RchiOBHm_Chr6g0244471

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000457
Physical Location & Seq
Reverse (-)
545024 .. 545512
489 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21911

Sequence Viewer

Length: 489 bp
ATGTCGACTGAAATTGGGAACAAGAAGCTAACCCTGACCAGCTGCGACGGAGATGATTTCCAGATTAGAGAGGCGGTTGCCCTTGAATCGCAGACCATCAAGCACATGGTGGAGGACGGCTGCGCCGATAATGCGATCCCCTTGCCCAACGTCACCGGCGCCATCCTAGCCAAGGTCATCGAGTACTGCAAGAGGCACGTTGAGGACAAGGAAAGCAAGAATGAAGACAATAAGAATGATCAGGAGGAGTCTCTCAAGGAATTCGACGCCGATTTCGTGGACGTCGACCAGGGCGTCCTGTTCGATCTGATATTGGCAGCAAACTATCTGAACATCAAGGGGCTGCTGGACTTGACATGCCAGACTGTGGCAGACATGATAAAGGGAAAGACTCCCGAACAAATTCGCGAGAAATTCAACATCAAGAATGACTTCACTCCTGAGGAAGAAGAGGAGGTTCGAAGGGAGAACGCATGGGCTTTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

162

Amino Acids

18.36

Weight (kDa)

4.46

Isoelectric Point (pI)

49.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 8 - 67 4.3e-26 Skp1 family, tetramerisation domain
Skp1 PF01466 113 - 160 4.2e-31 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 293
AatII GACGTC 1 cut(s) 285
AccB1I GGYRCC 1 cut(s) 158
AccB7I CCANNNNNTGG 1 cut(s) 367
AccI GTMKAC 2 cut(s) 5, 285
AccII CGCG 1 cut(s) 408
AciI CCGC 1 cut(s) 74
AclWI GGATC 1 cut(s) 130
AcsI RAATTY 3 cut(s) 260, 402, 413
AcyI GRCGYC 4 cut(s) 159, 267, 282, 294
AdeI CACNNNGTG 1 cut(s) 109
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 2 cut(s) 172, 367
AgsI TTSAA 2 cut(s) 86, 418
AjnI CCWGG 1 cut(s) 288
AluBI AGCT 2 cut(s) 28, 42
AluI AGCT 2 cut(s) 28, 42
Alw26I GTCTC 1 cut(s) 255
AlwI GGATC 1 cut(s) 130
ApeKI GCWGC 4 cut(s) 42, 120, 317, 343
ApoI RAATTY 3 cut(s) 260, 402, 413
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
Asp700I GAANNNNTTC 2 cut(s) 402, 431
AspLEI GCGC 2 cut(s) 125, 161
AsuHPI GGTGA 1 cut(s) 145
AsuII TTCGAA 1 cut(s) 460
AxyI CCTNAGG 1 cut(s) 441
BanI GGYRCC 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 231
BbvI GCAGC 4 cut(s) 29, 107, 329, 330
BccI CCATC 2 cut(s) 104, 170
BceAI ACGGC 1 cut(s) 133
BcgI CGANNNNNNTGC 2 cut(s) 124, 158
BciT130I CCWGG 1 cut(s) 290
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 1 cut(s) 167
BfoI RGCGCY 1 cut(s) 162
BisI GCNGC 4 cut(s) 43, 121, 318, 344
BlsI GCNGC 4 cut(s) 44, 122, 319, 345
BmcAI AGTACT 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 290
BpiI GAAGAC 1 cut(s) 231
Bpu14I TTCGAA 1 cut(s) 460
BpuEI CTTGAG 1 cut(s) 239
BsaHI GRCGYC 4 cut(s) 159, 267, 282, 294
BsaJI CCNNGG 2 cut(s) 171, 289
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 367
Bse118I RCCGGY 1 cut(s) 155
Bse21I CCTNAGG 1 cut(s) 441
BseBI CCWGG 1 cut(s) 290
BseDI CCNNGG 2 cut(s) 171, 289
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 172, 367
BseMII CTCAG 1 cut(s) 432
BseRI GAGGAG 2 cut(s) 260, 467
BseXI GCAGC 4 cut(s) 29, 107, 329, 330
Bsh1236I CGCG 1 cut(s) 408
BshNI GGYRCC 1 cut(s) 158
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 2 cut(s) 172, 367
BsmAI GTCTC 1 cut(s) 255
Bsp119I TTCGAA 1 cut(s) 460
Bsp143I GATC 3 cut(s) 135, 238, 304
Bsp68I TCGCGA 1 cut(s) 408
BspACI CCGC 1 cut(s) 74
BspCNI CTCAG 1 cut(s) 433
BspFNI CGCG 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 160
BspPI GGATC 1 cut(s) 130
BspT104I TTCGAA 1 cut(s) 460
BspT107I GGYRCC 1 cut(s) 158
BsrFI RCCGGY 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 171, 289
BssMI GATC 3 cut(s) 135, 238, 304
BssNI GRCGYC 4 cut(s) 159, 267, 282, 294
BssT1I CCWWGG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 1 cut(s) 444
BstACI GRCGYC 4 cut(s) 159, 267, 282, 294
BstBI TTCGAA 1 cut(s) 460
BstDEI CTNAG 1 cut(s) 441
BstENI CCTNNNNNAGG 1 cut(s) 170
BstF5I GGATG 1 cut(s) 162
BstFNI CGCG 1 cut(s) 408
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 2 cut(s) 125, 161
BstKTI GATC 3 cut(s) 138, 241, 307
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 3 cut(s) 135, 238, 304
BstMWI GCNNNNNNNGC 2 cut(s) 131, 167
BstNI CCWGG 1 cut(s) 290
BstNSI RCATGY 1 cut(s) 360
BstSCI CCNGG 1 cut(s) 288
BstUI CGCG 1 cut(s) 408
BstV1I GCAGC 4 cut(s) 29, 107, 329, 330
BstV2I GAAGAC 1 cut(s) 231
Bsu36I CCTNAGG 1 cut(s) 441
BtsCI GGATG 1 cut(s) 162
BtuMI TCGCGA 1 cut(s) 408
CfoI GCGC 2 cut(s) 125, 161
Cfr10I RCCGGY 1 cut(s) 155
CseI GACGC 2 cut(s) 275, 283
Csp6I GTAC 1 cut(s) 184
CviAII CATG 4 cut(s) 106, 357, 376, 474
CviJI RGCY 6 cut(s) 28, 42, 120, 170, 343, 479
CviKI_1 RGCY 6 cut(s) 28, 42, 120, 170, 343, 479
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 441
DinI GGCGCC 1 cut(s) 160
DpnI GATC 3 cut(s) 137, 240, 306
DpnII GATC 3 cut(s) 135, 238, 304
DraIII CACNNNGTG 1 cut(s) 109
DrdI GACNNNNNNGTC 1 cut(s) 293
DseDI GACNNNNNNGTC 1 cut(s) 293
Eam1104I CTCTTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 444
Eco130I CCWWGG 1 cut(s) 171
Eco81I CCTNAGG 1 cut(s) 441
EcoNI CCTNNNNNAGG 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 171
EgeI GGCGCC 1 cut(s) 160
EheI GGCGCC 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 4 cut(s) 109, 360, 379, 477
FaiI YATR 4 cut(s) 107, 358, 377, 475
FalI AAGNNNNNCTT 2 cut(s) 416, 448
FatI CATG 4 cut(s) 105, 356, 375, 473
FbaI TGATCA 1 cut(s) 238
FblI GTMKAC 2 cut(s) 5, 285
Fnu4HI GCNGC 4 cut(s) 43, 121, 318, 344
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 4 cut(s) 43, 121, 318, 344
FspBI CTAG 1 cut(s) 167
GlaI GCGC 2 cut(s) 124, 160
GluI GCNGC 4 cut(s) 43, 121, 318, 344
HaeII RGCGCY 1 cut(s) 162
HapII CCGG 1 cut(s) 156
HgaI GACGC 2 cut(s) 275, 283
HhaI GCGC 2 cut(s) 125, 161
Hin1I GRCGYC 4 cut(s) 159, 267, 282, 294
Hin1II CATG 4 cut(s) 109, 360, 379, 477
Hin6I GCGC 2 cut(s) 123, 159
HinP1I GCGC 2 cut(s) 123, 159
HincII GTYRAC 2 cut(s) 6, 286
HindII GTYRAC 2 cut(s) 6, 286
HinfI GANTC 3 cut(s) 86, 248, 391
HpaII CCGG 1 cut(s) 156
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 3 cut(s) 6, 280, 286
Hpy188I TCNGA 2 cut(s) 309, 330
Hpy188III TCNNGA 6 cut(s) 61, 242, 395, 407, 424, 440
Hpy8I GTNNAC 3 cut(s) 6, 280, 286
Hpy99I CGWCG 3 cut(s) 50, 269, 287
HpyAV CCTTC 1 cut(s) 456
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 3 cut(s) 150, 198, 282
HpyCH4V TGCA 1 cut(s) 189
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 167
HpyF3I CTNAG 1 cut(s) 441
HpySE526I ACGT 3 cut(s) 150, 198, 282
Hsp92I GRCGYC 4 cut(s) 159, 267, 282, 294
Hsp92II CATG 4 cut(s) 109, 360, 379, 477
HspAI GCGC 2 cut(s) 123, 159
KasI GGCGCC 1 cut(s) 158
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 3 cut(s) 135, 238, 304
Lsp1109I GCAGC 4 cut(s) 29, 107, 329, 330
MaeI CTAG 1 cut(s) 167
MaeII ACGT 3 cut(s) 150, 198, 282
MaeIII GTNAC 1 cut(s) 151
MalI GATC 3 cut(s) 137, 240, 306
MboI GATC 3 cut(s) 135, 238, 304
MboII GAAGA 3 cut(s) 236, 458, 461
MluCI AATT 4 cut(s) 12, 260, 402, 413
Mly113I GGCGCC 1 cut(s) 159
MlyI GAGTC 2 cut(s) 257, 385
MnlI CCTC 8 cut(s) 64, 106, 186, 196, 238, 436, 445, 448
MroXI GAANNNNTTC 2 cut(s) 402, 431
MspA1I CMGCKG 1 cut(s) 42
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 290
MvaI CCWGG 1 cut(s) 290
MvnI CGCG 1 cut(s) 408
MwoI GCNNNNNNNGC 2 cut(s) 131, 167
NarI GGCGCC 1 cut(s) 159
NdeII GATC 3 cut(s) 135, 238, 304
NlaIII CATG 4 cut(s) 109, 360, 379, 477
NlaIV GGNNCC 1 cut(s) 160
NmuCI GTSAC 1 cut(s) 151
NruI TCGCGA 1 cut(s) 408
NspI RCATGY 1 cut(s) 360
NspV TTCGAA 1 cut(s) 460
PcsI WCGNNNNNNNCGW 4 cut(s) 123, 273, 282, 291
PdmI GAANNNNTTC 2 cut(s) 402, 431
PfeI GAWTC 1 cut(s) 86
PflMI CCANNNNNTGG 1 cut(s) 367
PkrI GCNGC 4 cut(s) 44, 122, 319, 345
PleI GAGTC 2 cut(s) 256, 385
PluTI GGCGCC 1 cut(s) 162
PpsI GAGTC 2 cut(s) 256, 385
Psp6I CCWGG 1 cut(s) 288
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 1 cut(s) 160
PvuII CAGCTG 1 cut(s) 42
RruI TCGCGA 1 cut(s) 408
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SalI GTCGAC 2 cut(s) 4, 284
SatI GCNGC 4 cut(s) 43, 121, 318, 344
Sau3AI GATC 3 cut(s) 135, 238, 304
ScaI AGTACT 1 cut(s) 185
SchI GAGTC 2 cut(s) 257, 385
ScrFI CCNGG 1 cut(s) 290
SetI ASST 7 cut(s) 30, 44, 153, 177, 201, 285, 459
SfoI GGCGCC 1 cut(s) 160
SfuI TTCGAA 1 cut(s) 460
SgrAI CRCCGGYG 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 4 cut(s) 12, 260, 402, 413
SsiI CCGC 1 cut(s) 74
SspDI GGCGCC 1 cut(s) 158
SspMI CTAG 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 288
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 3 cut(s) 153, 201, 285
TaqI TCGA 6 cut(s) 5, 180, 264, 285, 303, 460
TasI AATT 4 cut(s) 12, 260, 402, 413
TatI WGTACW 1 cut(s) 183
TfiI GAWTC 1 cut(s) 86
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 4 cut(s) 42, 120, 317, 343
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 1 cut(s) 237
TspGWI ACGGA 1 cut(s) 63
Van91I CCANNNNNTGG 1 cut(s) 367
XagI CCTNNNNNAGG 1 cut(s) 170
XapI RAATTY 3 cut(s) 260, 402, 413
XceI RCATGY 1 cut(s) 360
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XmiI GTMKAC 2 cut(s) 5, 285
XmnI GAANNNNTTC 2 cut(s) 402, 431
XspI CTAG 1 cut(s) 167
ZraI GACGTC 1 cut(s) 283
ZrmI AGTACT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.