pycom05g11640

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000457
Physical Location & Seq
Forward (+)
15244637 .. 15246014
1378 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g11640.1

Sequence Viewer

Length: 498 bp
ATGGCCGCAGAGAAGAAGATGATCACCCTGAAGAGCTCCGACGGCGAGGCGTTCGAGGTCGACGAGGCGGTTGCTATGGAGTCGCAGACCATCAAGCACATGGTGGAGGACGACTGCGCAGACAATGCGATCCCTCTCCCCAACGTGACCAGCCACATCCTCGCCAAGGTCATTGAGTACTGCCGGAAGCATGTCGAGGGTCGCACGGACGGCGACAGCACCGACGTCGGCAAGATTGGCGACGAGAACACTCTCAAGAAGTTTGACGATGACTTCGTCAACGAGATTAAGGCTGATCAGAATGTTCTCTTTGACCTGATCTTGGCTGCAAACTATTTGAACATCAAGAGTCTGCTGGATCTGACCTGCCAGACCGTTGCTGACATGATCAAGGGGAAAACACCTGAAGATATCCGCAAGACTTTCAACATCAAGAATGATTTCACCCCTGAGGAGGAAGAAGAGGTTCGCAGGGAGAACCAGTGGGCTTTCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

166

Amino Acids

18.67

Weight (kDa)

4.54

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 6 - 65 9.6e-32 Skp1 family, tetramerisation domain
Skp1 PF01466 116 - 163 8.8e-31 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 228
Acc16I TGCGCA 1 cut(s) 118
Acc36I ACCTGC 1 cut(s) 374
AccI GTMKAC 1 cut(s) 60
AciI CCGC 3 cut(s) 6, 68, 415
AclWI GGATC 2 cut(s) 124, 366
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 50, 426
AcyI GRCGYC 1 cut(s) 225
AdeI CACNNNGTG 1 cut(s) 103
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 3 cut(s) 166, 322, 454
AgsI TTSAA 2 cut(s) 340, 427
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
Alw21I GWGCWC 1 cut(s) 38
AlwI GGATC 2 cut(s) 124, 366
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 326
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
Asp700I GAANNNNTTC 2 cut(s) 440, 465
AspLEI GCGC 1 cut(s) 119
AsuHPI GGTGA 2 cut(s) 16, 436
AxyI CCTNAGG 1 cut(s) 450
BanII GRGCYC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 313
BccI CCATC 1 cut(s) 98
BceAI ACGGC 2 cut(s) 58, 226
BcgI CGANNNNNNTGC 4 cut(s) 53, 87, 208, 242
BclI TGATCA 3 cut(s) 21, 295, 387
BfuAI ACCTGC 1 cut(s) 374
BisI GCNGC 2 cut(s) 6, 327
BlsI GCNGC 2 cut(s) 7, 328
BmcAI AGTACT 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 239
BsaHI GRCGYC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 165
BsaXI ACNNNNNCTCC 2 cut(s) 467, 497
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 322, 454
Bse1I ACTGG 1 cut(s) 481
Bse21I CCTNAGG 1 cut(s) 450
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 3 cut(s) 166, 322, 454
BseMII CTCAG 1 cut(s) 441
BseNI ACTGG 1 cut(s) 481
BseRI GAGGAG 1 cut(s) 467
BseXI GCAGC 1 cut(s) 313
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 38
BsiSI CCGG 1 cut(s) 184
BslI CCNNNNNNNGG 3 cut(s) 166, 322, 454
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 6 cut(s) 21, 129, 295, 318, 358, 387
BspACI CCGC 3 cut(s) 6, 68, 415
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 442
BspMI ACCTGC 1 cut(s) 374
BspPI GGATC 2 cut(s) 124, 366
BspQI GCTCTTC 1 cut(s) 26
BsrI ACTGG 1 cut(s) 481
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 6 cut(s) 21, 129, 295, 318, 358, 387
BssNI GRCGYC 1 cut(s) 225
BssT1I CCWWGG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 376
Bst6I CTCTTC 2 cut(s) 26, 456
BstACI GRCGYC 1 cut(s) 225
BstAPI GCANNNNNTGC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 450
BstENI CCTNNNNNAGG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 156
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 6 cut(s) 24, 132, 298, 321, 361, 390
BstMBI GATC 6 cut(s) 21, 129, 295, 318, 358, 387
BstMWI GCNNNNNNNGC 4 cut(s) 42, 125, 210, 237
BstNSI RCATGY 1 cut(s) 194
BstV1I GCAGC 1 cut(s) 313
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
Bsu36I CCTNAGG 1 cut(s) 450
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 488
BveI ACCTGC 1 cut(s) 374
CfoI GCGC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 178
CviAII CATG 3 cut(s) 100, 191, 385
CviJI RGCY 6 cut(s) 5, 36, 153, 293, 326, 488
CviKI_1 RGCY 6 cut(s) 5, 36, 153, 293, 326, 488
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 1 cut(s) 450
DpnI GATC 6 cut(s) 23, 131, 297, 320, 360, 389
DpnII GATC 6 cut(s) 21, 129, 295, 318, 358, 387
DraIII CACNNNGTG 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 26, 456
EarI CTCTTC 2 cut(s) 26, 456
Ecl136II GAGCTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 38
Eco32I GATATC 1 cut(s) 412
Eco53kI GAGCTC 1 cut(s) 36
Eco57I CTGAAG 2 cut(s) 50, 426
Eco81I CCTNAGG 1 cut(s) 450
EcoICRI GAGCTC 1 cut(s) 36
EcoNI CCTNNNNNAGG 1 cut(s) 164
EcoRV GATATC 1 cut(s) 412
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 3 cut(s) 103, 194, 388
FaiI YATR 4 cut(s) 77, 101, 192, 386
FatI CATG 3 cut(s) 99, 190, 384
FbaI TGATCA 3 cut(s) 21, 295, 387
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 2 cut(s) 6, 327
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 2 cut(s) 6, 327
FspI TGCGCA 1 cut(s) 118
GlaI GCGC 1 cut(s) 118
GluI GCNGC 2 cut(s) 6, 327
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 184
HhaI GCGC 1 cut(s) 119
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 3 cut(s) 103, 194, 388
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 2 cut(s) 61, 280
HindII GTYRAC 2 cut(s) 61, 280
HinfI GANTC 2 cut(s) 80, 349
HpaII CCGG 1 cut(s) 184
HphI GGTGA 2 cut(s) 16, 436
Hpy166II GTNNAC 2 cut(s) 61, 280
Hpy188I TCNGA 3 cut(s) 40, 300, 363
Hpy188III TCNNGA 3 cut(s) 256, 346, 433
Hpy8I GTNNAC 2 cut(s) 61, 280
Hpy99I CGWCG 5 cut(s) 44, 65, 227, 230, 245
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4IV ACGT 2 cut(s) 144, 225
HpyCH4V TGCA 1 cut(s) 329
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 125, 210, 237
HpyF3I CTNAG 1 cut(s) 450
HpySE526I ACGT 2 cut(s) 144, 225
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 3 cut(s) 103, 194, 388
HspAI GCGC 1 cut(s) 117
Ksp22I TGATCA 3 cut(s) 21, 295, 387
Kzo9I GATC 6 cut(s) 21, 129, 295, 318, 358, 387
LguI GCTCTTC 1 cut(s) 26
LmnI GCTCC 1 cut(s) 41
Lsp1109I GCAGC 1 cut(s) 313
MaeII ACGT 2 cut(s) 144, 225
MaeIII GTNAC 1 cut(s) 145
MalI GATC 6 cut(s) 23, 131, 297, 320, 360, 389
MboI GATC 6 cut(s) 21, 129, 295, 318, 358, 387
MboII GAAGA 6 cut(s) 25, 28, 43, 419, 470, 473
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 38
MlyI GAGTC 2 cut(s) 89, 358
MmeI TCCRAC 1 cut(s) 63
MroXI GAANNNNTTC 2 cut(s) 440, 465
MseI TTAA 1 cut(s) 288
MspI CCGG 1 cut(s) 184
MwoI GCNNNNNNNGC 4 cut(s) 42, 125, 210, 237
NdeII GATC 6 cut(s) 21, 129, 295, 318, 358, 387
NlaIII CATG 3 cut(s) 103, 194, 388
NmuCI GTSAC 1 cut(s) 145
NsbI TGCGCA 1 cut(s) 118
NspI RCATGY 1 cut(s) 194
PciSI GCTCTTC 1 cut(s) 26
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 273
PdmI GAANNNNTTC 2 cut(s) 440, 465
PflFI GACNNNGTC 1 cut(s) 275
PkrI GCNGC 2 cut(s) 7, 328
PleI GAGTC 2 cut(s) 88, 357
PpsI GAGTC 2 cut(s) 88, 357
Psp124BI GAGCTC 1 cut(s) 38
PsuI RGATCY 1 cut(s) 358
PsyI GACNNNGTC 1 cut(s) 275
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SacI GAGCTC 1 cut(s) 38
SalI GTCGAC 1 cut(s) 59
SapI GCTCTTC 1 cut(s) 26
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 2 cut(s) 6, 327
Sau3AI GATC 6 cut(s) 21, 129, 295, 318, 358, 387
ScaI AGTACT 1 cut(s) 179
SchI GAGTC 2 cut(s) 89, 358
SduI GDGCHC 1 cut(s) 38
SetI ASST 9 cut(s) 38, 60, 147, 171, 228, 318, 368, 406, 468
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
SsiI CCGC 3 cut(s) 6, 68, 415
SstI GAGCTC 1 cut(s) 38
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 376
TaiI ACGT 2 cut(s) 147, 228
TaqI TCGA 4 cut(s) 54, 60, 195, 492
TatI WGTACW 1 cut(s) 177
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 1 cut(s) 488
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 145
TspGWI ACGGA 1 cut(s) 221
TspRI CASTG 1 cut(s) 488
Tth111I GACNNNGTC 1 cut(s) 275
XagI CCTNNNNNAGG 1 cut(s) 164
XceI RCATGY 1 cut(s) 194
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XmiI GTMKAC 1 cut(s) 60
XmnI GAANNNNTTC 2 cut(s) 440, 465
ZraI GACGTC 1 cut(s) 226
ZrmI AGTACT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.