1740, 1807, 1915, 1921
BstMWI GCNNNNNNNGC 6 cut(s) 622, 708, 863, 1052, 1134, 1904
BstNI CCWGG 2 cut(s) 1073, 1571
BstNSI RCATGY 5 cut(s) 386, 778, 915, 1777, 2051
BstSCI CCNGG 4 cut(s) 1071, 1443, 1569, 1908
BstSFI CTRYAG 2 cut(s) 1994, 2091
BstUI CGCG 1 cut(s) 1137
BstV1I GCAGC 2 cut(s) 431, 943
BstV2I GAAGAC 3 cut(s) 164, 987, 1884
BstX2I RGATCY 3 cut(s) 1422, 1440, 1807
BstXI CCANNNNNNTGG 2 cut(s) 1115, 1724
BstYI RGATCY 3 cut(s) 1422, 1440, 1807
BsuI GTATCC 1 cut(s) 1237
BsuRI GGCC 4 cut(s) 876, 1030, 1564, 1758
BtgI CCRYGG 1 cut(s) 1932
BtsCI GGATG 6 cut(s) 815, 984, 1206, 1442, 1918, 2069
BtsI GCAGTG 3 cut(s) 552, 1284, 1991
BtsIMutI CAGTG 6 cut(s) 552, 740, 1115, 1284, 1284, 1991
BveI ACCTGC 1 cut(s) 1672
CaiI CAGNNNCTG 2 cut(s) 1019, 1412
CciI TCATGA 1 cut(s) 175
Cfr10I RCCGGY 1 cut(s) 1030
Cfr13I GGNCC 4 cut(s) 489, 874, 1562, 1757
CseI GACGC 1 cut(s) 1126
Csp6I GTAC 5 cut(s) 294, 515, 1480, 1606, 1628
CviQI GTAC 5 cut(s) 294, 515, 1480, 1606, 1628
DdeI CTNAG 2 cut(s) 119, 1558
DpnI GATC 7 cut(s) 1384, 1424, 1442, 1742, 1809, 1917, 1923
DpnII GATC 7 cut(s) 1382, 1422, 1440, 1740, 1807, 1915, 1921
DraIII CACNNNGTG 1 cut(s) 658
DriI GACNNNNNGTC 1 cut(s) 1649
EaeI YGGCCR 1 cut(s) 1028
Eam1104I CTCTTC 3 cut(s) 183, 248, 889
Eam1105I GACNNNNNGTC 1 cut(s) 1649
EarI CTCTTC 3 cut(s) 183, 248, 889
Eco130I CCWWGG 2 cut(s) 41, 1932
Eco31I GGTCTC 2 cut(s) 108, 1540
Eco47I GGWCC 1 cut(s) 489
Eco57I CTGAAG 3 cut(s) 33, 620, 1914
EcoO109I RGGNCCY 2 cut(s) 489, 1562
EcoRII CCWGG 2 cut(s) 1071, 1569
EcoT14I CCWWGG 2 cut(s) 41, 1932
EcoT22I ATGCAT 1 cut(s) 1267
ErhI CCWWGG 2 cut(s) 41, 1932
FalI AAGNNNNNCTT 4 cut(s) 137, 169, 890, 922
FaqI GGGAC 2 cut(s) 502, 1510
FauNDI CATATG 1 cut(s) 1267
FbaI TGATCA 1 cut(s) 1740
Fnu4HI GCNGC 2 cut(s) 420, 957
FokI GGATG 6 cut(s) 822, 971, 1213, 1449, 1925, 2056
Fsp4HI GCNGC 2 cut(s) 420, 957
FspBI CTAG 4 cut(s) 20, 1047, 1566, 2171
GluI GCNGC 2 cut(s) 420, 957
GsuI CTGGAG 2 cut(s) 750, 2040
HaeIII GGCC 4 cut(s) 876, 1030, 1564, 1758
HapII CCGG 7 cut(s) 159, 1031, 1445, 1590, 1780, 1910, 1919
HgaI GACGC 1 cut(s) 1126
HindIII AAGCTT 1 cut(s) 560
HinfI GANTC 5 cut(s) 102, 169, 739, 1988, 2015
HpaII CCGG 7 cut(s) 159, 1031, 1445, 1590, 1780, 1910, 1919
HphI GGTGA 5 cut(s) 296, 518, 962, 1333, 1630
Hpy166II GTNNAC 8 cut(s) 142, 515, 570, 772, 1482, 1606, 1608, 2188
Hpy188I TCNGA 5 cut(s) 13, 379, 426, 1643, 1926
Hpy8I GTNNAC 8 cut(s) 142, 515, 570, 772, 1482, 1606, 1608, 2188
HpyCH4III ACNGT 6 cut(s) 73, 375, 1288, 1374, 1826, 1883
HpyCH4IV ACGT 1 cut(s) 1972
HpyF10VI GCNNNNNNNGC 6 cut(s) 622, 708, 863, 1052, 1134, 1904
HpyF3I CTNAG 2 cut(s) 119, 1558
HpySE526I ACGT 1 cut(s) 1972
Kpn2I TCCGGA 3 cut(s) 158, 1589, 1918
KpnI GGTACC 2 cut(s) 297, 1631
Ksp22I TGATCA 1 cut(s) 1740
Kzo9I GATC 7 cut(s) 1382, 1422, 1440, 1740, 1807, 1915, 1921
LmnI GCTCC 1 cut(s) 679
Lsp1109I GCAGC 2 cut(s) 431, 943
LweI GCATC 6 cut(s) 649, 810, 1064, 1418, 1879, 2078
MaeI CTAG 4 cut(s) 20, 1047, 1566, 2171
MaeII ACGT 1 cut(s) 1972
MalI GATC 7 cut(s) 1384, 1424, 1442, 1742, 1809, 1917, 1923
MboI GATC 7 cut(s) 1382, 1422, 1440, 1740, 1807, 1915, 1921
MfeI CAATTG 4 cut(s) 501, 1195, 1230, 1386
MflI RGATCY 3 cut(s) 1422, 1440, 1807
MhlI GDGCHC 1 cut(s) 78
MluI ACGCGT 1 cut(s) 1135
MlyI GAGTC 3 cut(s) 111, 178, 1997
Mph1103I ATGCAT 1 cut(s) 1267
MroI TCCGGA 3 cut(s) 158, 1589, 1918
MroXI GAANNNNTTC 1 cut(s) 431
MseI TTAA 5 cut(s) 335, 564, 1205, 1542, 2197
MslI CAYNNNNRTG 5 cut(s) 263, 1266, 1289, 1722, 2046
MspA1I CMGCKG 1 cut(s) 1634
MspCI CTTAAG 1 cut(s) 563
MspI CCGG 7 cut(s) 159, 1031, 1445, 1590, 1780, 1910, 1919
MspR9I CCNGG 4 cut(s) 1073, 1445, 1571, 1910
MunI CAATTG 4 cut(s) 501, 1195, 1230, 1386
Mva1269I GAATGC 2 cut(s) 339, 2041
MvaI CCWGG 2 cut(s) 1073, 1571
MvnI CGCG 1 cut(s) 1137
MwoI GCNNNNNNNGC 6 cut(s) 622, 708, 863, 1052, 1134, 1904
NciI CCSGG 2 cut(s) 1445, 1910
NcoI CCATGG 1 cut(s) 1932
NdeI CATATG 1 cut(s) 1267
NdeII GATC 7 cut(s) 1382, 1422, 1440, 1740, 1807, 1915, 1921
NlaIV GGNNCC 4 cut(s) 295, 490, 1442, 1629
NmuCI GTSAC 9 cut(s) 385, 1225, 1279, 1297, 1414, 1618, 1651, 1989, 2023
NsiI ATGCAT 1 cut(s) 1267
NspI RCATGY 5 cut(s) 386, 778, 915, 1777, 2051
PagI TCATGA 1 cut(s) 175
PciI ACATGT 3 cut(s) 382, 774, 911
PctI GAATGC 2 cut(s) 339, 2041
PdmI GAANNNNTTC 1 cut(s) 431
PfeI GAWTC 2 cut(s) 739, 2015
PkrI GCNGC 2 cut(s) 421, 958
PleI GAGTC 3 cut(s) 110, 177, 1996
PpsI GAGTC 3 cut(s) 110, 177, 1996
Ppu21I YACGTR 1 cut(s) 1973
PpuMI RGGWCCY 1 cut(s) 489
PscI ACATGT 3 cut(s) 382, 774, 911
PsiI TTATAA 1 cut(s) 1103
Psp5II RGGWCCY 1 cut(s) 489
Psp6I CCWGG 2 cut(s) 1071, 1569
PspGI CCWGG 2 cut(s) 1071, 1569
PspN4I GGNNCC 4 cut(s) 295, 490, 1442, 1629
PspPI GGNCC 4 cut(s) 489, 874, 1562, 1757
PspPPI RGGWCCY 1 cut(s) 489
PstI CTGCAG 1 cut(s) 1998
PstNI CAGNNNCTG 2 cut(s) 1019, 1412
PsuI RGATCY 3 cut(s) 1422, 1440, 1807
PvuII CAGCTG 1 cut(s) 1634
RsaI GTAC 5 cut(s) 295, 516, 1481, 1607, 1629
RsaNI GTAC 5 cut(s) 294, 515, 1480, 1606, 1628
RseI CAYNNNNRTG 5 cut(s) 263, 1266, 1289, 1722, 2046
SaqAI TTAA 5 cut(s) 335, 564, 1205, 1542, 2197
SatI GCNGC 2 cut(s) 420, 957
Sau3AI GATC 7 cut(s) 1382, 1422, 1440, 1740, 1807, 1915, 1921
Sau96I GGNCC 4 cut(s) 489, 874, 1562, 1757
SchI GAGTC 3 cut(s) 111, 178, 1997
ScrFI CCNGG 4 cut(s) 1073, 1445, 1571, 1910
SduI GDGCHC 1 cut(s) 78
SfaNI GCATC 6 cut(s) 649, 810, 1064, 1418, 1879, 2078
SfcI CTRYAG 2 cut(s) 1994, 2091
SinI GGWCC 1 cut(s) 489
SmiMI CAYNNNNRTG 5 cut(s) 263, 1266, 1289, 1722, 2046
SmlI CTYRAG 1 cut(s) 563
SmoI CTYRAG 1 cut(s) 563
SpeI ACTAGT 1 cut(s) 19
SspMI CTAG 4 cut(s) 20, 1047, 1566, 2171
StyD4I CCNGG 4 cut(s) 1071, 1443, 1569, 1908
StyI CCWWGG 2 cut(s) 41, 1932
TaaI ACNGT 6 cut(s) 73, 375, 1288, 1374, 1826, 1883
TaiI ACGT 1 cut(s) 1975
TaqI TCGA 5 cut(s) 438, 804, 893, 1157, 1833
TatI WGTACW 3 cut(s) 514, 1479, 1605
TfiI GAWTC 2 cut(s) 739, 2015
Tru1I TTAA 5 cut(s) 335, 564, 1205, 1542, 2197
Tru9I TTAA 5 cut(s) 335, 564, 1205, 1542, 2197
TscAI CASTG 6 cut(s) 552, 740, 1115, 1284, 1291, 1998
TseFI GTSAC 9 cut(s) 385, 1225, 1279, 1297, 1414, 1618, 1651, 1989, 2023
TseI GCWGC 2 cut(s) 419, 956
Tsp45I GTSAC 9 cut(s) 385, 1225, 1279, 1297, 1414, 1618, 1651, 1989, 2023
TspGWI ACGGA 2 cut(s) 660, 1693
TspRI CASTG 6 cut(s) 552, 740, 1115, 1284, 1291, 1998
Vha464I CTTAAG 1 cut(s) 563
VpaK11BI GGWCC 1 cut(s) 489
XapI RAATTY 1 cut(s) 33
XceI RCATGY 5 cut(s) 386, 778, 915, 1777, 2051
XcmI CCANNNNNNNNNTGG 1 cut(s) 1194
XmnI GAANNNNTTC 1 cut(s) 431
XspI CTAG 4 cut(s) 20, 1047, 1566, 2171
Zsp2I ATGCAT 1 cut(s) 1267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.