RLG00000015365

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000457
Physical Location & Seq
Reverse (-)
65062243 .. 65062726
484 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015365

Sequence Viewer

Length: 393 bp
ATGTCAACTGAAATTGAGAACAAGAAGCTAACCCTGAAAAGCTCCGACGGAGAGGAATTCGAGATTGATGAGGCTGTTGCTCTTCAGTCTCAGACCATCAAGCAAATGGTGGAGGATGGCTCCGCTGACAATGCAATCCCATTGCCCCAAGTCACCGGCGAGAAGTCTCTCAAGAAGTTCGACGCCGATTTCGTCAAAGTCGAGCAGTCCGTCCTGTTTGATCTTATATTGGCAGCAAAGTATCTGAACATCAACAAGCTGCTGGACTTGACATGCCAGACTGTGGCGGACATGATCAAAGTACAGTCTCCCGAGACGATTCGTCACGTTTTCAACATCAAGAATCACTTCACTTTTGAACAAGAAGAGGTCATCCGAAAGGAATACCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

131

Amino Acids

14.82

Weight (kDa)

4.76

Isoelectric Point (pI)

60.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 8 - 53 5.8e-17 Skp1 family, tetramerisation domain
Skp1 PF01466 86 - 130 5.7e-19 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 283
AciI CCGC 2 cut(s) 123, 287
AcsI RAATTY 1 cut(s) 56
AcuI CTGAAG 1 cut(s) 68
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 1 cut(s) 303
AfiI CCNNNNNNNGG 1 cut(s) 283
AgsI TTSAA 2 cut(s) 334, 359
AhdI GACNNNNNGTC 1 cut(s) 321
AluBI AGCT 3 cut(s) 28, 42, 259
AluI AGCT 3 cut(s) 28, 42, 259
Alw26I GTCTC 4 cut(s) 93, 171, 308, 312
Ama87I CYCGRG 1 cut(s) 311
ApeKI GCWGC 2 cut(s) 233, 259
ApoI RAATTY 1 cut(s) 56
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
Asp700I GAANNNNTTC 1 cut(s) 347
AsuHPI GGTGA 1 cut(s) 145
AvaI CYCGRG 1 cut(s) 311
BbvI GCAGC 2 cut(s) 245, 246
BccI CCATC 2 cut(s) 104, 110
BclI TGATCA 1 cut(s) 294
BcoDI GTCTC 4 cut(s) 93, 171, 308, 312
BisI GCNGC 2 cut(s) 234, 260
BlsI GCNGC 2 cut(s) 235, 261
BmeRI GACNNNNNGTC 1 cut(s) 321
BmeT110I CYCGRG 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 121
BplI GAGNNNNNCTC 2 cut(s) 104, 136
BpuEI CTTGAG 1 cut(s) 155
BsaHI GRCGYC 1 cut(s) 183
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse118I RCCGGY 1 cut(s) 155
Bse3DI GCAATG 1 cut(s) 140
BseGI GGATG 2 cut(s) 121, 372
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMI GCAATG 1 cut(s) 140
BseMII CTCAG 1 cut(s) 104
BseXI GCAGC 2 cut(s) 245, 246
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 283
BsmAI GTCTC 4 cut(s) 93, 171, 308, 312
BsmBI CGTCTC 1 cut(s) 308
BsoBI CYCGRG 1 cut(s) 311
Bsp143I GATC 2 cut(s) 220, 294
BspACI CCGC 2 cut(s) 123, 287
BspCNI CTCAG 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 121
BspQI GCTCTTC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 140
BsrFI RCCGGY 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 155
BssMI GATC 2 cut(s) 220, 294
BssNI GRCGYC 1 cut(s) 183
Bst4CI ACNGT 2 cut(s) 283, 306
Bst6I CTCTTC 2 cut(s) 87, 360
BstACI GRCGYC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 90
BstF5I GGATG 2 cut(s) 121, 372
BstKTI GATC 2 cut(s) 223, 297
BstMAI GTCTC 4 cut(s) 93, 171, 308, 312
BstMBI GATC 2 cut(s) 220, 294
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 276
BstV1I GCAGC 2 cut(s) 245, 246
BtsCI GGATG 2 cut(s) 121, 372
Cfr10I RCCGGY 1 cut(s) 155
CseI GACGC 1 cut(s) 191
Csp6I GTAC 1 cut(s) 302
CviAII CATG 2 cut(s) 273, 292
CviJI RGCY 5 cut(s) 28, 42, 74, 120, 259
CviKI_1 RGCY 5 cut(s) 28, 42, 74, 120, 259
CviQI GTAC 1 cut(s) 302
DdeI CTNAG 1 cut(s) 90
DpnI GATC 2 cut(s) 222, 296
DpnII GATC 2 cut(s) 220, 294
DriI GACNNNNNGTC 1 cut(s) 321
Eam1104I CTCTTC 2 cut(s) 87, 360
Eam1105I GACNNNNNGTC 1 cut(s) 321
EarI CTCTTC 2 cut(s) 87, 360
EciI GGCGGA 1 cut(s) 302
Eco57I CTGAAG 1 cut(s) 68
Eco88I CYCGRG 1 cut(s) 311
EcoRI GAATTC 1 cut(s) 56
Esp3I CGTCTC 1 cut(s) 308
FaeI CATG 2 cut(s) 276, 295
FaiI YATR 3 cut(s) 227, 274, 293
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FatI CATG 2 cut(s) 272, 291
FbaI TGATCA 1 cut(s) 294
Fnu4HI GCNGC 2 cut(s) 234, 260
FokI GGATG 2 cut(s) 128, 359
Fsp4HI GCNGC 2 cut(s) 234, 260
GluI GCNGC 2 cut(s) 234, 260
HapII CCGG 1 cut(s) 156
HgaI GACGC 1 cut(s) 191
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 2 cut(s) 276, 295
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 319, 343
HpaII CCGG 1 cut(s) 156
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 4 cut(s) 46, 93, 246, 377
Hpy188III TCNNGA 4 cut(s) 61, 172, 311, 340
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 2 cut(s) 50, 185
HpyCH4III ACNGT 2 cut(s) 283, 306
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 90
HpySE526I ACGT 1 cut(s) 327
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 2 cut(s) 276, 295
Ksp22I TGATCA 1 cut(s) 294
Kzo9I GATC 2 cut(s) 220, 294
LguI GCTCTTC 1 cut(s) 87
LmnI GCTCC 2 cut(s) 47, 125
LpnPI CCDG 5 cut(s) 47, 169, 227, 248, 290
Lsp1109I GCAGC 2 cut(s) 245, 246
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 2 cut(s) 151, 323
MalI GATC 2 cut(s) 222, 296
MboI GATC 2 cut(s) 220, 294
MboII GAAGA 2 cut(s) 74, 377
MluCI AATT 2 cut(s) 12, 56
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 4 cut(s) 46, 64, 106, 361
MroXI GAANNNNTTC 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 2 cut(s) 220, 294
NlaIII CATG 2 cut(s) 276, 295
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 151, 323
NspI RCATGY 1 cut(s) 276
PciSI GCTCTTC 1 cut(s) 87
PcsI WCGNNNNNNNCGW 3 cut(s) 189, 198, 207
PdmI GAANNNNTTC 1 cut(s) 347
PfeI GAWTC 2 cut(s) 319, 343
PflMI CCANNNNNTGG 1 cut(s) 283
PkrI GCNGC 2 cut(s) 235, 261
PspN4I GGNNCC 1 cut(s) 121
RsaI GTAC 1 cut(s) 303
RsaNI GTAC 1 cut(s) 302
SapI GCTCTTC 1 cut(s) 87
SatI GCNGC 2 cut(s) 234, 260
Sau3AI GATC 2 cut(s) 220, 294
SetI ASST 5 cut(s) 30, 44, 261, 330, 372
SgrAI CRCCGGYG 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 2 cut(s) 12, 56
SsiI CCGC 2 cut(s) 123, 287
TaaI ACNGT 2 cut(s) 283, 306
TaiI ACGT 1 cut(s) 330
TaqI TCGA 3 cut(s) 60, 180, 201
TasI AATT 2 cut(s) 12, 56
TatI WGTACW 1 cut(s) 301
TfiI GAWTC 2 cut(s) 319, 343
TseFI GTSAC 2 cut(s) 151, 323
TseI GCWGC 2 cut(s) 233, 259
Tsp45I GTSAC 2 cut(s) 151, 323
TspGWI ACGGA 2 cut(s) 63, 199
Van91I CCANNNNNTGG 1 cut(s) 283
XapI RAATTY 1 cut(s) 56
XceI RCATGY 1 cut(s) 276
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XmnI GAANNNNTTC 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.