Rh6AG024200

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000457
Physical Location & Seq
Reverse (-)
2820522 .. 2821004
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG024200.1

Sequence Viewer

Length: 483 bp
ATGTCGACTGAGAACAAGAAGCTAATCCTGAACAGCTCCGACGGAAAGCAATTTGAGATTGATGAGGCTGTTGGTCTAGAATCGCAGACCATCAAGCACATGGTGGAGGACGGCTGCGCTGATAATGCGATCCCCTTGCCGAACGTCTCCGGCAGAATCCTAGCCAAGGTCATCGAGTACTGCAACAGGCACGTTGAGGACAAGGAAAGCAAGAATGAAGACAATAAGAATGAGAAGGAGGAGTCTCTTGAGAAATTCGACGCAGAGTTCGTGAAAGTCGACCAGAACGTCCTGTTCGATCTGATACTGGCAGCAAACTATCTGAACATCAAGGGGCTGCTGGACTTGACATGCCAGACTGTGGCAGACATGATAAAGGGAAAGACTCCCGAAGAGATTCGCAAGACTTTCAACATCGAGAATGACTTCACTCCTGAGGAAGAAGAGGAGGTTCGAAGGGAGAACCAATGGGCTTTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

160

Amino Acids

18.34

Weight (kDa)

4.54

Isoelectric Point (pI)

56.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 6 - 65 9e-26 Skp1 family, tetramerisation domain
Skp1 PF01466 111 - 158 3.6e-32 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 287
AccB7I CCANNNNNTGG 1 cut(s) 361
AccI GTMKAC 2 cut(s) 5, 279
AclWI GGATC 1 cut(s) 124
AcsI RAATTY 1 cut(s) 254
AdeI CACNNNGTG 1 cut(s) 103
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 2 cut(s) 166, 361
AgsI TTSAA 1 cut(s) 412
AluBI AGCT 2 cut(s) 22, 36
AluI AGCT 2 cut(s) 22, 36
Alw26I GTCTC 2 cut(s) 151, 249
AlwI GGATC 1 cut(s) 124
ApeKI GCWGC 3 cut(s) 114, 311, 337
ApoI RAATTY 1 cut(s) 254
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
Asp700I GAANNNNTTC 2 cut(s) 396, 425
AspLEI GCGC 1 cut(s) 119
AsuII TTCGAA 1 cut(s) 454
AxyI CCTNAGG 1 cut(s) 435
BbsI GAAGAC 1 cut(s) 225
BbvI GCAGC 3 cut(s) 101, 323, 324
BccI CCATC 1 cut(s) 98
BceAI ACGGC 1 cut(s) 127
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BcoDI GTCTC 2 cut(s) 151, 249
BfaI CTAG 2 cut(s) 77, 161
BisI GCNGC 3 cut(s) 115, 312, 338
BlsI GCNGC 3 cut(s) 116, 313, 339
BmcAI AGTACT 1 cut(s) 179
BpiI GAAGAC 1 cut(s) 225
Bpu14I TTCGAA 1 cut(s) 454
BpuEI CTTGAG 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 165
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 361
Bse1I ACTGG 1 cut(s) 312
Bse21I CCTNAGG 1 cut(s) 435
BseDI CCNNGG 1 cut(s) 165
BseLI CCNNNNNNNGG 2 cut(s) 166, 361
BseMII CTCAG 1 cut(s) 426
BseNI ACTGG 1 cut(s) 312
BseRI GAGGAG 2 cut(s) 254, 461
BseXI GCAGC 3 cut(s) 101, 323, 324
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 2 cut(s) 166, 361
BsmAI GTCTC 2 cut(s) 151, 249
BsmBI CGTCTC 1 cut(s) 151
Bsp119I TTCGAA 1 cut(s) 454
Bsp143I GATC 2 cut(s) 129, 298
BspCNI CTCAG 1 cut(s) 427
BspPI GGATC 1 cut(s) 124
BspT104I TTCGAA 1 cut(s) 454
BsrI ACTGG 1 cut(s) 312
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 2 cut(s) 129, 298
BssT1I CCWWGG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 2 cut(s) 387, 438
BstBI TTCGAA 1 cut(s) 454
BstDEI CTNAG 2 cut(s) 9, 435
BstENI CCTNNNNNAGG 1 cut(s) 164
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 2 cut(s) 132, 301
BstMAI GTCTC 2 cut(s) 151, 249
BstMBI GATC 2 cut(s) 129, 298
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNSI RCATGY 1 cut(s) 354
BstV1I GCAGC 3 cut(s) 101, 323, 324
BstV2I GAAGAC 1 cut(s) 225
Bsu36I CCTNAGG 1 cut(s) 435
CfoI GCGC 1 cut(s) 119
CseI GACGC 1 cut(s) 269
Csp6I GTAC 1 cut(s) 178
CviAII CATG 3 cut(s) 100, 351, 370
CviJI RGCY 7 cut(s) 22, 36, 68, 114, 164, 337, 473
CviKI_1 RGCY 7 cut(s) 22, 36, 68, 114, 164, 337, 473
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 2 cut(s) 9, 435
DpnI GATC 2 cut(s) 131, 300
DpnII GATC 2 cut(s) 129, 298
DraIII CACNNNGTG 1 cut(s) 103
DrdI GACNNNNNNGTC 1 cut(s) 287
DseDI GACNNNNNNGTC 1 cut(s) 287
Eam1104I CTCTTC 2 cut(s) 387, 438
EarI CTCTTC 2 cut(s) 387, 438
Eco130I CCWWGG 1 cut(s) 165
Eco81I CCTNAGG 1 cut(s) 435
EcoNI CCTNNNNNAGG 1 cut(s) 164
EcoT14I CCWWGG 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 165
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 3 cut(s) 103, 354, 373
FaiI YATR 3 cut(s) 101, 352, 371
FatI CATG 3 cut(s) 99, 350, 369
FblI GTMKAC 2 cut(s) 5, 279
Fnu4HI GCNGC 3 cut(s) 115, 312, 338
Fsp4HI GCNGC 3 cut(s) 115, 312, 338
FspBI CTAG 2 cut(s) 77, 161
GlaI GCGC 1 cut(s) 118
GluI GCNGC 3 cut(s) 115, 312, 338
HapII CCGG 1 cut(s) 150
HgaI GACGC 1 cut(s) 269
HhaI GCGC 1 cut(s) 119
Hin1II CATG 3 cut(s) 103, 354, 373
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 2 cut(s) 6, 280
HindII GTYRAC 2 cut(s) 6, 280
HinfI GANTC 5 cut(s) 80, 156, 242, 385, 397
HpaII CCGG 1 cut(s) 150
Hpy166II GTNNAC 2 cut(s) 6, 280
Hpy188I TCNGA 3 cut(s) 40, 303, 324
Hpy188III TCNNGA 7 cut(s) 28, 77, 248, 271, 389, 418, 434
Hpy8I GTNNAC 2 cut(s) 6, 280
Hpy99I CGWCG 2 cut(s) 44, 263
HpyAV CCTTC 2 cut(s) 229, 450
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4IV ACGT 3 cut(s) 144, 192, 288
HpyCH4V TGCA 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 2 cut(s) 9, 435
HpySE526I ACGT 3 cut(s) 144, 192, 288
Hsp92II CATG 3 cut(s) 103, 354, 373
HspAI GCGC 1 cut(s) 117
Kzo9I GATC 2 cut(s) 129, 298
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 9 cut(s) 41, 163, 172, 293, 296, 305, 326, 368, 447
Lsp1109I GCAGC 3 cut(s) 101, 323, 324
MaeI CTAG 2 cut(s) 77, 161
MaeII ACGT 3 cut(s) 144, 192, 288
MalI GATC 2 cut(s) 131, 300
MboI GATC 2 cut(s) 129, 298
MboII GAAGA 4 cut(s) 230, 404, 452, 455
MluCI AATT 2 cut(s) 50, 254
MlyI GAGTC 2 cut(s) 251, 379
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 7 cut(s) 58, 100, 190, 232, 430, 439, 442
MroXI GAANNNNTTC 2 cut(s) 396, 425
MspI CCGG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 2 cut(s) 129, 298
NlaIII CATG 3 cut(s) 103, 354, 373
NspI RCATGY 1 cut(s) 354
NspV TTCGAA 1 cut(s) 454
PcsI WCGNNNNNNNCGW 4 cut(s) 267, 276, 285, 294
PdmI GAANNNNTTC 2 cut(s) 396, 425
PfeI GAWTC 3 cut(s) 80, 156, 397
PflMI CCANNNNNTGG 1 cut(s) 361
PkrI GCNGC 3 cut(s) 116, 313, 339
PleI GAGTC 2 cut(s) 250, 379
PpsI GAGTC 2 cut(s) 250, 379
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SalI GTCGAC 2 cut(s) 4, 278
SatI GCNGC 3 cut(s) 115, 312, 338
Sau3AI GATC 2 cut(s) 129, 298
ScaI AGTACT 1 cut(s) 179
SchI GAGTC 2 cut(s) 251, 379
SetI ASST 7 cut(s) 24, 38, 147, 171, 195, 291, 453
SfuI TTCGAA 1 cut(s) 454
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 2 cut(s) 50, 254
SspMI CTAG 2 cut(s) 77, 161
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 361
TaiI ACGT 3 cut(s) 147, 195, 291
TaqI TCGA 7 cut(s) 5, 174, 258, 279, 297, 417, 454
TasI AATT 2 cut(s) 50, 254
TatI WGTACW 1 cut(s) 177
TfiI GAWTC 3 cut(s) 80, 156, 397
TseI GCWGC 3 cut(s) 114, 311, 337
TspDTI ATGAA 1 cut(s) 231
TspGWI ACGGA 1 cut(s) 57
Van91I CCANNNNNTGG 1 cut(s) 361
XagI CCTNNNNNAGG 1 cut(s) 164
XapI RAATTY 1 cut(s) 254
XbaI TCTAGA 1 cut(s) 76
XceI RCATGY 1 cut(s) 354
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XmiI GTMKAC 2 cut(s) 5, 279
XmnI GAANNNNTTC 2 cut(s) 396, 425
XspI CTAG 2 cut(s) 77, 161
ZrmI AGTACT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.