RchiOBHm_Chr6g0244371

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000457
Physical Location & Seq
Forward (+)
479011 .. 479540
530 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21901

Sequence Viewer

Length: 495 bp
ATGTCGACTGAAATTGAGAACAAGAAGGTAACCCTAAAAAGCTCCGACGGAAAGGAATTCGAGATTGATGAGGCTGTTGCTCTTCAATCTCAGACCATCAAGCACATGGTGGAGGATGGCTCCGCTGACAATGCAATCCCATTGCCCCAAGTCACCGGCGTCATCCTTGCCAAAATCATCGAGTACTTGAAGAAGCATGCTGAGGACAAGGAAGGCAAGAATGATGATGACAATCAGACGGACCAGGAGAAGTCTCTCAAGAAGTTCGACGCCGATTTCGTCAAAGTCGAGCAGTCCGTCCTGTTTGATCTTATATTGGCAGCAAAGTATCTGAACATCAACAAGCTGCTGGACTTGACATGCCAGACTGTGGCGGACATGATCAAAGTACAGTCTCCCGAGACGATTCGTCGCGTTTTCAACATAAAGAAGGGCTTCACTCCTCAAGAAAAAGAGATTATCCGAAAGGAATATCAATCGATTCACTACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

164

Amino Acids

18.7

Weight (kDa)

5.31

Isoelectric Point (pI)

56.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 8 - 67 7.3e-26 Skp1 family, tetramerisation domain
Skp1 PF01466 115 - 159 5.4e-19 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 370
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 414
AciI CCGC 2 cut(s) 123, 374
AcsI RAATTY 1 cut(s) 56
AcyI GRCGYC 2 cut(s) 159, 270
AdeI CACNNNGTG 1 cut(s) 109
AfaI GTAC 2 cut(s) 185, 390
AfiI CCNNNNNNNGG 1 cut(s) 370
AgsI TTSAA 3 cut(s) 86, 190, 421
AhdI GACNNNNNGTC 1 cut(s) 408
AjnI CCWGG 1 cut(s) 243
AluBI AGCT 2 cut(s) 42, 346
AluI AGCT 2 cut(s) 42, 346
Alw26I GTCTC 3 cut(s) 258, 395, 399
Ama87I CYCGRG 1 cut(s) 398
ApeKI GCWGC 2 cut(s) 320, 346
ApoI RAATTY 1 cut(s) 56
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
Asp700I GAANNNNTTC 1 cut(s) 434
AspS9I GGNCC 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 145
AvaI CYCGRG 1 cut(s) 398
AvaII GGWCC 1 cut(s) 241
BbvCI CCTCAGC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 332, 333
BccI CCATC 2 cut(s) 104, 110
BciT130I CCWGG 1 cut(s) 245
BclI TGATCA 1 cut(s) 381
BcoDI GTCTC 3 cut(s) 258, 395, 399
BisI GCNGC 2 cut(s) 321, 347
BlsI GCNGC 2 cut(s) 322, 348
BmcAI AGTACT 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 245
Bme18I GGWCC 1 cut(s) 241
BmeRI GACNNNNNGTC 1 cut(s) 408
BmeT110I CYCGRG 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 245
BplI GAGNNNNNCTC 2 cut(s) 104, 136
Bpu10I CCTNAGC 1 cut(s) 201
BpuEI CTTGAG 2 cut(s) 242, 429
Bsa29I ATCGAT 1 cut(s) 479
BsaBI GATNNNNATC 1 cut(s) 231
BsaHI GRCGYC 2 cut(s) 159, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 370
Bse118I RCCGGY 1 cut(s) 155
Bse3DI GCAATG 1 cut(s) 140
Bse8I GATNNNNATC 1 cut(s) 231
BseBI CCWGG 1 cut(s) 245
BseCI ATCGAT 1 cut(s) 479
BseGI GGATG 2 cut(s) 121, 162
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 1 cut(s) 370
BseMI GCAATG 1 cut(s) 140
BseMII CTCAG 2 cut(s) 104, 192
BseRI GAGGAG 1 cut(s) 432
BseXI GCAGC 2 cut(s) 332, 333
Bsh1236I CGCG 1 cut(s) 414
BshVI ATCGAT 1 cut(s) 479
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 370
BsmAI GTCTC 3 cut(s) 258, 395, 399
BsmBI CGTCTC 1 cut(s) 395
BsoBI CYCGRG 1 cut(s) 398
Bsp143I GATC 2 cut(s) 307, 381
BspACI CCGC 2 cut(s) 123, 374
BspCNI CTCAG 2 cut(s) 103, 193
BspDI ATCGAT 1 cut(s) 479
BspFNI CGCG 1 cut(s) 414
BspLI GGNNCC 1 cut(s) 121
BspQI GCTCTTC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 140
BsrFI RCCGGY 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 155
BssMI GATC 2 cut(s) 307, 381
BssNI GRCGYC 2 cut(s) 159, 270
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 2 cut(s) 370, 393
Bst6I CTCTTC 1 cut(s) 87
BstACI GRCGYC 2 cut(s) 159, 270
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 2 cut(s) 90, 201
BstEII GGTNACC 1 cut(s) 28
BstF5I GGATG 2 cut(s) 121, 162
BstFNI CGCG 1 cut(s) 414
BstKTI GATC 2 cut(s) 310, 384
BstMAI GTCTC 3 cut(s) 258, 395, 399
BstMBI GATC 2 cut(s) 307, 381
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 245
BstNSI RCATGY 2 cut(s) 200, 363
BstPI GGTNACC 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 243
BstUI CGCG 1 cut(s) 414
BstV1I GCAGC 2 cut(s) 332, 333
Bsu15I ATCGAT 1 cut(s) 479
BsuTUI ATCGAT 1 cut(s) 479
BtsCI GGATG 2 cut(s) 121, 162
Cac8I GCNNGC 1 cut(s) 198
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 241
ClaI ATCGAT 1 cut(s) 479
CseI GACGC 2 cut(s) 148, 278
Csp6I GTAC 2 cut(s) 184, 389
CviAII CATG 4 cut(s) 106, 197, 360, 379
CviJI RGCY 5 cut(s) 42, 74, 120, 346, 435
CviKI_1 RGCY 5 cut(s) 42, 74, 120, 346, 435
CviQI GTAC 2 cut(s) 184, 389
DdeI CTNAG 2 cut(s) 90, 201
DpnI GATC 2 cut(s) 309, 383
DpnII GATC 2 cut(s) 307, 381
DraIII CACNNNGTG 1 cut(s) 109
DriI GACNNNNNGTC 1 cut(s) 408
Eam1104I CTCTTC 1 cut(s) 87
Eam1105I GACNNNNNGTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 87
EciI GGCGGA 1 cut(s) 389
Eco47I GGWCC 1 cut(s) 241
Eco88I CYCGRG 1 cut(s) 398
Eco91I GGTNACC 1 cut(s) 28
EcoO65I GGTNACC 1 cut(s) 28
EcoRI GAATTC 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 243
Esp3I CGTCTC 1 cut(s) 395
FaeI CATG 4 cut(s) 109, 200, 363, 382
FaiI YATR 6 cut(s) 107, 198, 314, 361, 380, 425
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FatI CATG 4 cut(s) 105, 196, 359, 378
FbaI TGATCA 1 cut(s) 381
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 321, 347
FokI GGATG 2 cut(s) 128, 149
Fsp4HI GCNGC 2 cut(s) 321, 347
GluI GCNGC 2 cut(s) 321, 347
HapII CCGG 1 cut(s) 156
HgaI GACGC 2 cut(s) 148, 278
Hin1I GRCGYC 2 cut(s) 159, 270
Hin1II CATG 4 cut(s) 109, 200, 363, 382
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 406, 481
HpaII CCGG 1 cut(s) 156
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 5 cut(s) 46, 93, 237, 333, 464
Hpy188III TCNNGA 4 cut(s) 61, 259, 398, 446
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 3 cut(s) 50, 272, 414
HpyAV CCTTC 3 cut(s) 19, 206, 424
HpyCH4III ACNGT 2 cut(s) 370, 393
HpyCH4V TGCA 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 2 cut(s) 90, 201
Hsp92I GRCGYC 2 cut(s) 159, 270
Hsp92II CATG 4 cut(s) 109, 200, 363, 382
Ksp22I TGATCA 1 cut(s) 381
Kzo9I GATC 2 cut(s) 307, 381
LguI GCTCTTC 1 cut(s) 87
LmnI GCTCC 2 cut(s) 47, 125
LpnPI CCDG 6 cut(s) 169, 230, 257, 314, 335, 377
Lsp1109I GCAGC 2 cut(s) 332, 333
MaeIII GTNAC 2 cut(s) 28, 151
MalI GATC 2 cut(s) 309, 383
MboI GATC 2 cut(s) 307, 381
MboII GAAGA 2 cut(s) 74, 202
MluCI AATT 3 cut(s) 12, 56, 490
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 4 cut(s) 64, 106, 196, 453
MroXI GAANNNNTTC 1 cut(s) 434
MseI TTAA 1 cut(s) 493
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 245
MvaI CCWGG 1 cut(s) 245
MvnI CGCG 1 cut(s) 414
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 2 cut(s) 307, 381
NlaIII CATG 4 cut(s) 109, 200, 363, 382
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 151
NspI RCATGY 2 cut(s) 200, 363
PaeI GCATGC 1 cut(s) 200
PciSI GCTCTTC 1 cut(s) 87
PcsI WCGNNNNNNNCGW 3 cut(s) 276, 285, 294
PdmI GAANNNNTTC 1 cut(s) 434
PfeI GAWTC 2 cut(s) 406, 481
PflMI CCANNNNNTGG 1 cut(s) 370
PkrI GCNGC 2 cut(s) 322, 348
Psp6I CCWGG 1 cut(s) 243
PspEI GGTNACC 1 cut(s) 28
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 1 cut(s) 241
RsaI GTAC 2 cut(s) 185, 390
RsaNI GTAC 2 cut(s) 184, 389
SalI GTCGAC 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 1 cut(s) 493
SatI GCNGC 2 cut(s) 321, 347
Sau3AI GATC 2 cut(s) 307, 381
Sau96I GGNCC 1 cut(s) 241
ScaI AGTACT 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 245
SetI ASST 3 cut(s) 30, 44, 348
SgrAI CRCCGGYG 1 cut(s) 155
SinI GGWCC 1 cut(s) 241
SmlI CTYRAG 2 cut(s) 257, 444
SmoI CTYRAG 2 cut(s) 257, 444
SphI GCATGC 1 cut(s) 200
Sse9I AATT 3 cut(s) 12, 56, 490
SsiI CCGC 2 cut(s) 123, 374
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 2 cut(s) 370, 393
TaqI TCGA 6 cut(s) 5, 60, 180, 267, 288, 479
TasI AATT 3 cut(s) 12, 56, 490
TatI WGTACW 2 cut(s) 183, 388
TfiI GAWTC 2 cut(s) 406, 481
Tru1I TTAA 1 cut(s) 493
Tru9I TTAA 1 cut(s) 493
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 2 cut(s) 320, 346
Tsp45I GTSAC 1 cut(s) 151
TspGWI ACGGA 3 cut(s) 63, 254, 286
Van91I CCANNNNNTGG 1 cut(s) 370
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 1 cut(s) 56
XceI RCATGY 2 cut(s) 200, 363
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 434
ZrmI AGTACT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.