RLG00000015363

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000457
Physical Location & Seq
Reverse (-)
65044631 .. 65046900
2270 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015363

Sequence Viewer

Length: 441 bp
ATGGAGGACGGCTGCGCCGATAATGCCATCCCATTGACCGGCGTCATCCTTGCCAAAGTCATCGAGTACTTGAAGAAGCACGCTGAGGGCAAGGAAGGCAAGGATAAGAAGAAGTCTCTCAAGAGATTCGACGCCGATTTCGTCGACGTCGAGCAGTCCGTCCTGATTGATCTGATATTGGCAGCAGATCGTCTGAAAATCAAGAAGCTGTGGGACTTGACATGCCAGACTGTGGCGGATAAGTATCCGCTGTTTCATGAGGTTTTCGACATCATGATGAATGACTTCACTCCTGAAGAAGATGTTATTCGAATTGGGCCGGCATTTGAAAAAGCCCAACGGATTCCTCTATCGAAACGTCGTCGCTTCCTGAAGGATTTCTCTTTCAATACTCGGGCGCCATTGCTGAAACCCTCCACTCGACCACTTGAGGACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

147

Amino Acids

16.87

Weight (kDa)

7.73

Isoelectric Point (pI)

33.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 150
AccB1I GGYRCC 1 cut(s) 397
AccB7I CCANNNNNTGG 1 cut(s) 232
AccI GTMKAC 1 cut(s) 144
AciI CCGC 2 cut(s) 236, 248
AcuI CTGAAG 2 cut(s) 315, 392
AcyI GRCGYC 4 cut(s) 42, 132, 147, 398
AfaI GTAC 1 cut(s) 68
AfiI CCNNNNNNNGG 2 cut(s) 38, 232
AgsI TTSAA 3 cut(s) 73, 329, 388
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 120
Ama87I CYCGRG 1 cut(s) 393
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 2 cut(s) 12, 182
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
Asp700I GAANNNNTTC 2 cut(s) 284, 377
AspLEI GCGC 2 cut(s) 17, 400
AspS9I GGNCC 1 cut(s) 317
AsuII TTCGAA 1 cut(s) 310
AvaI CYCGRG 1 cut(s) 393
BanI GGYRCC 1 cut(s) 397
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 194
BccI CCATC 1 cut(s) 35
BceAI ACGGC 1 cut(s) 25
BciVI GTATCC 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 120
BfoI RGCGCY 1 cut(s) 401
BfuI GTATCC 1 cut(s) 255
BisI GCNGC 2 cut(s) 13, 183
BlsI GCNGC 2 cut(s) 14, 184
BmcAI AGTACT 1 cut(s) 68
BmeT110I CYCGRG 1 cut(s) 393
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 399
BoxI GACNNNNGTC 1 cut(s) 41
Bpu10I CCTNAGC 1 cut(s) 84
Bpu14I TTCGAA 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 104
BsaBI GATNNNNATC 1 cut(s) 243
BsaHI GRCGYC 4 cut(s) 42, 132, 147, 398
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 232
Bse118I RCCGGY 2 cut(s) 38, 319
Bse1I ACTGG 1 cut(s) 440
Bse3DI GCAATG 1 cut(s) 401
Bse8I GATNNNNATC 1 cut(s) 243
BseGI GGATG 2 cut(s) 27, 45
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 2 cut(s) 38, 232
BseMI GCAATG 1 cut(s) 401
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 440
BseXI GCAGC 1 cut(s) 194
BshFI GGCC 1 cut(s) 319
BshNI GGYRCC 1 cut(s) 397
BsiHKCI CYCGRG 1 cut(s) 393
BsiSI CCGG 2 cut(s) 39, 320
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 2 cut(s) 38, 232
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 1 cut(s) 319
BsoBI CYCGRG 1 cut(s) 393
Bsp119I TTCGAA 1 cut(s) 310
Bsp143I GATC 2 cut(s) 169, 187
BspACI CCGC 2 cut(s) 236, 248
BspANI GGCC 1 cut(s) 319
BspCNI CTCAG 1 cut(s) 76
BspHI TCATGA 2 cut(s) 256, 273
BspLI GGNNCC 1 cut(s) 399
BspT104I TTCGAA 1 cut(s) 310
BspT107I GGYRCC 1 cut(s) 397
BsrDI GCAATG 1 cut(s) 401
BsrFI RCCGGY 2 cut(s) 38, 319
BsrI ACTGG 1 cut(s) 440
BssAI RCCGGY 2 cut(s) 38, 319
BssMI GATC 2 cut(s) 169, 187
BssNI GRCGYC 4 cut(s) 42, 132, 147, 398
Bst4CI ACNGT 1 cut(s) 232
BstACI GRCGYC 4 cut(s) 42, 132, 147, 398
BstBI TTCGAA 1 cut(s) 310
BstC8I GCNNGC 2 cut(s) 81, 321
BstDEI CTNAG 1 cut(s) 84
BstF5I GGATG 2 cut(s) 27, 45
BstH2I RGCGCY 1 cut(s) 401
BstHHI GCGC 2 cut(s) 17, 400
BstKTI GATC 2 cut(s) 172, 190
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 2 cut(s) 169, 187
BstMWI GCNNNNNNNGC 2 cut(s) 23, 96
BstNSI RCATGY 1 cut(s) 225
BstPAI GACNNNNGTC 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 194
BsuI GTATCC 1 cut(s) 255
BsuRI GGCC 1 cut(s) 319
BtsCI GGATG 2 cut(s) 27, 45
Cac8I GCNNGC 2 cut(s) 81, 321
CciI TCATGA 2 cut(s) 256, 273
CfoI GCGC 2 cut(s) 17, 400
Cfr10I RCCGGY 2 cut(s) 38, 319
Cfr13I GGNCC 1 cut(s) 317
CseI GACGC 2 cut(s) 31, 140
Csp6I GTAC 1 cut(s) 67
CviAII CATG 3 cut(s) 222, 257, 274
CviJI RGCY 4 cut(s) 12, 208, 319, 335
CviKI_1 RGCY 4 cut(s) 12, 208, 319, 335
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 1 cut(s) 84
DinI GGCGCC 1 cut(s) 399
DpnI GATC 2 cut(s) 171, 189
DpnII GATC 2 cut(s) 169, 187
EciI GGCGGA 1 cut(s) 251
Eco57I CTGAAG 2 cut(s) 315, 392
Eco88I CYCGRG 1 cut(s) 393
EgeI GGCGCC 1 cut(s) 399
EheI GGCGCC 1 cut(s) 399
FaeI CATG 3 cut(s) 225, 260, 277
FaiI YATR 3 cut(s) 223, 258, 275
FaqI GGGAC 1 cut(s) 227
FatI CATG 3 cut(s) 221, 256, 273
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 13, 183
FokI GGATG 2 cut(s) 14, 32
Fsp4HI GCNGC 2 cut(s) 13, 183
GlaI GCGC 2 cut(s) 16, 399
GluI GCNGC 2 cut(s) 13, 183
HaeII RGCGCY 1 cut(s) 401
HaeIII GGCC 1 cut(s) 319
HapII CCGG 2 cut(s) 39, 320
HgaI GACGC 2 cut(s) 31, 140
HhaI GCGC 2 cut(s) 17, 400
Hin1I GRCGYC 4 cut(s) 42, 132, 147, 398
Hin1II CATG 3 cut(s) 225, 260, 277
Hin6I GCGC 2 cut(s) 15, 398
HinP1I GCGC 2 cut(s) 15, 398
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 2 cut(s) 126, 343
HpaII CCGG 2 cut(s) 39, 320
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 174, 195
Hpy188III TCNNGA 7 cut(s) 121, 163, 202, 257, 274, 293, 370
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 6 cut(s) 134, 146, 149, 152, 363, 366
HpyAV CCTTC 2 cut(s) 89, 367
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4IV ACGT 2 cut(s) 147, 358
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 96
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 2 cut(s) 147, 358
Hsp92I GRCGYC 4 cut(s) 42, 132, 147, 398
Hsp92II CATG 3 cut(s) 225, 260, 277
HspAI GCGC 2 cut(s) 15, 398
KasI GGCGCC 1 cut(s) 397
KroI GCCGGC 1 cut(s) 319
KroNI GCCGGC 1 cut(s) 321
Kzo9I GATC 2 cut(s) 169, 187
LpnPI CCDG 7 cut(s) 52, 176, 239, 306, 333, 383, 421
Lsp1109I GCAGC 1 cut(s) 194
MaeII ACGT 2 cut(s) 147, 358
MalI GATC 2 cut(s) 171, 189
MboI GATC 2 cut(s) 169, 187
MboII GAAGA 4 cut(s) 85, 121, 308, 311
MluCI AATT 1 cut(s) 312
Mly113I GGCGCC 1 cut(s) 398
MnlI CCTC 5 cut(s) 79, 253, 357, 424, 424
MroNI GCCGGC 1 cut(s) 319
MroXI GAANNNNTTC 2 cut(s) 284, 377
MslI CAYNNNNRTG 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 250
MspI CCGG 2 cut(s) 39, 320
MwoI GCNNNNNNNGC 2 cut(s) 23, 96
NaeI GCCGGC 1 cut(s) 321
NarI GGCGCC 1 cut(s) 398
NdeII GATC 2 cut(s) 169, 187
NgoMIV GCCGGC 1 cut(s) 319
NlaIII CATG 3 cut(s) 225, 260, 277
NlaIV GGNNCC 1 cut(s) 399
NspI RCATGY 1 cut(s) 225
NspV TTCGAA 1 cut(s) 310
PagI TCATGA 2 cut(s) 256, 273
PcsI WCGNNNNNNNCGW 4 cut(s) 15, 138, 147, 156
PdiI GCCGGC 1 cut(s) 321
PdmI GAANNNNTTC 2 cut(s) 284, 377
PfeI GAWTC 2 cut(s) 126, 343
PflMI CCANNNNNTGG 1 cut(s) 232
PkrI GCNGC 2 cut(s) 14, 184
PluTI GGCGCC 1 cut(s) 401
PshAI GACNNNNGTC 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 399
PspPI GGNCC 1 cut(s) 317
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 275
SalI GTCGAC 1 cut(s) 143
SatI GCNGC 2 cut(s) 13, 183
Sau3AI GATC 2 cut(s) 169, 187
Sau96I GGNCC 1 cut(s) 317
ScaI AGTACT 1 cut(s) 68
SetI ASST 4 cut(s) 150, 210, 264, 361
SfoI GGCGCC 1 cut(s) 399
SfuI TTCGAA 1 cut(s) 310
SgrDI CGTCGACG 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 2 cut(s) 119, 428
SmoI CTYRAG 2 cut(s) 119, 428
Sse9I AATT 1 cut(s) 312
SsiI CCGC 2 cut(s) 236, 248
SspDI GGCGCC 1 cut(s) 397
TaaI ACNGT 1 cut(s) 232
TaiI ACGT 2 cut(s) 150, 361
TaqI TCGA 8 cut(s) 63, 129, 144, 150, 267, 310, 353, 421
TasI AATT 1 cut(s) 312
TatI WGTACW 1 cut(s) 66
TfiI GAWTC 2 cut(s) 126, 343
TseI GCWGC 2 cut(s) 12, 182
TspDTI ATGAA 2 cut(s) 245, 293
TspGWI ACGGA 2 cut(s) 148, 355
Van91I CCANNNNNTGG 1 cut(s) 232
XceI RCATGY 1 cut(s) 225
XcmI CCANNNNNNNNNTGG 1 cut(s) 432
XmiI GTMKAC 1 cut(s) 144
XmnI GAANNNNTTC 2 cut(s) 284, 377
ZraI GACGTC 1 cut(s) 148
ZrmI AGTACT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.