Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000457

Physical Location & Seq

Genomic Coordinates Reverse (-)

3203116 .. 3208764

Gene Structure 5649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G001970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTCGACTGAACTTCGGAACAAGAAGCTAACCCTGACCAGCTGCGACGGAGCTGATTTCGAGATTAGAGAGGCGGTTGCCCTTGAATCGCAGACCATCAAGCACATGGTGGAGGACGGCTGCGCCGATAATGCGATCCCCTTGCCGAACGTCTCCAGCAGCATCCTAGCCAAGGTCATCGAGTACTGCAACAGGCACGTTGAGGACAAGGAAAGCAAGAATGAAGACAATAAGAATGATAAGGAGGAGTATCTCAAGAAATTCGACGCAGACAAGAATGAAGACAATAAGAATGATCAGGAGGAGTATCTCAAGAAATTCGACGCAGAGTTCATGAAAGTCGACCAGGGCGTCCTGTTCGACCTGATATTGGCAGCAAACTATCTGAACATAAAGGGGCTGCTGGACTTGACATGCCAGACTGTGGCAGACATGATAAAGGGAAAGACTCCCGAAGAGATTCGCACGACTTTCAACATCAAGAATGACTTCACTCCTGAGGAAGAAGAGGAGGTTCGAAGGGAGAACCAATGGGCTTTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

181

Amino Acids

20.88

Weight (kDa)

4.59

Isoelectric Point (pI)

54.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	8 - 67	1.7e-26	Skp1 family, tetramerisation domain
Skp1	PF01466	132 - 179	2.4e-31	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca	FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica	MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica	Prupe.8G166100_v2.0.a1
pyrus_communis	pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis	RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata	RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora	Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa	Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha	Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana	Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	350
AccB7I	CCANNNNNTGG	1 cut(s)	424
AccI	GTMKAC	2 cut(s)	5, 342
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	1 cut(s)	130
AcsI	RAATTY	2 cut(s)	260, 317
AcyI	GRCGYC	1 cut(s)	351
AdeI	CACNNNGTG	1 cut(s)	109
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	3 cut(s)	172, 370, 424
AgsI	TTSAA	2 cut(s)	86, 475
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	3 cut(s)	28, 42, 53
AluI	AGCT	3 cut(s)	28, 42, 53
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	1 cut(s)	130
ApeKI	GCWGC	5 cut(s)	42, 120, 159, 374, 400
ApoI	RAATTY	2 cut(s)	260, 317
Asp700I	GAANNNNTTC	2 cut(s)	459, 488
AspLEI	GCGC	1 cut(s)	125
AsuII	TTCGAA	1 cut(s)	517
AxyI	CCTNAGG	1 cut(s)	498
BbsI	GAAGAC	2 cut(s)	231, 288
BbvI	GCAGC	5 cut(s)	29, 107, 171, 386, 387
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	1 cut(s)	133
BcgI	CGANNNNNNTGC	2 cut(s)	124, 158
BciT130I	CCWGG	1 cut(s)	347
BclI	TGATCA	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	167
BisI	GCNGC	5 cut(s)	43, 121, 160, 375, 401
BlsI	GCNGC	5 cut(s)	44, 122, 161, 376, 402
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	347
BmrFI	CCNGG	1 cut(s)	347
BmsI	GCATC	1 cut(s)	171
BpiI	GAAGAC	2 cut(s)	231, 288
BpmI	CTGGAG	1 cut(s)	139
Bpu14I	TTCGAA	1 cut(s)	517
BpuEI	CTTGAG	2 cut(s)	239, 296
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	2 cut(s)	171, 346
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 370, 424
Bse21I	CCTNAGG	1 cut(s)	498
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	2 cut(s)	171, 346
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	3 cut(s)	172, 370, 424
BseMII	CTCAG	1 cut(s)	489
BseRI	GAGGAG	3 cut(s)	260, 317, 524
BseXI	GCAGC	5 cut(s)	29, 107, 171, 386, 387
BslI	CCNNNNNNNGG	3 cut(s)	172, 370, 424
BsmAI	GTCTC	1 cut(s)	157
BsmBI	CGTCTC	1 cut(s)	157
Bsp119I	TTCGAA	1 cut(s)	517
Bsp143I	GATC	2 cut(s)	135, 295
BspACI	CCGC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	490
BspHI	TCATGA	1 cut(s)	333
BspPI	GGATC	1 cut(s)	130
BspT104I	TTCGAA	1 cut(s)	517
BssECI	CCNNGG	2 cut(s)	171, 346
BssMI	GATC	2 cut(s)	135, 295
BssNI	GRCGYC	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	1 cut(s)	424
Bst6I	CTCTTC	2 cut(s)	450, 501
BstACI	GRCGYC	1 cut(s)	351
BstBI	TTCGAA	1 cut(s)	517
BstDEI	CTNAG	1 cut(s)	498
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	2 cut(s)	138, 298
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	2 cut(s)	135, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	417
BstSCI	CCNGG	1 cut(s)	345
BstV1I	GCAGC	5 cut(s)	29, 107, 171, 386, 387
BstV2I	GAAGAC	2 cut(s)	231, 288
Bsu36I	CCTNAGG	1 cut(s)	498
BtsCI	GGATG	1 cut(s)	162
CciI	TCATGA	1 cut(s)	333
CfoI	GCGC	1 cut(s)	125
CseI	GACGC	3 cut(s)	275, 332, 340
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	4 cut(s)	106, 334, 414, 433
CviJI	RGCY	7 cut(s)	28, 42, 53, 120, 170, 400, 536
CviKI_1	RGCY	7 cut(s)	28, 42, 53, 120, 170, 400, 536
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	1 cut(s)	498
DpnI	GATC	2 cut(s)	137, 297
DpnII	GATC	2 cut(s)	135, 295
DraIII	CACNNNGTG	1 cut(s)	109
DrdI	GACNNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	350
Eam1104I	CTCTTC	2 cut(s)	450, 501
EarI	CTCTTC	2 cut(s)	450, 501
Eco130I	CCWWGG	1 cut(s)	171
Eco81I	CCTNAGG	1 cut(s)	498
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	171
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	4 cut(s)	109, 337, 417, 436
FaiI	YATR	5 cut(s)	107, 335, 392, 415, 434
FalI	AAGNNNNNCTT	2 cut(s)	473, 505
FatI	CATG	4 cut(s)	105, 333, 413, 432
FbaI	TGATCA	1 cut(s)	295
FblI	GTMKAC	2 cut(s)	5, 342
Fnu4HI	GCNGC	5 cut(s)	43, 121, 160, 375, 401
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	5 cut(s)	43, 121, 160, 375, 401
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	5 cut(s)	43, 121, 160, 375, 401
GsuI	CTGGAG	1 cut(s)	139
HgaI	GACGC	3 cut(s)	275, 332, 340
HhaI	GCGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	4 cut(s)	109, 337, 417, 436
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HincII	GTYRAC	2 cut(s)	6, 343
HindII	GTYRAC	2 cut(s)	6, 343
HinfI	GANTC	3 cut(s)	86, 448, 460
Hpy166II	GTNNAC	2 cut(s)	6, 343
Hpy188I	TCNGA	2 cut(s)	18, 387
Hpy188III	TCNNGA	8 cut(s)	61, 256, 299, 313, 334, 452, 481, 497
Hpy8I	GTNNAC	2 cut(s)	6, 343
Hpy99I	CGWCG	3 cut(s)	50, 269, 326
HpyAV	CCTTC	1 cut(s)	513
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4IV	ACGT	2 cut(s)	150, 198
HpyCH4V	TGCA	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	498
HpySE526I	ACGT	2 cut(s)	150, 198
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	4 cut(s)	109, 337, 417, 436
HspAI	GCGC	1 cut(s)	123
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	2 cut(s)	135, 295
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	5 cut(s)	29, 107, 171, 386, 387
LweI	GCATC	1 cut(s)	171
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	2 cut(s)	150, 198
MalI	GATC	2 cut(s)	137, 297
MboI	GATC	2 cut(s)	135, 295
MboII	GAAGA	5 cut(s)	236, 293, 467, 515, 518
MluCI	AATT	2 cut(s)	260, 317
MlyI	GAGTC	1 cut(s)	442
MnlI	CCTC	8 cut(s)	64, 106, 196, 238, 295, 493, 502, 505
MroXI	GAANNNNTTC	2 cut(s)	459, 488
MspA1I	CMGCKG	1 cut(s)	42
MspR9I	CCNGG	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeII	GATC	2 cut(s)	135, 295
NlaIII	CATG	4 cut(s)	109, 337, 417, 436
NspI	RCATGY	1 cut(s)	417
NspV	TTCGAA	1 cut(s)	517
PagI	TCATGA	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 348
PdmI	GAANNNNTTC	2 cut(s)	459, 488
PfeI	GAWTC	2 cut(s)	86, 460
PflMI	CCANNNNNTGG	1 cut(s)	424
PkrI	GCNGC	5 cut(s)	44, 122, 161, 376, 402
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PvuII	CAGCTG	1 cut(s)	42
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SalI	GTCGAC	2 cut(s)	4, 341
SatI	GCNGC	5 cut(s)	43, 121, 160, 375, 401
Sau3AI	GATC	2 cut(s)	135, 295
ScaI	AGTACT	1 cut(s)	185
SchI	GAGTC	1 cut(s)	442
ScrFI	CCNGG	1 cut(s)	347
SetI	ASST	8 cut(s)	30, 44, 55, 153, 177, 201, 366, 516
SfaNI	GCATC	1 cut(s)	171
SfuI	TTCGAA	1 cut(s)	517
SmlI	CTYRAG	2 cut(s)	254, 311
SmoI	CTYRAG	2 cut(s)	254, 311
Sse9I	AATT	2 cut(s)	260, 317
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	345
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	424
TaiI	ACGT	2 cut(s)	153, 201
TaqI	TCGA	8 cut(s)	5, 60, 180, 264, 321, 342, 360, 517
TasI	AATT	2 cut(s)	260, 317
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	2 cut(s)	86, 460
TseI	GCWGC	5 cut(s)	42, 120, 159, 374, 400
TspDTI	ATGAA	4 cut(s)	237, 294, 322, 350
TspGWI	ACGGA	1 cut(s)	63
Van91I	CCANNNNNTGG	1 cut(s)	424
XagI	CCTNNNNNAGG	1 cut(s)	170
XapI	RAATTY	2 cut(s)	260, 317
XceI	RCATGY	1 cut(s)	417
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XmiI	GTMKAC	2 cut(s)	5, 342
XmnI	GAANNNNTTC	2 cut(s)	459, 488
XspI	CTAG	1 cut(s)	167
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.