Rh7CG396900

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000457
Physical Location & Seq
Forward (+)
50625204 .. 50626450
1247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG396900.1

Sequence Viewer

Length: 480 bp
ATGTCGTCCGAGAAGAAGATCATAACCCTAAAGAGCTCCGACAACGAGACCTTCGAGGTCGATGAGGCGGTGGCCCTGGAATCGCAGACCATCAAGCACATGGTGGAGGACGGCTGCGCCGACAATGCGATCCCCTTGCCCAACGTCACCGGTGCCATCCTAGCCAAGGTGATCGAGTACTGCAAGAAGCACGTTGAGGAGGGCGGCAAAGATGCCGAGAAGGACAAGGCCGGCGACTCGCCGTTGAAGGAGTTCGACTCCGATTTCATCAAGGTCGACCAGAACGTCCTGTTCGACCTCATCTTGGCTGCCAACTATCTGAACATCAAGGGACTTCTGGATCTGACTTGCCAGACTGTGGCAGACATGATTAAGGGGAAGACTCCTGAAGAGATCCGCAAGACTTTCAACATTAAGAATGACTTCACTCCGGAAGAAGAGGAGGAGGTTCGGAGGGAGAACCAGTGGGCATTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

159

Amino Acids

17.88

Weight (kDa)

4.59

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 6 - 65 1.1e-28 Skp1 family, tetramerisation domain
Skp1 PF01466 110 - 157 4.6e-32 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 152
AccB7I CCANNNNNTGG 1 cut(s) 358
AccI GTMKAC 1 cut(s) 276
AccIII TCCGGA 1 cut(s) 430
AciI CCGC 3 cut(s) 68, 204, 397
AclWI GGATC 3 cut(s) 124, 348, 388
AcuI CTGAAG 1 cut(s) 408
AdeI CACNNNGTG 1 cut(s) 103
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 3 cut(s) 166, 304, 358
AgeI ACCGGT 1 cut(s) 149
AgsI TTSAA 2 cut(s) 247, 409
AjnI CCWGG 1 cut(s) 75
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 3 cut(s) 124, 348, 388
Aor13HI TCCGGA 1 cut(s) 430
AoxI GGCC 2 cut(s) 72, 228
ApeKI GCWGC 2 cut(s) 114, 308
AsiGI ACCGGT 1 cut(s) 149
Asp700I GAANNNNTTC 2 cut(s) 251, 422
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 2 cut(s) 139, 181
BanI GGYRCC 1 cut(s) 152
BanII GRGCYC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 386
Bbv12I GWGCWC 1 cut(s) 38
BbvI GCAGC 2 cut(s) 101, 295
BccI CCATC 2 cut(s) 98, 164
BceAI ACGGC 2 cut(s) 127, 226
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 1 cut(s) 161
BisI GCNGC 3 cut(s) 115, 205, 309
BlsI GCNGC 3 cut(s) 116, 206, 310
BmcAI AGTACT 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 77
BmsI GCATC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 386
BplI GAGNNNNNCTC 2 cut(s) 242, 274
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 2 cut(s) 75, 165
BsaWI WCCGGW 2 cut(s) 149, 430
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 304, 358
Bse118I RCCGGY 2 cut(s) 149, 230
Bse1I ACTGG 1 cut(s) 463
BseAI TCCGGA 1 cut(s) 430
BseBI CCWGG 1 cut(s) 77
BseDI CCNNGG 2 cut(s) 75, 165
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 3 cut(s) 166, 304, 358
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 3 cut(s) 212, 455, 458
BseXI GCAGC 2 cut(s) 101, 295
BshFI GGCC 2 cut(s) 74, 230
BshNI GGYRCC 1 cut(s) 152
BshTI ACCGGT 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 38
BsiSI CCGG 3 cut(s) 150, 231, 431
BslFI GGGAC 1 cut(s) 345
BslI CCNNNNNNNGG 3 cut(s) 166, 304, 358
BsmAI GTCTC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 345
BsnI GGCC 2 cut(s) 74, 230
Bso31I GGTCTC 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 38
Bsp13I TCCGGA 1 cut(s) 430
Bsp143I GATC 5 cut(s) 18, 129, 171, 340, 393
BspACI CCGC 3 cut(s) 68, 204, 397
BspANI GGCC 2 cut(s) 74, 230
BspEI TCCGGA 1 cut(s) 430
BspLI GGNNCC 1 cut(s) 154
BspPI GGATC 3 cut(s) 124, 348, 388
BspT107I GGYRCC 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 41
BsrFI RCCGGY 2 cut(s) 149, 230
BsrI ACTGG 1 cut(s) 463
BssAI RCCGGY 2 cut(s) 149, 230
BssECI CCNNGG 2 cut(s) 75, 165
BssMI GATC 5 cut(s) 18, 129, 171, 340, 393
BssT1I CCWWGG 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 358
Bst6I CTCTTC 2 cut(s) 384, 432
BstC8I GCNNGC 1 cut(s) 232
BstENI CCTNNNNNAGG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 156
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 5 cut(s) 21, 132, 174, 343, 396
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 5 cut(s) 18, 129, 171, 340, 393
BstMWI GCNNNNNNNGC 2 cut(s) 125, 161
BstNI CCWGG 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 75
BstV1I GCAGC 2 cut(s) 101, 295
BstV2I GAAGAC 1 cut(s) 386
BstX2I RGATCY 2 cut(s) 340, 393
BstYI RGATCY 2 cut(s) 340, 393
BsuRI GGCC 2 cut(s) 74, 230
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 470
Cac8I GCNNGC 1 cut(s) 232
CfoI GCGC 1 cut(s) 119
Cfr10I RCCGGY 2 cut(s) 149, 230
Cfr13I GGNCC 1 cut(s) 73
Csp6I GTAC 1 cut(s) 178
CspAI ACCGGT 1 cut(s) 149
CviAII CATG 2 cut(s) 100, 367
CviJI RGCY 6 cut(s) 36, 74, 114, 164, 230, 308
CviKI_1 RGCY 6 cut(s) 36, 74, 114, 164, 230, 308
CviQI GTAC 1 cut(s) 178
DpnI GATC 5 cut(s) 20, 131, 173, 342, 395
DpnII GATC 5 cut(s) 18, 129, 171, 340, 393
DraIII CACNNNGTG 1 cut(s) 103
DrdI GACNNNNNNGTC 1 cut(s) 284
DseDI GACNNNNNNGTC 1 cut(s) 284
Eam1104I CTCTTC 2 cut(s) 384, 432
EarI CTCTTC 2 cut(s) 384, 432
Ecl136II GAGCTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 38
Eco31I GGTCTC 1 cut(s) 41
Eco53kI GAGCTC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 408
EcoICRI GAGCTC 1 cut(s) 36
EcoNI CCTNNNNNAGG 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 2 cut(s) 103, 370
FaiI YATR 3 cut(s) 23, 101, 368
FalI AAGNNNNNCTT 2 cut(s) 407, 439
FaqI GGGAC 1 cut(s) 345
FatI CATG 2 cut(s) 99, 366
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 3 cut(s) 115, 205, 309
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 3 cut(s) 115, 205, 309
FspBI CTAG 1 cut(s) 161
GlaI GCGC 1 cut(s) 118
GluI GCNGC 3 cut(s) 115, 205, 309
HaeIII GGCC 2 cut(s) 74, 230
HapII CCGG 3 cut(s) 150, 231, 431
HhaI GCGC 1 cut(s) 119
Hin1II CATG 2 cut(s) 103, 370
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 4 cut(s) 80, 236, 257, 382
HpaII CCGG 3 cut(s) 150, 231, 431
HphI GGTGA 2 cut(s) 139, 181
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 6 cut(s) 10, 40, 262, 321, 345, 453
Hpy188III TCNNGA 3 cut(s) 338, 386, 431
Hpy8I GTNNAC 1 cut(s) 277
HpyAV CCTTC 3 cut(s) 61, 214, 241
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 3 cut(s) 144, 192, 285
HpyCH4V TGCA 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 161
HpySE526I ACGT 3 cut(s) 144, 192, 285
Hsp92II CATG 2 cut(s) 103, 370
HspAI GCGC 1 cut(s) 117
Kpn2I TCCGGA 1 cut(s) 430
KroI GCCGGC 1 cut(s) 230
KroNI GCCGGC 1 cut(s) 232
Kzo9I GATC 5 cut(s) 18, 129, 171, 340, 393
LmnI GCTCC 1 cut(s) 41
Lsp1109I GCAGC 2 cut(s) 101, 295
LweI GCATC 1 cut(s) 202
MaeI CTAG 1 cut(s) 161
MaeII ACGT 3 cut(s) 144, 192, 285
MaeIII GTNAC 1 cut(s) 145
MalI GATC 5 cut(s) 20, 131, 173, 342, 395
MboI GATC 5 cut(s) 18, 129, 171, 340, 393
MboII GAAGA 6 cut(s) 25, 28, 391, 401, 446, 449
MflI RGATCY 2 cut(s) 340, 393
MhlI GDGCHC 1 cut(s) 38
MlyI GAGTC 3 cut(s) 230, 251, 376
MmeI TCCRAC 1 cut(s) 63
MroI TCCGGA 1 cut(s) 430
MroNI GCCGGC 1 cut(s) 230
MroXI GAANNNNTTC 2 cut(s) 251, 422
MseI TTAA 2 cut(s) 372, 414
MslI CAYNNNNRTG 1 cut(s) 475
MspI CCGG 3 cut(s) 150, 231, 431
MspR9I CCNGG 1 cut(s) 77
MvaI CCWGG 1 cut(s) 77
MwoI GCNNNNNNNGC 2 cut(s) 125, 161
NaeI GCCGGC 1 cut(s) 232
NdeII GATC 5 cut(s) 18, 129, 171, 340, 393
NgoMIV GCCGGC 1 cut(s) 230
NlaIII CATG 2 cut(s) 103, 370
NlaIV GGNNCC 1 cut(s) 154
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 145
PcsI WCGNNNNNNNCGW 4 cut(s) 51, 117, 282, 291
PdiI GCCGGC 1 cut(s) 232
PdmI GAANNNNTTC 2 cut(s) 251, 422
PfeI GAWTC 1 cut(s) 80
PflMI CCANNNNNTGG 1 cut(s) 358
PinAI ACCGGT 1 cut(s) 149
PkrI GCNGC 3 cut(s) 116, 206, 310
PleI GAGTC 3 cut(s) 230, 251, 376
PpsI GAGTC 3 cut(s) 230, 251, 376
Psp124BI GAGCTC 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 1 cut(s) 73
PsuI RGATCY 2 cut(s) 340, 393
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
RseI CAYNNNNRTG 1 cut(s) 475
SacI GAGCTC 1 cut(s) 38
SalI GTCGAC 1 cut(s) 275
SaqAI TTAA 2 cut(s) 372, 414
SatI GCNGC 3 cut(s) 115, 205, 309
Sau3AI GATC 5 cut(s) 18, 129, 171, 340, 393
Sau96I GGNCC 1 cut(s) 73
ScaI AGTACT 1 cut(s) 179
SchI GAGTC 3 cut(s) 230, 251, 376
ScrFI CCNGG 1 cut(s) 77
SduI GDGCHC 1 cut(s) 38
SfaNI GCATC 1 cut(s) 202
SgrAI CRCCGGYG 1 cut(s) 149
SmiMI CAYNNNNRTG 1 cut(s) 475
SsiI CCGC 3 cut(s) 68, 204, 397
SspMI CTAG 1 cut(s) 161
SstI GAGCTC 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 75
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 3 cut(s) 147, 195, 288
TaqI TCGA 6 cut(s) 54, 60, 174, 255, 276, 294
TatI WGTACW 1 cut(s) 177
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 2 cut(s) 372, 414
Tru9I TTAA 2 cut(s) 372, 414
TscAI CASTG 1 cut(s) 470
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 2 cut(s) 114, 308
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 1 cut(s) 256
TspRI CASTG 1 cut(s) 470
Van91I CCANNNNNTGG 1 cut(s) 358
XagI CCTNNNNNAGG 1 cut(s) 164
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XmiI GTMKAC 1 cut(s) 276
XmnI GAANNNNTTC 2 cut(s) 251, 422
XspI CTAG 1 cut(s) 161
ZrmI AGTACT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.