Rh6CG016200

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000457
Physical Location & Seq
Forward (+)
1716444 .. 1717237
794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG016200.1

Sequence Viewer

Length: 468 bp
ATGTCGACTGAAATTGAGAACAAGAAGCTAACCCTGAAGAGCTCCGGTGGAGAGGAATTCGAGATTGATGAGGCTGTTGCTCTTCAATCTGGGAGAATCAAGCACATGGTGGAGGACGGCTCCGCTGATAATGCCATCCCATTGCCCCAGGTCACCGGCGTCATCCTTGCCAAAATCATCGAGTACTTGAAGAAGCACGCTGAGGACAAGGAAAGCAAGAATGATGATGACAATAAGACGGATCAGGAGAAGTCTCTCAAGAAGTTCGACGCCGATTTCGTCAACGTCGAGGAGTCCGTCCTGTTTGATCTTGTATTGGCAGCAAAGTATCTGAACATCAACAAGCTGCTGGACTTGACATGTCAGGCTGTGGTGGACATGATCAGAGCAAAGACGCCTCCCGAGATGATTCGTCACGTTTTCAACATCAAGAAGGGCTTCACTCCTGAAGAAGAAGAGATTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

155

Amino Acids

17.45

Weight (kDa)

4.83

Isoelectric Point (pI)

56.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 8 - 67 9e-22 Skp1 family, tetramerisation domain
Skp1 PF01466 115 - 153 3.4e-14 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 123
AclWI GGATC 1 cut(s) 249
AcsI RAATTY 1 cut(s) 56
AcuI CTGAAG 2 cut(s) 56, 468
AcyI GRCGYC 3 cut(s) 159, 270, 395
AdeI CACNNNGTG 1 cut(s) 109
AfaI GTAC 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 359
AgsI TTSAA 3 cut(s) 86, 190, 424
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 3 cut(s) 28, 42, 346
AluI AGCT 3 cut(s) 28, 42, 346
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 1 cut(s) 258
AlwI GGATC 1 cut(s) 249
Ama87I CYCGRG 1 cut(s) 401
ApeKI GCWGC 2 cut(s) 320, 346
ApoI RAATTY 1 cut(s) 56
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
Asp700I GAANNNNTTC 1 cut(s) 437
AsuHPI GGTGA 1 cut(s) 145
AvaI CYCGRG 1 cut(s) 401
BanII GRGCYC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 44
BbvCI CCTCAGC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 332, 333
BccI CCATC 1 cut(s) 143
BceAI ACGGC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 149
BclI TGATCA 1 cut(s) 381
BcoDI GTCTC 1 cut(s) 258
BisI GCNGC 2 cut(s) 321, 347
BlsI GCNGC 2 cut(s) 322, 348
BmcAI AGTACT 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 149
BmeT110I CYCGRG 1 cut(s) 401
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 149
BplI GAGNNNNNCTC 2 cut(s) 104, 136
Bpu10I CCTNAGC 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 242
BsaHI GRCGYC 3 cut(s) 159, 270, 395
BsaJI CCNNGG 1 cut(s) 147
BsaWI WCCGGW 1 cut(s) 44
Bse118I RCCGGY 1 cut(s) 155
Bse3DI GCAATG 1 cut(s) 140
BseBI CCWGG 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 2 cut(s) 135, 162
BseMI GCAATG 1 cut(s) 140
BseMII CTCAG 1 cut(s) 192
BseRI GAGGAG 1 cut(s) 305
BseXI GCAGC 2 cut(s) 332, 333
BsiHKAI GWGCWC 1 cut(s) 44
BsiHKCI CYCGRG 1 cut(s) 401
BsiSI CCGG 2 cut(s) 45, 156
BsmAI GTCTC 1 cut(s) 258
BsoBI CYCGRG 1 cut(s) 401
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 3 cut(s) 241, 307, 381
BspACI CCGC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 121
BspPI GGATC 1 cut(s) 249
BspQI GCTCTTC 2 cut(s) 32, 87
BsrDI GCAATG 1 cut(s) 140
BsrFI RCCGGY 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 3 cut(s) 241, 307, 381
BssNI GRCGYC 3 cut(s) 159, 270, 395
Bst2UI CCWGG 1 cut(s) 149
Bst6I CTCTTC 3 cut(s) 32, 87, 450
BstACI GRCGYC 3 cut(s) 159, 270, 395
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 1 cut(s) 201
BstEII GGTNACC 1 cut(s) 151
BstF5I GGATG 2 cut(s) 135, 162
BstKTI GATC 3 cut(s) 244, 310, 384
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 3 cut(s) 241, 307, 381
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 149
BstNSI RCATGY 1 cut(s) 363
BstPI GGTNACC 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 147
BstV1I GCAGC 2 cut(s) 332, 333
BtsCI GGATG 2 cut(s) 135, 162
Cac8I GCNNGC 1 cut(s) 198
Cfr10I RCCGGY 1 cut(s) 155
CseI GACGC 3 cut(s) 148, 278, 403
Csp6I GTAC 1 cut(s) 184
CviAII CATG 3 cut(s) 106, 360, 379
CviJI RGCY 7 cut(s) 28, 42, 74, 120, 346, 368, 438
CviKI_1 RGCY 7 cut(s) 28, 42, 74, 120, 346, 368, 438
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 201
DpnI GATC 3 cut(s) 243, 309, 383
DpnII GATC 3 cut(s) 241, 307, 381
DraIII CACNNNGTG 1 cut(s) 109
Eam1104I CTCTTC 3 cut(s) 32, 87, 450
EarI CTCTTC 3 cut(s) 32, 87, 450
Ecl136II GAGCTC 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 42
Eco57I CTGAAG 2 cut(s) 56, 468
Eco88I CYCGRG 1 cut(s) 401
Eco91I GGTNACC 1 cut(s) 151
EcoICRI GAGCTC 1 cut(s) 42
EcoO65I GGTNACC 1 cut(s) 151
EcoRI GAATTC 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 44
FaeI CATG 3 cut(s) 109, 363, 382
FaiI YATR 3 cut(s) 107, 361, 380
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FatI CATG 3 cut(s) 105, 359, 378
FbaI TGATCA 1 cut(s) 381
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 321, 347
FokI GGATG 2 cut(s) 122, 149
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 2 cut(s) 321, 347
GluI GCNGC 2 cut(s) 321, 347
HapII CCGG 2 cut(s) 45, 156
HgaI GACGC 3 cut(s) 148, 278, 403
Hin1I GRCGYC 3 cut(s) 159, 270, 395
Hin1II CATG 3 cut(s) 109, 363, 382
HincII GTYRAC 2 cut(s) 6, 283
HindII GTYRAC 2 cut(s) 6, 283
HinfI GANTC 3 cut(s) 96, 293, 409
HpaII CCGG 2 cut(s) 45, 156
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 3 cut(s) 6, 283, 376
Hpy188I TCNGA 3 cut(s) 333, 386, 467
Hpy188III TCNNGA 6 cut(s) 61, 245, 259, 401, 430, 446
Hpy8I GTNNAC 3 cut(s) 6, 283, 376
Hpy99I CGWCG 2 cut(s) 272, 290
HpyAV CCTTC 1 cut(s) 427
HpyCH4IV ACGT 2 cut(s) 285, 417
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 201
HpySE526I ACGT 2 cut(s) 285, 417
Hsp92I GRCGYC 3 cut(s) 159, 270, 395
Hsp92II CATG 3 cut(s) 109, 363, 382
Ksp22I TGATCA 1 cut(s) 381
Kzo9I GATC 3 cut(s) 241, 307, 381
LguI GCTCTTC 2 cut(s) 32, 87
LmnI GCTCC 2 cut(s) 47, 125
Lsp1109I GCAGC 2 cut(s) 332, 333
MaeII ACGT 2 cut(s) 285, 417
MaeIII GTNAC 2 cut(s) 151, 413
MalI GATC 3 cut(s) 243, 309, 383
MboI GATC 3 cut(s) 241, 307, 381
MboII GAAGA 6 cut(s) 49, 74, 202, 461, 464, 467
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 2 cut(s) 12, 56
MlyI GAGTC 1 cut(s) 302
MnlI CCTC 6 cut(s) 46, 64, 106, 196, 283, 408
MroXI GAANNNNTTC 1 cut(s) 437
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 2 cut(s) 45, 156
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 3 cut(s) 241, 307, 381
NlaIII CATG 3 cut(s) 109, 363, 382
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 151, 413
NspI RCATGY 1 cut(s) 363
PciI ACATGT 1 cut(s) 359
PciSI GCTCTTC 2 cut(s) 32, 87
PcsI WCGNNNNNNNCGW 3 cut(s) 276, 285, 294
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 2 cut(s) 96, 409
PkrI GCNGC 2 cut(s) 322, 348
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PscI ACATGT 1 cut(s) 359
Psp124BI GAGCTC 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 147
PspEI GGTNACC 1 cut(s) 151
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 121
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SacI GAGCTC 1 cut(s) 44
SalI GTCGAC 1 cut(s) 4
SapI GCTCTTC 2 cut(s) 32, 87
SatI GCNGC 2 cut(s) 321, 347
Sau3AI GATC 3 cut(s) 241, 307, 381
ScaI AGTACT 1 cut(s) 185
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 1 cut(s) 44
SetI ASST 6 cut(s) 30, 44, 153, 288, 348, 420
SgrAI CRCCGGYG 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 2 cut(s) 12, 56
SsiI CCGC 1 cut(s) 123
SstI GAGCTC 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 147
TaiI ACGT 2 cut(s) 288, 420
TaqI TCGA 5 cut(s) 5, 60, 180, 267, 288
TasI AATT 2 cut(s) 12, 56
TatI WGTACW 1 cut(s) 183
TfiI GAWTC 2 cut(s) 96, 409
TseFI GTSAC 2 cut(s) 151, 413
TseI GCWGC 2 cut(s) 320, 346
Tsp45I GTSAC 2 cut(s) 151, 413
TspGWI ACGGA 2 cut(s) 254, 286
XapI RAATTY 1 cut(s) 56
XceI RCATGY 1 cut(s) 363
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 437
ZrmI AGTACT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.