Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002052

Physical Location & Seq

Genomic Coordinates Reverse (-)

13491370 .. 13492725

Gene Structure 1356 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G36095.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTCTGATGAGTTGTCTCATAAGAATCTTGATCCAGTCAAGAAATATGCACAGCCTGTGCCACTTAAACATGGTAGTTGGAGGTGTAACTATTGTCATAAAGTCACAAATGGTGGAGTTAAAGGTGCAAAACAGCATATTCTTGGAGGTTTTAGGAATGTTACTCAATGTTCTCTAGTTCCTCCTATTATGAGGGAAGAAATAAAAGATTCCATGCTTAAGAAAACTGAAATTAAAGCCACTACTCAAATGATGCCACCCCCAGCCACTTCATATGACGATTATGGTGAAGAAGAAGAAGCAGCTGAAGTTTTGGGAAATGAAAGAAGACAGCCACCTGTGAAGAAACAAAAAGGTCTAATGGACATGTTTGTTTGTCCAACTCTTCCTAATGTATTGAAAGTTCTGAAAGATGCTAACATGTTGTACGATCACCTGGATCTTATGGTGGATGAAGTTGGGGAAGCTAATGTTGTCAAAGTGGTAATCGACAACGCATCAAACTATGTGAAAGCTAGCCAACTATCAATGGCAAACCGACCTCATTTGTATTGGACGCCTTGTGCTGCTCATTGCATATACCTCATGCTTGAGGATATAGGAAAGATTTCGGAAGTGAAGACTGTTATCACACAATGCATCTTCAAGAATGATTATATCTATGGTCACACTTCCCTTGTGAATATGATGAGAAAAATTCACAAGCGATGGAAATCTGCAAAGATCGGCTGTAACACGGTTTGCTACGTCTTTCACACAATTGGGCAGTATCATAAGCAGAGAAAAAACTTGAGGAATTCTGCGACTTCTCAAGAATGGGCAGATTCCAAATGGCAAAAGGAAATAGGAGCAAGGACTGTGAAGAGGATCATTATGCAAGACAGTTTCTGGCACAAGGATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

301

Amino Acids

34.44

Weight (kDa)

9.11

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-BED	PF02892	11 - 57	4.2e-10	BED zinc finger
DUF659	PF04937	132 - 212	5e-26	Domain of unknown function (DUF659)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36095 AT5G33406
fragaria_vesca	FvH4_2g19761 FvH4_2g31910 FvH4_3g32805 FvH4_3g33921 FvH4_3g33922 FvH4_4g11993 FvH4_5g36511 FvH4_6g16931 FvH4_6g16931
malus_domestica	MD01G1106300.v1.1 MD01G1106700.v1.1 MD08G1077600.v1.1
pyrus_communis	pycom01g13300 pycom06g05900 pycom12g14200 pycom13g27730 pycom16g16790
rosa_chinensis	RchiOBHm_Chr1g0361961 RchiOBHm_Chr1g0361981 RchiOBHm_Chr2g0141951 RchiOBHm_Chr7g0218361
rosa_multiflora	Rmu_co8147950.1_g000001 Rmu_co8356159.1_g000001 Rmu_sc0000117.1_g000022 Rmu_sc0007718.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097000 Rroxscaffold_2G00126330 Rroxscaffold_4G00304630 Rroxscaffold_5G00366570 Rroxscaffold_5G00366580
rosa_rugosa	Rorug03G0268800 Rorug03G0268900 Rorug05G0477700 Rorug05G0477800 RorugPtG0003500.1
rosa_samantha	Rh1AG259100 Rh4AG027200 Rh7CG313700
rosa_wichuraiana	Rw0G004680 Rw1G026970 Rw4G019360 Rw6G028600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	26, 447, 875
AcsI	RAATTY	2 cut(s)	696, 796
AcuI	CTGAAG	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	557
AfaI	GTAC	1 cut(s)	428
AflII	CTTAAG	1 cut(s)	218
AflIII	ACRYGT	2 cut(s)	366, 420
AgsI	TTSAA	2 cut(s)	400, 646
AjnI	CCWGG	1 cut(s)	435
AluBI	AGCT	3 cut(s)	305, 467, 515
AluI	AGCT	3 cut(s)	305, 467, 515
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	3 cut(s)	26, 447, 875
AlwNI	CAGNNNCTG	1 cut(s)	888
ApeKI	GCWGC	2 cut(s)	302, 566
ApoI	RAATTY	2 cut(s)	696, 796
Asp700I	GAANNNNTTC	1 cut(s)	607
AsuHPI	GGTGA	2 cut(s)	299, 425
AsuNHI	GCTAGC	1 cut(s)	515
BbsI	GAAGAC	2 cut(s)	334, 626
BbvI	GCAGC	2 cut(s)	314, 553
BccI	CCATC	2 cut(s)	702, 893
BciT130I	CCWGG	1 cut(s)	437
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	2 cut(s)	176, 516
BfrI	CTTAAG	1 cut(s)	218
BisI	GCNGC	2 cut(s)	303, 567
BlsI	GCNGC	2 cut(s)	304, 568
Bme1390I	CCNGG	1 cut(s)	437
BmrFI	CCNGG	1 cut(s)	437
BmsI	GCATC	4 cut(s)	243, 403, 506, 648
BmtI	GCTAGC	1 cut(s)	519
BpiI	GAAGAC	2 cut(s)	334, 626
BpuEI	CTTGAG	3 cut(s)	611, 795, 811
BsaBI	GATNNNNATC	1 cut(s)	712
BsaHI	GRCGYC	1 cut(s)	557
Bse1I	ACTGG	1 cut(s)	35
Bse3DI	GCAATG	1 cut(s)	571
Bse8I	GATNNNNATC	1 cut(s)	712
BseBI	CCWGG	1 cut(s)	437
BseGI	GGATG	2 cut(s)	457, 904
BseJI	GATNNNNATC	1 cut(s)	712
BseMI	GCAATG	1 cut(s)	571
BseNI	ACTGG	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	314, 553
BseYI	CCCAGC	1 cut(s)	262
BsmAI	GTCTC	1 cut(s)	21
Bsp143I	GATC	5 cut(s)	31, 430, 439, 723, 867
BspOI	GCTAGC	1 cut(s)	519
BspPI	GGATC	3 cut(s)	26, 447, 875
BspTI	CTTAAG	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	571
BsrI	ACTGG	1 cut(s)	35
BssMI	GATC	5 cut(s)	31, 430, 439, 723, 867
BssNI	GRCGYC	1 cut(s)	557
Bst2UI	CCWGG	1 cut(s)	437
Bst4CI	ACNGT	4 cut(s)	625, 739, 859, 884
Bst6I	CTCTTC	2 cut(s)	390, 857
BstACI	GRCGYC	1 cut(s)	557
BstAFI	CTTAAG	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	517
BstF5I	GGATG	2 cut(s)	457, 904
BstKTI	GATC	5 cut(s)	34, 433, 442, 726, 870
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	5 cut(s)	31, 430, 439, 723, 867
BstNI	CCWGG	1 cut(s)	437
BstNSI	RCATGY	2 cut(s)	370, 424
BstSCI	CCNGG	1 cut(s)	435
BstV1I	GCAGC	2 cut(s)	314, 553
BstV2I	GAAGAC	2 cut(s)	334, 626
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
BtgZI	GCGATG	1 cut(s)	721
BtsCI	GGATG	2 cut(s)	457, 904
Cac8I	GCNNGC	1 cut(s)	517
CaiI	CAGNNNCTG	1 cut(s)	888
CseI	GACGC	1 cut(s)	565
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	5 cut(s)	71, 214, 367, 421, 586
CviJI	RGCY	9 cut(s)	55, 239, 266, 305, 334, 467, 515, 519, 729
CviKI_1	RGCY	9 cut(s)	55, 239, 266, 305, 334, 467, 515, 519, 729
CviQI	GTAC	1 cut(s)	427
DpnI	GATC	5 cut(s)	33, 432, 441, 725, 869
DpnII	GATC	5 cut(s)	31, 430, 439, 723, 867
Eam1104I	CTCTTC	2 cut(s)	390, 857
EarI	CTCTTC	2 cut(s)	390, 857
Eco57I	CTGAAG	1 cut(s)	327
EcoRI	GAATTC	1 cut(s)	796
EcoRII	CCWGG	1 cut(s)	435
EcoT22I	ATGCAT	1 cut(s)	641
FaeI	CATG	5 cut(s)	74, 217, 370, 424, 589
FatI	CATG	5 cut(s)	70, 213, 366, 420, 585
FauNDI	CATATG	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	303, 567
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	2 cut(s)	303, 567
FspBI	CTAG	2 cut(s)	176, 516
GluI	GCNGC	2 cut(s)	303, 567
GsaI	CCCAGC	1 cut(s)	266
HgaI	GACGC	1 cut(s)	565
Hin1I	GRCGYC	1 cut(s)	557
Hin1II	CATG	5 cut(s)	74, 217, 370, 424, 589
HinfI	GANTC	3 cut(s)	25, 209, 824
HphI	GGTGA	2 cut(s)	299, 425
Hpy188I	TCNGA	3 cut(s)	7, 408, 613
Hpy188III	TCNNGA	4 cut(s)	29, 40, 646, 812
HpyCH4III	ACNGT	4 cut(s)	625, 739, 859, 884
HpyCH4IV	ACGT	1 cut(s)	747
HpyCH4V	TGCA	6 cut(s)	50, 128, 576, 639, 719, 877
HpySE526I	ACGT	1 cut(s)	747
Hsp92I	GRCGYC	1 cut(s)	557
Hsp92II	CATG	5 cut(s)	74, 217, 370, 424, 589
Kzo9I	GATC	5 cut(s)	31, 430, 439, 723, 867
LmnI	GCTCC	1 cut(s)	848
LpnPI	CCDG	7 cut(s)	48, 69, 276, 351, 422, 449, 874
Lsp1109I	GCAGC	2 cut(s)	314, 553
LweI	GCATC	4 cut(s)	243, 403, 506, 648
MaeI	CTAG	2 cut(s)	176, 516
MaeII	ACGT	1 cut(s)	747
MaeIII	GTNAC	5 cut(s)	86, 103, 160, 665, 731
MalI	GATC	5 cut(s)	33, 432, 441, 725, 869
MboI	GATC	5 cut(s)	31, 430, 439, 723, 867
MfeI	CAATTG	1 cut(s)	759
MflI	RGATCY	1 cut(s)	439
MluCI	AATT	4 cut(s)	231, 696, 759, 796
MmeI	TCCRAC	2 cut(s)	59, 404
MnlI	CCTC	9 cut(s)	75, 140, 186, 192, 552, 586, 593, 786, 858
Mph1103I	ATGCAT	1 cut(s)	641
MroXI	GAANNNNTTC	1 cut(s)	607
MseI	TTAA	4 cut(s)	66, 120, 219, 234
MslI	CAYNNNNRTG	1 cut(s)	897
MspA1I	CMGCKG	1 cut(s)	305
MspCI	CTTAAG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	437
MunI	CAATTG	1 cut(s)	759
MvaI	CCWGG	1 cut(s)	437
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	5 cut(s)	31, 430, 439, 723, 867
NheI	GCTAGC	1 cut(s)	515
NlaIII	CATG	5 cut(s)	74, 217, 370, 424, 589
NmuCI	GTSAC	2 cut(s)	103, 665
NsiI	ATGCAT	1 cut(s)	641
NspI	RCATGY	2 cut(s)	370, 424
PciI	ACATGT	2 cut(s)	366, 420
PdmI	GAANNNNTTC	1 cut(s)	607
PfeI	GAWTC	3 cut(s)	25, 209, 824
PkrI	GCNGC	2 cut(s)	304, 568
PscI	ACATGT	2 cut(s)	366, 420
Psp6I	CCWGG	1 cut(s)	435
PspFI	CCCAGC	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	435
PsrI	GAACNNNNNNTAC	2 cut(s)	387, 419
PstNI	CAGNNNCTG	1 cut(s)	888
PsuI	RGATCY	1 cut(s)	439
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
RseI	CAYNNNNRTG	1 cut(s)	897
SaqAI	TTAA	4 cut(s)	66, 120, 219, 234
SatI	GCNGC	2 cut(s)	303, 567
Sau3AI	GATC	5 cut(s)	31, 430, 439, 723, 867
ScrFI	CCNGG	1 cut(s)	437
SfaNI	GCATC	4 cut(s)	243, 403, 506, 648
SmiMI	CAYNNNNRTG	1 cut(s)	897
SmlI	CTYRAG	4 cut(s)	218, 590, 790, 810
SmoI	CTYRAG	4 cut(s)	218, 590, 790, 810
Sse9I	AATT	4 cut(s)	231, 696, 759, 796
SspMI	CTAG	2 cut(s)	176, 516
StyD4I	CCNGG	1 cut(s)	435
TaaI	ACNGT	4 cut(s)	625, 739, 859, 884
TaiI	ACGT	1 cut(s)	750
TaqI	TCGA	1 cut(s)	489
TasI	AATT	4 cut(s)	231, 696, 759, 796
TfiI	GAWTC	3 cut(s)	25, 209, 824
Tru1I	TTAA	4 cut(s)	66, 120, 219, 234
Tru9I	TTAA	4 cut(s)	66, 120, 219, 234
TseFI	GTSAC	2 cut(s)	103, 665
TseI	GCWGC	2 cut(s)	302, 566
Tsp45I	GTSAC	2 cut(s)	103, 665
TspDTI	ATGAA	3 cut(s)	261, 336, 468
Vha464I	CTTAAG	1 cut(s)	218
XapI	RAATTY	2 cut(s)	696, 796
XceI	RCATGY	2 cut(s)	370, 424
XmnI	GAANNNNTTC	1 cut(s)	607
XspI	CTAG	2 cut(s)	176, 516
Zsp2I	ATGCAT	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.