Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000457

Physical Location & Seq

Genomic Coordinates Reverse (-)

16480008 .. 16480616

Gene Structure 609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTCTTCGAAGATGATCGTGTTGATGAGCTCCGATGGTCAGTCGTTTGAGGTGGAAGAAGCGGTAGCAATCCAATCGCAGACCATAGCGCATATGGTTGAAGACGATTGCGTTGCTGATGGAATCCCTCTTGCAAACGTGGAAAGCAAGATTCTTGTGAAAGTGATCGAGTACTGCAAGAAATACCACGTCGACGAGGCTAATCCTATCTCTGAAGAGGATCTCAACAAGTGGGACGAGAAGTTCATGGATCTCGAACAATCCACCATCTTTGAACTCATCCTTGCTGCGAATTACCTCAACATAAAAAGCTTGTTTGATCTCACATGCCAAACTGTTGCGGACATGATCAAAGGCAAGACTCCAGAGGAGATTCGTTCAACTTTCAACATTGAGAATGATTTTACACCTGAGGAAGAAGAAGCTGTTCGTAAGGAGAATCAATGGGCTTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0019538 GO:0019941 GO:0030163 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

152

Amino Acids

17.36

Weight (kDa)

4.3

Isoelectric Point (pI)

63.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	4 - 64	5.5e-30	Skp1 family, tetramerisation domain
Skp1	PF01466	103 - 150	1.5e-30	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca	FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica	MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica	Prupe.8G166100_v2.0.a1
pyrus_communis	pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis	RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata	RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora	Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa	Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha	Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana	Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	2 cut(s)	62, 341
AclWI	GGATC	2 cut(s)	228, 258
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	1 cut(s)	173
AgsI	TTSAA	5 cut(s)	101, 275, 381, 388, 455
AjiI	CACGTC	1 cut(s)	190
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	3 cut(s)	30, 312, 425
AluI	AGCT	3 cut(s)	30, 312, 425
Alw21I	GWGCWC	1 cut(s)	32
AlwI	GGATC	2 cut(s)	228, 258
ApeKI	GCWGC	1 cut(s)	287
Asp700I	GAANNNNTTC	1 cut(s)	426
AspLEI	GCGC	1 cut(s)	91
AsuII	TTCGAA	1 cut(s)	8
AxyI	CCTNAGG	1 cut(s)	411
BanII	GRGCYC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	3 cut(s)	29, 113, 275
BcgI	CGANNNNNNTGC	4 cut(s)	57, 91, 95, 129
BclI	TGATCA	1 cut(s)	348
BisI	GCNGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	289
BmcAI	AGTACT	1 cut(s)	173
BmgBI	CACGTC	1 cut(s)	190
BpiI	GAAGAC	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	348
Bpu14I	TTCGAA	1 cut(s)	8
Bse21I	CCTNAGG	1 cut(s)	411
BseGI	GGATG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	402
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	248
Bsp119I	TTCGAA	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	6 cut(s)	15, 165, 220, 250, 319, 348
BspACI	CCGC	2 cut(s)	62, 341
BspCNI	CTCAG	1 cut(s)	403
BspPI	GGATC	2 cut(s)	228, 258
BspT104I	TTCGAA	1 cut(s)	8
BssMI	GATC	6 cut(s)	15, 165, 220, 250, 319, 348
Bst4CI	ACNGT	1 cut(s)	337
Bst6I	CTCTTC	1 cut(s)	210
BstBI	TTCGAA	1 cut(s)	8
BstDEI	CTNAG	1 cut(s)	411
BstF5I	GGATG	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	6 cut(s)	18, 168, 223, 253, 322, 351
BstMBI	GATC	6 cut(s)	15, 165, 220, 250, 319, 348
BstNSI	RCATGY	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	274
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	2 cut(s)	220, 250
BstYI	RGATCY	2 cut(s)	220, 250
Bsu36I	CCTNAGG	1 cut(s)	411
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	279
CfoI	GCGC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	172
CspCI	CAANNNNNGTGG	2 cut(s)	253, 288
CviAII	CATG	3 cut(s)	247, 327, 346
CviJI	RGCY	5 cut(s)	30, 200, 312, 425, 449
CviKI_1	RGCY	5 cut(s)	30, 200, 312, 425, 449
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	6 cut(s)	17, 167, 222, 252, 321, 350
DpnII	GATC	6 cut(s)	15, 165, 220, 250, 319, 348
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Ecl136II	GAGCTC	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	234
Eco81I	CCTNAGG	1 cut(s)	411
EcoICRI	GAGCTC	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	32
FaeI	CATG	3 cut(s)	250, 330, 349
FaiI	YATR	7 cut(s)	86, 93, 95, 248, 305, 328, 347
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	3 cut(s)	246, 326, 345
FauNDI	CATATG	1 cut(s)	93
FbaI	TGATCA	1 cut(s)	348
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	288
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	288
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	288
GsuI	CTGGAG	1 cut(s)	348
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	3 cut(s)	250, 330, 349
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HindIII	AAGCTT	1 cut(s)	310
HinfI	GANTC	5 cut(s)	123, 151, 361, 373, 439
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	34, 214
Hpy188III	TCNNGA	2 cut(s)	254, 365
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	2 cut(s)	194, 197
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	2 cut(s)	138, 189
HpyCH4V	TGCA	2 cut(s)	134, 177
HpyF3I	CTNAG	1 cut(s)	411
HpySE526I	ACGT	2 cut(s)	138, 189
Hsp92II	CATG	3 cut(s)	250, 330, 349
HspAI	GCGC	1 cut(s)	89
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	6 cut(s)	15, 165, 220, 250, 319, 348
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	2 cut(s)	378, 423
Lsp1109I	GCAGC	1 cut(s)	274
MaeII	ACGT	2 cut(s)	138, 189
MalI	GATC	6 cut(s)	17, 167, 222, 252, 321, 350
MboI	GATC	6 cut(s)	15, 165, 220, 250, 319, 348
MboII	GAAGA	6 cut(s)	22, 68, 113, 227, 428, 431
MflI	RGATCY	2 cut(s)	220, 250
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	1 cut(s)	292
MlyI	GAGTC	1 cut(s)	355
MnlI	CCTC	7 cut(s)	43, 138, 190, 211, 308, 361, 406
MroXI	GAANNNNTTC	1 cut(s)	426
NdeI	CATATG	1 cut(s)	93
NdeII	GATC	6 cut(s)	15, 165, 220, 250, 319, 348
NlaIII	CATG	3 cut(s)	250, 330, 349
NspI	RCATGY	1 cut(s)	330
NspV	TTCGAA	1 cut(s)	8
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	4 cut(s)	123, 151, 373, 439
PkrI	GCNGC	1 cut(s)	289
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
Psp124BI	GAGCTC	1 cut(s)	32
PsuI	RGATCY	2 cut(s)	220, 250
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SacI	GAGCTC	1 cut(s)	32
SalI	GTCGAC	1 cut(s)	191
SatI	GCNGC	1 cut(s)	288
Sau3AI	GATC	6 cut(s)	15, 165, 220, 250, 319, 348
ScaI	AGTACT	1 cut(s)	173
SchI	GAGTC	1 cut(s)	355
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	8 cut(s)	32, 54, 141, 192, 300, 314, 412, 427
SfuI	TTCGAA	1 cut(s)	8
SgrDI	CGTCGACG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	292
SsiI	CCGC	2 cut(s)	62, 341
SstI	GAGCTC	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	2 cut(s)	141, 192
TaqI	TCGA	4 cut(s)	8, 168, 192, 255
TasI	AATT	1 cut(s)	292
TatI	WGTACW	1 cut(s)	171
TfiI	GAWTC	4 cut(s)	123, 151, 373, 439
TseI	GCWGC	1 cut(s)	287
TspDTI	ATGAA	1 cut(s)	235
XceI	RCATGY	1 cut(s)	330
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	426
ZrmI	AGTACT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.