FvH4_2g01630

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000457
Physical Location & Seq
Reverse (-)
1467599 .. 1468075
477 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g01630.t1

Sequence Viewer

Length: 477 bp
ATGTCGACTGAAAACAAGAAGCTGCTAACCCTGAAGAGCGAGGACCAAGAGGTATTCGAGATCGATGAGGCAGTTGCTATTCAGTCTCAGACCATTAAGCACATGGTGGAGGATGGCTGCGCCGATAACGCCATCCCCTTGCCCAACGTCAGCGGCAGCATCCTTGCCAAGGTCATCGAGTACCTAAAGAAGCACGTTAAGGACGAGGAAAGCAAGAACGATGATGGGTCTCTCAAGAAATTCGACGAAGATTTCGTCAAAGTCGACCAGAGCGTTCTGTTTGATCTGATATTGGCAGCCAACTATCTGAACATCAAGGAGCTACTGGACTTGACATGCCAGACTGTGGCAGACATGATCAAGGGAAAGACTCCCGAAGAGATTCGCCAGACTTTCAACATCAAGAATGACTTCACTCCTGAGGAAGAAGCGGAGGTTCGAAGGGAGAATCAATGGGCATTTGAGGGCCTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

159

Amino Acids

17.99

Weight (kDa)

4.54

Isoelectric Point (pI)

49.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 8 - 67 7.1e-26 Skp1 family, tetramerisation domain
Skp1 PF01466 106 - 153 3.9e-31 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 346
AccI GTMKAC 2 cut(s) 5, 264
AciI CCGC 2 cut(s) 153, 431
AcsI RAATTY 1 cut(s) 239
AcuI CTGAAG 1 cut(s) 53
AdeI CACNNNGTG 1 cut(s) 106
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 2 cut(s) 169, 346
AgsI TTSAA 1 cut(s) 397
AluBI AGCT 2 cut(s) 22, 322
AluI AGCT 2 cut(s) 22, 322
Alw26I GTCTC 2 cut(s) 90, 234
AoxI GGCC 1 cut(s) 466
ApeKI GCWGC 4 cut(s) 22, 117, 156, 296
ApoI RAATTY 1 cut(s) 239
ArsI GACNNNNNNTTYG 4 cut(s) 236, 240, 268, 272
Asp700I GAANNNNTTC 2 cut(s) 381, 410
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 2 cut(s) 43, 466
AsuII TTCGAA 1 cut(s) 439
AvaII GGWCC 1 cut(s) 43
AxyI CCTNAGG 1 cut(s) 420
BbvI GCAGC 4 cut(s) 9, 104, 168, 308
BccI CCATC 3 cut(s) 107, 140, 218
BclI TGATCA 1 cut(s) 357
BcoDI GTCTC 2 cut(s) 90, 234
BisI GCNGC 5 cut(s) 23, 118, 154, 157, 297
BlsI GCNGC 5 cut(s) 24, 119, 155, 158, 298
Bme18I GGWCC 1 cut(s) 43
BmgT120I GGNCC 2 cut(s) 43, 466
BmsI GCATC 1 cut(s) 168
Bpu14I TTCGAA 1 cut(s) 439
BpuEI CTTGAG 1 cut(s) 218
Bsa29I ATCGAT 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 168
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 346
Bse1I ACTGG 1 cut(s) 330
Bse21I CCTNAGG 1 cut(s) 420
BseCI ATCGAT 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 3 cut(s) 118, 132, 159
BseLI CCNNNNNNNGG 2 cut(s) 169, 346
BseMII CTCAG 2 cut(s) 101, 411
BseNI ACTGG 1 cut(s) 330
BseXI GCAGC 4 cut(s) 9, 104, 168, 308
BshFI GGCC 1 cut(s) 468
BshVI ATCGAT 1 cut(s) 63
BslI CCNNNNNNNGG 2 cut(s) 169, 346
BsmAI GTCTC 2 cut(s) 90, 234
BsnI GGCC 1 cut(s) 468
Bso31I GGTCTC 1 cut(s) 234
Bsp119I TTCGAA 1 cut(s) 439
Bsp143I GATC 3 cut(s) 60, 283, 357
BspACI CCGC 2 cut(s) 153, 431
BspANI GGCC 1 cut(s) 468
BspCNI CTCAG 2 cut(s) 100, 412
BspDI ATCGAT 1 cut(s) 63
BspQI GCTCTTC 1 cut(s) 29
BspT104I TTCGAA 1 cut(s) 439
BspTNI GGTCTC 1 cut(s) 234
BsrI ACTGG 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 3 cut(s) 60, 283, 357
BssT1I CCWWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 346
Bst6I CTCTTC 2 cut(s) 29, 372
BstBI TTCGAA 1 cut(s) 439
BstDEI CTNAG 2 cut(s) 87, 420
BstENI CCTNNNNNAGG 1 cut(s) 167
BstF5I GGATG 3 cut(s) 118, 132, 159
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 3 cut(s) 63, 286, 360
BstMAI GTCTC 2 cut(s) 90, 234
BstMBI GATC 3 cut(s) 60, 283, 357
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 339
BstV1I GCAGC 4 cut(s) 9, 104, 168, 308
Bsu15I ATCGAT 1 cut(s) 63
Bsu36I CCTNAGG 1 cut(s) 420
BsuRI GGCC 1 cut(s) 468
BsuTUI ATCGAT 1 cut(s) 63
BtsCI GGATG 3 cut(s) 118, 132, 159
CfoI GCGC 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 43, 466
ClaI ATCGAT 1 cut(s) 63
Csp6I GTAC 1 cut(s) 181
CviAII CATG 3 cut(s) 103, 336, 355
CviJI RGCY 5 cut(s) 22, 117, 299, 322, 468
CviKI_1 RGCY 5 cut(s) 22, 117, 299, 322, 468
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 2 cut(s) 87, 420
DpnI GATC 3 cut(s) 62, 285, 359
DpnII GATC 3 cut(s) 60, 283, 357
DraIII CACNNNGTG 1 cut(s) 106
Eam1104I CTCTTC 2 cut(s) 29, 372
EarI CTCTTC 2 cut(s) 29, 372
Eco130I CCWWGG 1 cut(s) 168
Eco31I GGTCTC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 53
Eco81I CCTNAGG 1 cut(s) 420
EcoNI CCTNNNNNAGG 1 cut(s) 167
EcoO109I RGGNCCY 1 cut(s) 466
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 3 cut(s) 106, 339, 358
FaiI YATR 3 cut(s) 104, 337, 356
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FatI CATG 3 cut(s) 102, 335, 354
FbaI TGATCA 1 cut(s) 357
FblI GTMKAC 2 cut(s) 5, 264
Fnu4HI GCNGC 5 cut(s) 23, 118, 154, 157, 297
FokI GGATG 3 cut(s) 119, 125, 146
Fsp4HI GCNGC 5 cut(s) 23, 118, 154, 157, 297
GlaI GCGC 1 cut(s) 121
GluI GCNGC 5 cut(s) 23, 118, 154, 157, 297
HaeIII GGCC 1 cut(s) 468
HhaI GCGC 1 cut(s) 122
Hin1II CATG 3 cut(s) 106, 339, 358
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HincII GTYRAC 2 cut(s) 6, 265
HindII GTYRAC 2 cut(s) 6, 265
HinfI GANTC 3 cut(s) 370, 382, 448
Hpy166II GTNNAC 2 cut(s) 6, 265
Hpy188I TCNGA 3 cut(s) 90, 288, 309
Hpy188III TCNNGA 5 cut(s) 58, 235, 374, 403, 419
Hpy8I GTNNAC 2 cut(s) 6, 265
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 1 cut(s) 435
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4IV ACGT 2 cut(s) 147, 195
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 2 cut(s) 87, 420
HpySE526I ACGT 2 cut(s) 147, 195
Hsp92II CATG 3 cut(s) 106, 339, 358
HspAI GCGC 1 cut(s) 120
Ksp22I TGATCA 1 cut(s) 357
Kzo9I GATC 3 cut(s) 60, 283, 357
LguI GCTCTTC 1 cut(s) 29
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 6 cut(s) 44, 281, 311, 353, 401, 432
Lsp1109I GCAGC 4 cut(s) 9, 104, 168, 308
LweI GCATC 1 cut(s) 168
MaeII ACGT 2 cut(s) 147, 195
MalI GATC 3 cut(s) 62, 285, 359
MboI GATC 3 cut(s) 60, 283, 357
MboII GAAGA 4 cut(s) 46, 260, 389, 437
MluCI AATT 1 cut(s) 239
MlyI GAGTC 1 cut(s) 364
MnlI CCTC 8 cut(s) 34, 43, 61, 103, 199, 415, 427, 457
MroXI GAANNNNTTC 2 cut(s) 381, 410
MseI TTAA 2 cut(s) 96, 198
MspA1I CMGCKG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 3 cut(s) 60, 283, 357
NlaIII CATG 3 cut(s) 106, 339, 358
NspI RCATGY 1 cut(s) 339
NspV TTCGAA 1 cut(s) 439
PciSI GCTCTTC 1 cut(s) 29
PcsI WCGNNNNNNNCGW 4 cut(s) 201, 252, 261, 270
PdmI GAANNNNTTC 2 cut(s) 381, 410
PfeI GAWTC 2 cut(s) 382, 448
PflMI CCANNNNNTGG 1 cut(s) 346
PkrI GCNGC 5 cut(s) 24, 119, 155, 158, 298
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PspPI GGNCC 2 cut(s) 43, 466
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SalI GTCGAC 2 cut(s) 4, 263
SapI GCTCTTC 1 cut(s) 29
SaqAI TTAA 2 cut(s) 96, 198
SatI GCNGC 5 cut(s) 23, 118, 154, 157, 297
Sau3AI GATC 3 cut(s) 60, 283, 357
Sau96I GGNCC 2 cut(s) 43, 466
SchI GAGTC 1 cut(s) 364
SetI ASST 8 cut(s) 24, 54, 150, 174, 186, 198, 324, 438
SfaNI GCATC 1 cut(s) 168
SfuI TTCGAA 1 cut(s) 439
SinI GGWCC 1 cut(s) 43
SmlI CTYRAG 2 cut(s) 233, 470
SmoI CTYRAG 2 cut(s) 233, 470
Sse9I AATT 1 cut(s) 239
SsiI CCGC 2 cut(s) 153, 431
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 346
TaiI ACGT 2 cut(s) 150, 198
TaqI TCGA 7 cut(s) 5, 57, 63, 177, 243, 264, 439
TasI AATT 1 cut(s) 239
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 2 cut(s) 382, 448
Tru1I TTAA 2 cut(s) 96, 198
Tru9I TTAA 2 cut(s) 96, 198
TseI GCWGC 4 cut(s) 22, 117, 156, 296
Van91I CCANNNNNTGG 1 cut(s) 346
VpaK11BI GGWCC 1 cut(s) 43
XagI CCTNNNNNAGG 1 cut(s) 167
XapI RAATTY 1 cut(s) 239
XceI RCATGY 1 cut(s) 339
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XmiI GTMKAC 2 cut(s) 5, 264
XmnI GAANNNNTTC 2 cut(s) 381, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.