Prupe.8G166100_v2.0.a1

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000457
Physical Location & Seq
Forward (+)
17230155 .. 17231515
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G166100.1

Sequence Viewer

Length: 474 bp
ATGGCCACTGAGAAGAAGATGATAACCCTGAAGAGCGCGGACGGCGAGATTTTCGAGGTGGAAGAGGCGGTGGCTCTGGAATCGCAGACCATCAAGCATATGGCGGAGGACGACTGCGTTGACAATGCAATTCCTTTGCCCAACGTCGAAAGCCATGTCCTCGCCAAAGTCATAGAGTATTGCCGGAAGCACGTTGAGCTTGCGGCCAATGACGAGAACAAGGACACCGTCAAGGAGTTCAACGATGACTTCGTCAACGAAATTAAGGCCGACCAGAGTGTTCTATTTGATACAATCTTGGCTGCAAACTATCTGAACATCAAGAGCCTGCTGGATTTGACCTGCCAGACTGTGGCTGACATGATCAAGGGAAAGGCACCTGAGGAGATTCGCAAGACCTTTAACATCCACAATGATTTCACTCCGGAGGAAGAAGCGGAAATTCGCAAGGAGAACGAATGGGCATTCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

158

Amino Acids

17.86

Weight (kDa)

4.51

Isoelectric Point (pI)

41.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 350
AccB1I GGYRCC 1 cut(s) 376
AccB7I CCANNNNNTGG 1 cut(s) 352
AccII CGCG 1 cut(s) 38
AccIII TCCGGA 1 cut(s) 424
AciI CCGC 5 cut(s) 38, 68, 104, 203, 437
AcoI YGGCCR 2 cut(s) 3, 204
AcsI RAATTY 1 cut(s) 441
AcuI CTGAAG 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 352
AgsI TTSAA 1 cut(s) 241
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Aor13HI TCCGGA 1 cut(s) 424
AoxI GGCC 3 cut(s) 3, 204, 267
ApeKI GCWGC 1 cut(s) 302
ApoI RAATTY 1 cut(s) 441
ArsI GACNNNNNNTTYG 2 cut(s) 141, 173
AspLEI GCGC 1 cut(s) 38
AsuII TTCGAA 1 cut(s) 468
AxyI CCTNAGG 1 cut(s) 381
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 376
BbvI GCAGC 1 cut(s) 289
BccI CCATC 1 cut(s) 98
BceAI ACGGC 1 cut(s) 58
BclI TGATCA 1 cut(s) 363
BfuAI ACCTGC 1 cut(s) 350
BisI GCNGC 2 cut(s) 204, 303
BlsI GCNGC 2 cut(s) 205, 304
BmiI GGNNCC 1 cut(s) 378
Bpu14I TTCGAA 1 cut(s) 468
BsaWI WCCGGW 1 cut(s) 424
Bsc4I CCNNNNNNNGG 1 cut(s) 352
Bse21I CCTNAGG 1 cut(s) 381
BseAI TCCGGA 1 cut(s) 424
BseGI GGATG 1 cut(s) 405
BseLI CCNNNNNNNGG 1 cut(s) 352
BseMII CTCAG 1 cut(s) 372
BseRI GAGGAG 1 cut(s) 398
BseXI GCAGC 1 cut(s) 289
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 3 cut(s) 5, 206, 269
BshNI GGYRCC 1 cut(s) 376
BsiSI CCGG 2 cut(s) 184, 425
BslI CCNNNNNNNGG 1 cut(s) 352
BsmI GAATGC 1 cut(s) 464
BsnI GGCC 3 cut(s) 5, 206, 269
Bsp119I TTCGAA 1 cut(s) 468
Bsp13I TCCGGA 1 cut(s) 424
Bsp143I GATC 1 cut(s) 363
BspACI CCGC 5 cut(s) 38, 68, 104, 203, 437
BspANI GGCC 3 cut(s) 5, 206, 269
BspCNI CTCAG 1 cut(s) 373
BspEI TCCGGA 1 cut(s) 424
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 1 cut(s) 378
BspMI ACCTGC 1 cut(s) 350
BspQI GCTCTTC 1 cut(s) 26
BspT104I TTCGAA 1 cut(s) 468
BspT107I GGYRCC 1 cut(s) 376
BssMI GATC 1 cut(s) 363
Bst4CI ACNGT 2 cut(s) 229, 352
Bst6I CTCTTC 2 cut(s) 26, 57
BstBI TTCGAA 1 cut(s) 468
BstC8I GCNNGC 2 cut(s) 201, 329
BstDEI CTNAG 2 cut(s) 9, 381
BstF5I GGATG 1 cut(s) 405
BstFNI CGCG 1 cut(s) 38
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 1 cut(s) 366
BstMBI GATC 1 cut(s) 363
BstMWI GCNNNNNNNGC 2 cut(s) 42, 196
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 1 cut(s) 289
Bsu36I CCTNAGG 1 cut(s) 381
BsuRI GGCC 3 cut(s) 5, 206, 269
BtsCI GGATG 1 cut(s) 405
BtsIMutI CAGTG 1 cut(s) 6
BveI ACCTGC 1 cut(s) 350
Cac8I GCNNGC 2 cut(s) 201, 329
CfoI GCGC 1 cut(s) 38
CviAII CATG 2 cut(s) 155, 361
CviJI RGCY 9 cut(s) 5, 74, 153, 199, 206, 269, 302, 327, 356
CviKI_1 RGCY 9 cut(s) 5, 74, 153, 199, 206, 269, 302, 327, 356
DdeI CTNAG 2 cut(s) 9, 381
DpnI GATC 1 cut(s) 365
DpnII GATC 1 cut(s) 363
EaeI YGGCCR 2 cut(s) 3, 204
Eam1104I CTCTTC 2 cut(s) 26, 57
EarI CTCTTC 2 cut(s) 26, 57
EciI GGCGGA 1 cut(s) 119
Eco57I CTGAAG 1 cut(s) 50
Eco81I CCTNAGG 1 cut(s) 381
FaeI CATG 2 cut(s) 158, 364
FaiI YATR 5 cut(s) 99, 101, 156, 173, 362
FatI CATG 2 cut(s) 154, 360
FauNDI CATATG 1 cut(s) 99
FbaI TGATCA 1 cut(s) 363
Fnu4HI GCNGC 2 cut(s) 204, 303
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 2 cut(s) 204, 303
GlaI GCGC 1 cut(s) 37
GluI GCNGC 2 cut(s) 204, 303
HaeIII GGCC 3 cut(s) 5, 206, 269
HapII CCGG 2 cut(s) 184, 425
HhaI GCGC 1 cut(s) 38
Hin1II CATG 2 cut(s) 158, 364
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HincII GTYRAC 2 cut(s) 121, 256
HindII GTYRAC 2 cut(s) 121, 256
HinfI GANTC 2 cut(s) 80, 388
HpaII CCGG 2 cut(s) 184, 425
Hpy166II GTNNAC 2 cut(s) 121, 256
Hpy188I TCNGA 1 cut(s) 315
Hpy188III TCNNGA 3 cut(s) 77, 322, 425
Hpy8I GTNNAC 2 cut(s) 121, 256
Hpy99I CGWCG 1 cut(s) 149
HpyCH4III ACNGT 2 cut(s) 229, 352
HpyCH4IV ACGT 2 cut(s) 144, 192
HpyCH4V TGCA 2 cut(s) 128, 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 196
HpyF3I CTNAG 2 cut(s) 9, 381
HpySE526I ACGT 2 cut(s) 144, 192
Hsp92II CATG 2 cut(s) 158, 364
HspAI GCGC 1 cut(s) 36
Kpn2I TCCGGA 1 cut(s) 424
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 1 cut(s) 363
LguI GCTCTTC 1 cut(s) 26
Lsp1109I GCAGC 1 cut(s) 289
MaeII ACGT 2 cut(s) 144, 192
MalI GATC 1 cut(s) 365
MboI GATC 1 cut(s) 363
MboII GAAGA 5 cut(s) 25, 28, 43, 74, 443
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 129, 261, 441
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 6 cut(s) 49, 58, 100, 170, 376, 421
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 424
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 264, 402
MslI CAYNNNNRTG 1 cut(s) 469
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 184, 425
Mva1269I GAATGC 1 cut(s) 464
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 2 cut(s) 42, 196
NdeI CATATG 1 cut(s) 99
NdeII GATC 1 cut(s) 363
NlaIII CATG 2 cut(s) 158, 364
NlaIV GGNNCC 1 cut(s) 378
NspV TTCGAA 1 cut(s) 468
PciSI GCTCTTC 1 cut(s) 26
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PctI GAATGC 1 cut(s) 464
PfeI GAWTC 2 cut(s) 80, 388
PflFI GACNNNGTC 2 cut(s) 227, 251
PflMI CCANNNNNTGG 1 cut(s) 352
PkrI GCNGC 2 cut(s) 205, 304
PspN4I GGNNCC 1 cut(s) 378
PsyI GACNNNGTC 2 cut(s) 227, 251
RseI CAYNNNNRTG 1 cut(s) 469
SapI GCTCTTC 1 cut(s) 26
SaqAI TTAA 2 cut(s) 264, 402
SatI GCNGC 2 cut(s) 204, 303
Sau3AI GATC 1 cut(s) 363
SetI ASST 7 cut(s) 60, 147, 195, 201, 344, 382, 401
SfuI TTCGAA 1 cut(s) 468
SmiMI CAYNNNNRTG 1 cut(s) 469
Sse9I AATT 3 cut(s) 129, 261, 441
SsiI CCGC 5 cut(s) 38, 68, 104, 203, 437
TaaI ACNGT 2 cut(s) 229, 352
TaiI ACGT 2 cut(s) 147, 195
TaqI TCGA 3 cut(s) 54, 147, 468
TasI AATT 3 cut(s) 129, 261, 441
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 2 cut(s) 80, 388
Tru1I TTAA 2 cut(s) 264, 402
Tru9I TTAA 2 cut(s) 264, 402
TscAI CASTG 1 cut(s) 13
TseI GCWGC 1 cut(s) 302
TspRI CASTG 1 cut(s) 13
Tth111I GACNNNGTC 2 cut(s) 227, 251
Van91I CCANNNNNTGG 1 cut(s) 352
XapI RAATTY 1 cut(s) 441
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.