Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002052

Physical Location & Seq

Genomic Coordinates Forward (+)

48507438 .. 48509820

Gene Structure 2383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00366570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAGTTCTAGTACTAGTGGGACAACAAAGAAAGACCATGCTTGGCAATGGACTAAACCAATTCCCAGGGAGTTGAAGTACTTTTTGTGTGCATTTTGTGATCAAAGAAATACCTGTGGCATATTCAGGTTCAAGCAGCATTTAGTTGGCACTCATAAAGGAATCAAACCTTGTAACAAAGTTCCACCAAATGTGAAAGATTGGTGCACTAAAGCACTTCAAAGAAATGAAGAAGAGAAACAAACAAGGATTGCGGTGCGTCGGGAGATAGGGGGATTGGAAAGTCTAGAAGAAGAAGATGCACATGATCATGAGGTGACAAATGTGGCTGCAAGTGAGAGTGCTAGTGCTCAAACTCCACTTGGTGGTGGTTCTACGGGTCAACCGAAGGCTAGAGGACCGATGGACAAGTTTGTATCCTCAAAAGCTCGTCAAGTTACATTGAATACCTCATACAAGAAAGAAGAAAGACATGATGTGTGTAGAGCAATTGGGCGTTTGTTTTATACTAGTGCATTGGCTTTCAATGTGGCAAATAATCCTTATTATTTTGCGGCATTGGAGATGGTTGCCAAATACAGTCCCGATTTTCAACCTCCAACAAGTCATGAGTTAAGGACTTGGATTTTGAAGGAAGAAGTTGAAGATGTTCAAAAGTTAATGGTAGCACACAAAAAAGATTGGAGCCACTATAGATGCACTATTATGTTGGATGCATGGTTGGACGGATGGCAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

246

Amino Acids

28.09

Weight (kDa)

8.6

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF659	PF04937	200 - 243	3.1e-11	Domain of unknown function (DUF659)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36095 AT5G33406
fragaria_vesca	FvH4_2g19761 FvH4_2g31910 FvH4_3g32805 FvH4_3g33921 FvH4_3g33922 FvH4_4g11993 FvH4_5g36511 FvH4_6g16931 FvH4_6g16931
malus_domestica	MD01G1106300.v1.1 MD01G1106700.v1.1 MD08G1077600.v1.1
pyrus_communis	pycom01g13300 pycom06g05900 pycom12g14200 pycom13g27730 pycom16g16790
rosa_chinensis	RchiOBHm_Chr1g0361961 RchiOBHm_Chr1g0361981 RchiOBHm_Chr2g0141951 RchiOBHm_Chr7g0218361
rosa_multiflora	Rmu_co8147950.1_g000001 Rmu_co8356159.1_g000001 Rmu_sc0000117.1_g000022 Rmu_sc0007718.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097000 Rroxscaffold_2G00126330 Rroxscaffold_4G00304630 Rroxscaffold_5G00366570 Rroxscaffold_5G00366580
rosa_rugosa	Rorug03G0268800 Rorug03G0268900 Rorug05G0477700 Rorug05G0477800 RorugPtG0003500.1
rosa_samantha	Rh1AG259100 Rh4AG027200 Rh7CG313700
rosa_wichuraiana	Rw0G004680 Rw1G026970 Rw4G019360 Rw6G028600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	365
AciI	CCGC	2 cut(s)	254, 554
AdeI	CACNNNGTG	1 cut(s)	365
AfaI	GTAC	2 cut(s)	13, 80
AfiI	CCNNNNNNNGG	1 cut(s)	365
AgsI	TTSAA	9 cut(s)	76, 133, 221, 445, 526, 593, 631, 644, 653
AhlI	ACTAGT	2 cut(s)	14, 509
AjnI	CCWGG	1 cut(s)	65
AluBI	AGCT	1 cut(s)	428
AluI	AGCT	1 cut(s)	428
Alw21I	GWGCWC	2 cut(s)	209, 352
Alw44I	GTGCAC	1 cut(s)	205
ApaLI	GTGCAC	1 cut(s)	205
ApeKI	GCWGC	2 cut(s)	136, 329
ArsI	GACNNNNNNTTYG	2 cut(s)	610, 642
Asp700I	GAANNNNTTC	1 cut(s)	648
AspS9I	GGNCC	1 cut(s)	398
AsuHPI	GGTGA	1 cut(s)	328
AvaII	GGWCC	1 cut(s)	398
BaeGI	GKGCMC	1 cut(s)	209
Bbv12I	GWGCWC	2 cut(s)	209, 352
BbvI	GCAGC	2 cut(s)	148, 316
BccI	CCATC	3 cut(s)	397, 559, 723
BciT130I	CCWGG	1 cut(s)	67
BciVI	GTATCC	1 cut(s)	427
BclI	TGATCA	2 cut(s)	100, 307
BcuI	ACTAGT	2 cut(s)	14, 509
BfaI	CTAG	6 cut(s)	9, 15, 287, 345, 393, 510
BfmI	CTRYAG	1 cut(s)	691
BfuI	GTATCC	1 cut(s)	427
BisI	GCNGC	3 cut(s)	137, 330, 555
BlsI	GCNGC	3 cut(s)	138, 331, 556
BmcAI	AGTACT	2 cut(s)	13, 80
Bme1390I	CCNGG	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	1 cut(s)	686
BmrFI	CCNGG	1 cut(s)	67
BmsI	GCATC	3 cut(s)	289, 686, 703
BsaJI	CCNNGG	2 cut(s)	65, 66
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse3DI	GCAATG	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	2 cut(s)	65, 66
BseGI	GGATG	2 cut(s)	718, 734
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMI	GCAATG	1 cut(s)	53
BseSI	GKGCMC	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	148, 316
BsiHKAI	GWGCWC	2 cut(s)	209, 352
BslFI	GGGAC	2 cut(s)	34, 567
BslI	CCNNNNNNNGG	1 cut(s)	365
BsmFI	GGGAC	2 cut(s)	34, 567
Bsp1286I	GDGCHC	2 cut(s)	209, 352
Bsp143I	GATC	2 cut(s)	100, 307
BspACI	CCGC	2 cut(s)	254, 554
BspHI	TCATGA	2 cut(s)	310, 607
BspLI	GGNNCC	1 cut(s)	686
BsrDI	GCAATG	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	65, 66
BssMI	GATC	2 cut(s)	100, 307
Bst2UI	CCWGG	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	581
Bst6I	CTCTTC	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	718, 734
BstKTI	GATC	2 cut(s)	103, 310
BstMBI	GATC	2 cut(s)	100, 307
BstNI	CCWGG	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	65
BstSFI	CTRYAG	1 cut(s)	691
BstSLI	GKGCMC	1 cut(s)	209
BstV1I	GCAGC	2 cut(s)	148, 316
BsuI	GTATCC	1 cut(s)	427
BtsCI	GGATG	2 cut(s)	718, 734
CciI	TCATGA	2 cut(s)	310, 607
Cfr13I	GGNCC	1 cut(s)	398
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	2 cut(s)	12, 79
CviAII	CATG	6 cut(s)	38, 305, 311, 473, 608, 717
CviJI	RGCY	5 cut(s)	329, 392, 428, 521, 687
CviKI_1	RGCY	5 cut(s)	329, 392, 428, 521, 687
CviQI	GTAC	2 cut(s)	12, 79
DpnI	GATC	2 cut(s)	102, 309
DpnII	GATC	2 cut(s)	100, 307
DraIII	CACNNNGTG	1 cut(s)	365
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	65
EcoT22I	ATGCAT	1 cut(s)	718
FaeI	CATG	6 cut(s)	41, 308, 314, 476, 611, 720
FaqI	GGGAC	2 cut(s)	34, 567
FatI	CATG	6 cut(s)	37, 304, 310, 472, 607, 716
FbaI	TGATCA	2 cut(s)	100, 307
Fnu4HI	GCNGC	3 cut(s)	137, 330, 555
FokI	GGATG	1 cut(s)	725
Fsp4HI	GCNGC	3 cut(s)	137, 330, 555
FspBI	CTAG	6 cut(s)	9, 15, 287, 345, 393, 510
GluI	GCNGC	3 cut(s)	137, 330, 555
HgaI	GACGC	1 cut(s)	248
Hin1II	CATG	6 cut(s)	41, 308, 314, 476, 611, 720
HincII	GTYRAC	1 cut(s)	383
HindII	GTYRAC	1 cut(s)	383
HinfI	GANTC	1 cut(s)	162
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	2 cut(s)	207, 383
Hpy188III	TCNNGA	5 cut(s)	263, 287, 311, 584, 608
Hpy8I	GTNNAC	2 cut(s)	207, 383
Hpy99I	CGWCG	1 cut(s)	264
HpyAV	CCTTC	2 cut(s)	382, 625
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4V	TGCA	7 cut(s)	92, 207, 302, 332, 515, 699, 716
Hsp92II	CATG	6 cut(s)	41, 308, 314, 476, 611, 720
Ksp22I	TGATCA	2 cut(s)	100, 307
Kzo9I	GATC	2 cut(s)	100, 307
LmnI	GCTCC	1 cut(s)	684
LpnPI	CCDG	4 cut(s)	52, 79, 112, 127
Lsp1109I	GCAGC	2 cut(s)	148, 316
LweI	GCATC	3 cut(s)	289, 686, 703
MaeI	CTAG	6 cut(s)	9, 15, 287, 345, 393, 510
MaeIII	GTNAC	3 cut(s)	173, 316, 436
MalI	GATC	2 cut(s)	102, 309
MboI	GATC	2 cut(s)	100, 307
MboII	GAAGA	8 cut(s)	242, 245, 302, 305, 308, 476, 647, 656
MfeI	CAATTG	1 cut(s)	489
MhlI	GDGCHC	2 cut(s)	209, 352
MluCI	AATT	2 cut(s)	60, 489
MmeI	TCCRAC	3 cut(s)	623, 690, 702
MnlI	CCTC	5 cut(s)	307, 389, 430, 460, 606
Mph1103I	ATGCAT	1 cut(s)	718
MroXI	GAANNNNTTC	1 cut(s)	648
MseI	TTAA	2 cut(s)	614, 659
MslI	CAYNNNNRTG	2 cut(s)	309, 704
MspR9I	CCNGG	1 cut(s)	67
MunI	CAATTG	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	67
NdeII	GATC	2 cut(s)	100, 307
NlaIII	CATG	6 cut(s)	41, 308, 314, 476, 611, 720
NlaIV	GGNNCC	1 cut(s)	686
NmuCI	GTSAC	1 cut(s)	316
NsiI	ATGCAT	1 cut(s)	718
PagI	TCATGA	2 cut(s)	310, 607
PasI	CCCWGGG	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	1 cut(s)	383
PdmI	GAANNNNTTC	1 cut(s)	648
PfeI	GAWTC	1 cut(s)	162
PflMI	CCANNNNNTGG	1 cut(s)	365
PkrI	GCNGC	3 cut(s)	138, 331, 556
Psp6I	CCWGG	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	65
PspN4I	GGNNCC	1 cut(s)	686
PspPI	GGNCC	1 cut(s)	398
RsaI	GTAC	2 cut(s)	13, 80
RsaNI	GTAC	2 cut(s)	12, 79
RseI	CAYNNNNRTG	2 cut(s)	309, 704
SaqAI	TTAA	2 cut(s)	614, 659
SatI	GCNGC	3 cut(s)	137, 330, 555
Sau3AI	GATC	2 cut(s)	100, 307
Sau96I	GGNCC	1 cut(s)	398
ScaI	AGTACT	2 cut(s)	13, 80
ScrFI	CCNGG	1 cut(s)	67
SduI	GDGCHC	2 cut(s)	209, 352
SetI	ASST	7 cut(s)	116, 131, 172, 318, 430, 452, 598
SfaNI	GCATC	3 cut(s)	289, 686, 703
SfcI	CTRYAG	1 cut(s)	691
SinI	GGWCC	1 cut(s)	398
SmiMI	CAYNNNNRTG	2 cut(s)	309, 704
SpeI	ACTAGT	2 cut(s)	14, 509
Sse9I	AATT	2 cut(s)	60, 489
SsiI	CCGC	2 cut(s)	254, 554
SspMI	CTAG	6 cut(s)	9, 15, 287, 345, 393, 510
StyD4I	CCNGG	1 cut(s)	65
TaaI	ACNGT	1 cut(s)	581
TaqII	GACCGA	1 cut(s)	415
TasI	AATT	2 cut(s)	60, 489
TatI	WGTACW	2 cut(s)	11, 78
TauI	GCSGC	1 cut(s)	557
TfiI	GAWTC	1 cut(s)	162
Tru1I	TTAA	2 cut(s)	614, 659
Tru9I	TTAA	2 cut(s)	614, 659
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	2 cut(s)	136, 329
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	243
TspGWI	ACGGA	1 cut(s)	741
Van91I	CCANNNNNTGG	1 cut(s)	365
VneI	GTGCAC	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	398
XbaI	TCTAGA	1 cut(s)	286
XmnI	GAANNNNTTC	1 cut(s)	648
XspI	CTAG	6 cut(s)	9, 15, 287, 345, 393, 510
ZrmI	AGTACT	2 cut(s)	13, 80
Zsp2I	ATGCAT	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.