Rmu_sc0001719.1_g000014

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001719.1
OG0000457
Physical Location & Seq
Forward (+)
69223 .. 69711
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001719.1_g000014.1.cds

Sequence Viewer

Length: 489 bp
atgtcgactgaaattgggaacaagaagctaaccctgaccagcttcgacggacataaattcgagattagagaggcggttgcccttgaatcgcagaccatcaagcacatggtggaagacggctgcgccgataatgcgatccccttgccgaacgtcaccggcgtcatccttgccaaggtcatcgagtactgccagaggcacgttgaggacaaggaaagcaagaatgaagacaataagatggatcaggaggagcctctcaagaaattcgacgcagagttcgtgaaagtcgaccagggcgtcctgttcgatctgataatggcagcaaactatctgaacatcaaggggctgctggacttgacatgccagactgtggcagacatgataaagggaaagactcccgaagagattcgcaagactttcaacatcaagaatgacttcactcctcaggaagaagaggaggttcgaagggagaaccaatgggcttttgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

162

Amino Acids

18.57

Weight (kDa)

4.82

Isoelectric Point (pI)

52.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 293
AccB7I CCANNNNNTGG 1 cut(s) 367
AccI GTMKAC 2 cut(s) 5, 285
AciI CCGC 1 cut(s) 74
AclWI GGATC 2 cut(s) 130, 246
AcsI RAATTY 2 cut(s) 56, 260
AcyI GRCGYC 2 cut(s) 159, 294
AdeI CACNNNGTG 1 cut(s) 109
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 2 cut(s) 172, 367
AgsI TTSAA 2 cut(s) 86, 418
AjnI CCWGG 1 cut(s) 288
AluBI AGCT 2 cut(s) 28, 42
AluI AGCT 2 cut(s) 28, 42
AlwI GGATC 2 cut(s) 130, 246
ApeKI GCWGC 3 cut(s) 120, 317, 343
ApoI RAATTY 2 cut(s) 56, 260
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
Asp700I GAANNNNTTC 2 cut(s) 402, 431
AspLEI GCGC 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 145
AsuII TTCGAA 1 cut(s) 460
AxyI CCTNAGG 1 cut(s) 441
BbsI GAAGAC 2 cut(s) 120, 231
BbvI GCAGC 3 cut(s) 107, 329, 330
BccI CCATC 2 cut(s) 104, 229
BceAI ACGGC 1 cut(s) 133
BcgI CGANNNNNNTGC 2 cut(s) 124, 158
BciT130I CCWGG 1 cut(s) 290
BisI GCNGC 3 cut(s) 121, 318, 344
BlsI GCNGC 3 cut(s) 122, 319, 345
BmcAI AGTACT 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 290
BpiI GAAGAC 2 cut(s) 120, 231
Bpu14I TTCGAA 1 cut(s) 460
BpuEI CTTGAG 1 cut(s) 239
BsaHI GRCGYC 2 cut(s) 159, 294
BsaJI CCNNGG 2 cut(s) 171, 289
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 367
Bse118I RCCGGY 1 cut(s) 155
Bse21I CCTNAGG 1 cut(s) 441
BseBI CCWGG 1 cut(s) 290
BseDI CCNNGG 2 cut(s) 171, 289
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 172, 367
BseMII CTCAG 1 cut(s) 455
BseRI GAGGAG 3 cut(s) 260, 429, 467
BseXI GCAGC 3 cut(s) 107, 329, 330
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 2 cut(s) 172, 367
Bsp119I TTCGAA 1 cut(s) 460
Bsp143I GATC 3 cut(s) 135, 238, 304
BspACI CCGC 1 cut(s) 74
BspCNI CTCAG 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 249
BspPI GGATC 2 cut(s) 130, 246
BspT104I TTCGAA 1 cut(s) 460
BsrFI RCCGGY 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 171, 289
BssMI GATC 3 cut(s) 135, 238, 304
BssNI GRCGYC 2 cut(s) 159, 294
BssT1I CCWWGG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 2 cut(s) 393, 444
BstACI GRCGYC 2 cut(s) 159, 294
BstBI TTCGAA 1 cut(s) 460
BstDEI CTNAG 1 cut(s) 441
BstENI CCTNNNNNAGG 1 cut(s) 170
BstF5I GGATG 1 cut(s) 162
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 3 cut(s) 138, 241, 307
BstMBI GATC 3 cut(s) 135, 238, 304
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 290
BstNSI RCATGY 1 cut(s) 360
BstSCI CCNGG 1 cut(s) 288
BstV1I GCAGC 3 cut(s) 107, 329, 330
BstV2I GAAGAC 2 cut(s) 120, 231
Bsu36I CCTNAGG 1 cut(s) 441
BtsCI GGATG 1 cut(s) 162
CfoI GCGC 1 cut(s) 125
Cfr10I RCCGGY 1 cut(s) 155
CseI GACGC 3 cut(s) 148, 275, 283
Csp6I GTAC 1 cut(s) 184
CviAII CATG 3 cut(s) 106, 357, 376
CviJI RGCY 6 cut(s) 28, 42, 120, 250, 343, 479
CviKI_1 RGCY 6 cut(s) 28, 42, 120, 250, 343, 479
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 441
DpnI GATC 3 cut(s) 137, 240, 306
DpnII GATC 3 cut(s) 135, 238, 304
DraIII CACNNNGTG 1 cut(s) 109
DrdI GACNNNNNNGTC 1 cut(s) 293
DseDI GACNNNNNNGTC 1 cut(s) 293
Eam1104I CTCTTC 2 cut(s) 393, 444
EarI CTCTTC 2 cut(s) 393, 444
Eco130I CCWWGG 1 cut(s) 171
Eco81I CCTNAGG 1 cut(s) 441
EcoNI CCTNNNNNAGG 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 3 cut(s) 109, 360, 379
FaiI YATR 4 cut(s) 54, 107, 358, 377
FalI AAGNNNNNCTT 2 cut(s) 416, 448
FatI CATG 3 cut(s) 105, 356, 375
FblI GTMKAC 2 cut(s) 5, 285
Fnu4HI GCNGC 3 cut(s) 121, 318, 344
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 3 cut(s) 121, 318, 344
GlaI GCGC 1 cut(s) 124
GluI GCNGC 3 cut(s) 121, 318, 344
HapII CCGG 1 cut(s) 156
HgaI GACGC 3 cut(s) 148, 275, 283
HhaI GCGC 1 cut(s) 125
Hin1I GRCGYC 2 cut(s) 159, 294
Hin1II CATG 3 cut(s) 109, 360, 379
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HincII GTYRAC 2 cut(s) 6, 286
HindII GTYRAC 2 cut(s) 6, 286
HinfI GANTC 3 cut(s) 86, 391, 403
HpaII CCGG 1 cut(s) 156
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 2 cut(s) 6, 286
Hpy188I TCNGA 2 cut(s) 309, 330
Hpy188III TCNNGA 7 cut(s) 61, 242, 256, 277, 395, 424, 443
Hpy8I GTNNAC 2 cut(s) 6, 286
Hpy99I CGWCG 2 cut(s) 50, 269
HpyAV CCTTC 1 cut(s) 456
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 2 cut(s) 150, 198
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 441
HpySE526I ACGT 2 cut(s) 150, 198
Hsp92I GRCGYC 2 cut(s) 159, 294
Hsp92II CATG 3 cut(s) 109, 360, 379
HspAI GCGC 1 cut(s) 123
Kzo9I GATC 3 cut(s) 135, 238, 304
LmnI GCTCC 1 cut(s) 247
Lsp1109I GCAGC 3 cut(s) 107, 329, 330
MaeII ACGT 2 cut(s) 150, 198
MaeIII GTNAC 1 cut(s) 151
MalI GATC 3 cut(s) 137, 240, 306
MboI GATC 3 cut(s) 135, 238, 304
MboII GAAGA 5 cut(s) 125, 236, 410, 458, 461
MluCI AATT 3 cut(s) 12, 56, 260
MlyI GAGTC 1 cut(s) 385
MnlI CCTC 8 cut(s) 64, 186, 196, 238, 261, 445, 448, 450
MroXI GAANNNNTTC 2 cut(s) 402, 431
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 290
MvaI CCWGG 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 3 cut(s) 135, 238, 304
NlaIII CATG 3 cut(s) 109, 360, 379
NlaIV GGNNCC 1 cut(s) 249
NmuCI GTSAC 1 cut(s) 151
NspI RCATGY 1 cut(s) 360
NspV TTCGAA 1 cut(s) 460
PcsI WCGNNNNNNNCGW 5 cut(s) 123, 156, 273, 282, 291
PdmI GAANNNNTTC 2 cut(s) 402, 431
PfeI GAWTC 2 cut(s) 86, 403
PflMI CCANNNNNTGG 1 cut(s) 367
PkrI GCNGC 3 cut(s) 122, 319, 345
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Psp6I CCWGG 1 cut(s) 288
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 1 cut(s) 249
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SalI GTCGAC 2 cut(s) 4, 284
SatI GCNGC 3 cut(s) 121, 318, 344
Sau3AI GATC 3 cut(s) 135, 238, 304
ScaI AGTACT 1 cut(s) 185
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 290
SetI ASST 6 cut(s) 30, 44, 153, 177, 201, 459
SfuI TTCGAA 1 cut(s) 460
SgrAI CRCCGGYG 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 3 cut(s) 12, 56, 260
SsiI CCGC 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 288
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 2 cut(s) 153, 201
TaqI TCGA 8 cut(s) 5, 45, 60, 180, 264, 285, 303, 460
TasI AATT 3 cut(s) 12, 56, 260
TatI WGTACW 1 cut(s) 183
TfiI GAWTC 2 cut(s) 86, 403
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 3 cut(s) 120, 317, 343
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 1 cut(s) 237
TspGWI ACGGA 1 cut(s) 63
Van91I CCANNNNNTGG 1 cut(s) 367
XagI CCTNNNNNAGG 1 cut(s) 170
XapI RAATTY 2 cut(s) 56, 260
XceI RCATGY 1 cut(s) 360
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XmiI GTMKAC 2 cut(s) 5, 285
XmnI GAANNNNTTC 2 cut(s) 402, 431
ZrmI AGTACT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.