Rh1AG259100

Protein of unknown function (DUF 659)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
47709173 .. 47711395
2223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG259100.1

Sequence Viewer

Length: 1893 bp
ATGCAGGTAACAATGAGTTCTAGTACTAGTACTAGTGGGACAACAAAGAAAGATCATGCTTGGAAATGGACTAAACCAATTCCGGTGGAGTTGAAGTACTTTTTGTGTGTGTTTTGTGATCAAAAAAATACCGGTGGCATTTTCAGATTCAAGCAGCATTTAGTTGGCACCCATAAAGGAATCAAAGCTTGTCGAAAAGTCCCACCAAATGTGAAGGATTGGTGCACTTTAGCACTTAAAAGAAATGAAGAAGAGAAACAAGCAAGGATTACGGTGCGTAGGGAGATAGGGGGATTGGAGCCACTAGAAGAGGAAGATGCACCTGTTCAAGCAGTGGAAAATGTGGCTGCAAGTGAGAGTGGTAGTGCTCAAACTCCACTTGGTGGTGGTTCTACGAGTCAACCAAAGTCAAGAGGACCGATGGACAAGTTTGTGTCCTCAAAAGCTCGGCAAGCTACATTGAATTCTTCATTCAAGAAAGAAGAAAGACGTAATGTGTGTAGGGCGATTGGGCGGTTGTTCTATACTAGTGCCATAGCATTCAATGTGGCAAATAATCCTTATTATTTTGCGGCATTGGAGCAAGTTTCCAAGTACGGCCCCGGTTTTCAACCTCCAACTAGTCATGAGCTAAGGACTTGGATTTTGAAGGAAGAAGTTGTAGATGTTCAAAAAATGATGTTAGAGCACAAAAAAGATTGGAGCCATTATGGATGCACAATTATGTCGGATGGTTGGACGGATGGCAAAAGTAGGGTTATACTAAATTTTTTAGTAAATAGCCCTAGAGGTACATGGTTTTTGAAATCAGTTGATGCATCGGATACAATTAAAAATGGGGAGTTGATGCTCAATTATTTGGATAGTGTTGTGGAGGAGGTAGGGGAGGAGAATGTGGTCCAAATAGTTACCGACAATGCTTCTAATTATAAGTGGGCGGGAAAGGAACTTATGAAGCATAGAAGCAAATTGTGGTGGACTCCATGTGCGGCTCATTGCATTGACTTGATGTTGGAGGATATAAGCAAGTTGAAAGTCTTTGAAACTACCATTCAAAGAGCTAAGCAAATTGTGAAGTTTATTTATGGGCACACACAAGTTCTTTCCATTATGAGAAAATTCACCAAGAACAAGGAAATTATTCGTCCGGCGGTTACAAGGTTTGCCACATCTTTTCTCTCTCTTCAAAGTTTATATAAGCAAAAGGAAGCTCTCATTAGTATGTTTTCATCTAAAGATTGGAATGAATGTGGATGCACAAAACATAAAGATGCAAATGATGTGAGGAAGTGGATACTTCATGATGGAAATTTTTGGAACCATGTTACTTATTGCATAAAAAGTGTTCTACCACTTGTTTGTGTTTTGAGAGAGGTTGATTCAGAAGTGAGACCTGCTATGGGATTTATCTATGAGTTGATGGATGCTGCAAAAGAAAAGATAGCTAAGAATCTTGGAAATGTGGAAGCAAAGTATGGTCCAATTTGGAGGAGAATAGATAATAGATGGAGTCCACAACTTCATCAACCATTGCATGCAGCGGGTTATTACTTGAACCCTCAATTTCAGTATGAAGAAAACTTTTCAAATACCGAGCATGTGAAGCAGGGTTTGGAAGAGTGCATGGATAGGATGCTAGTTGGTGAGGATCGTATTAAAGCGGAGATACAATTAGACTTATATGAGCGAAAGCTCGGTAAGTTTGGAAGTGAAATGGCCTTGTCTACTAGGAAGAAGCGATCACCCGTGTTTTGGTGGGAAAAATATGGGACACAGACACCGGAGTTGATGACTTTTGCTATTCGGGTCCTTTCCCTTACTTGTAGTGCATCGGAGTGTGAGAGGAATTGGAGCACTTTTGAAATGGTAAGTTTTCTATCACTTCTAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

630

Amino Acids

72.2

Weight (kDa)

8.99

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 206 - 357 1.6e-62 Domain of unknown function (DUF659)
Dimer_Tnp_hAT PF05699 576 - 620 6.2e-07 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 930
Acc36I ACCTGC 1 cut(s) 1402
AccB1I GGYRCC 1 cut(s) 167
AccB7I CCANNNNNTGG 1 cut(s) 383
AccI GTMKAC 1 cut(s) 1724
AciI CCGC 7 cut(s) 514, 572, 938, 989, 1151, 1541, 1661
AclWI GGATC 1 cut(s) 1656
AcsI RAATTY 4 cut(s) 463, 766, 1118, 1309
AdeI CACNNNGTG 1 cut(s) 383
AfaI GTAC 5 cut(s) 25, 31, 98, 596, 793
AfiI CCNNNNNNNGG 3 cut(s) 383, 1400, 1752
AgeI ACCGGT 1 cut(s) 131
AhlI ACTAGT 4 cut(s) 26, 32, 527, 620
AjuI GAANNNNNNNTTGG 2 cut(s) 1595, 1627
AluBI AGCT 8 cut(s) 188, 446, 455, 631, 1061, 1211, 1445, 1693
AluI AGCT 8 cut(s) 188, 446, 455, 631, 1061, 1211, 1445, 1693
Alw21I GWGCWC 4 cut(s) 227, 370, 690, 1856
Alw26I GTCTC 1 cut(s) 1384
Alw44I GTGCAC 1 cut(s) 223
AlwI GGATC 1 cut(s) 1656
AoxI GGCC 2 cut(s) 598, 1716
ApaLI GTGCAC 1 cut(s) 223
ApeKI GCWGC 4 cut(s) 154, 347, 1427, 1538
ApoI RAATTY 4 cut(s) 463, 766, 1118, 1309
ArsI GACNNNNNNTTYG 2 cut(s) 628, 660
AsiGI ACCGGT 1 cut(s) 131
Asp700I GAANNNNTTC 1 cut(s) 1140
AspS9I GGNCC 5 cut(s) 416, 599, 898, 1478, 1807
AsuC2I CCSGG 1 cut(s) 603
AsuHPI GGTGA 3 cut(s) 1114, 1655, 1734
AvaII GGWCC 4 cut(s) 416, 898, 1478, 1807
BaeGI GKGCMC 2 cut(s) 227, 1092
BanI GGYRCC 1 cut(s) 167
Bbv12I GWGCWC 4 cut(s) 227, 370, 690, 1856
BbvI GCAGC 4 cut(s) 166, 334, 1414, 1550
BccI CCATC 6 cut(s) 415, 725, 737, 1298, 1414, 1500
BceAI ACGGC 1 cut(s) 613
BciVI GTATCC 2 cut(s) 817, 1287
BclI TGATCA 1 cut(s) 118
BcnI CCSGG 1 cut(s) 603
BcoDI GTCTC 1 cut(s) 1384
BcuI ACTAGT 4 cut(s) 26, 32, 527, 620
BfaI CTAG 9 cut(s) 21, 27, 33, 305, 528, 621, 786, 1637, 1728
BfuAI ACCTGC 1 cut(s) 1402
BfuI GTATCC 2 cut(s) 817, 1287
BisI GCNGC 6 cut(s) 155, 348, 573, 990, 1428, 1539
BlpI GCTNAGC 1 cut(s) 1062
BlsI GCNGC 6 cut(s) 156, 349, 574, 991, 1429, 1540
BmcAI AGTACT 3 cut(s) 25, 31, 98
Bme1390I CCNGG 1 cut(s) 603
Bme18I GGWCC 4 cut(s) 416, 898, 1478, 1807
BmgT120I GGNCC 5 cut(s) 416, 599, 898, 1478, 1807
BmiI GGNNCC 6 cut(s) 169, 300, 601, 704, 1319, 1808
BmrFI CCNGG 1 cut(s) 603
Bpu10I CCTNAGC 1 cut(s) 632
Bpu1102I GCTNAGC 1 cut(s) 1062
BpuMI CCSGG 1 cut(s) 603
BsaI GGTCTC 1 cut(s) 1384
BsaJI CCNNGG 1 cut(s) 601
BsaWI WCCGGW 3 cut(s) 82, 131, 1780
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 3 cut(s) 383, 1400, 1752
Bse118I RCCGGY 1 cut(s) 131
Bse3DI GCAATG 2 cut(s) 994, 1529
BseDI CCNNGG 1 cut(s) 601
BseGI GGATG 6 cut(s) 719, 736, 748, 1259, 1429, 1638
BseLI CCNNNNNNNGG 3 cut(s) 383, 1400, 1752
BseMI GCAATG 2 cut(s) 994, 1529
BseRI GAGGAG 3 cut(s) 890, 902, 1504
BseSI GKGCMC 2 cut(s) 227, 1092
BseXI GCAGC 4 cut(s) 166, 334, 1414, 1550
BshFI GGCC 2 cut(s) 600, 1718
BshNI GGYRCC 1 cut(s) 167
BshTI ACCGGT 1 cut(s) 131
BsiHKAI GWGCWC 4 cut(s) 227, 370, 690, 1856
BsiSI CCGG 5 cut(s) 83, 132, 603, 1148, 1781
BslFI GGGAC 3 cut(s) 52, 185, 1783
BslI CCNNNNNNNGG 3 cut(s) 383, 1400, 1752
BsmAI GTCTC 1 cut(s) 1384
BsmFI GGGAC 3 cut(s) 52, 185, 1783
BsmI GAATGC 1 cut(s) 539
BsnI GGCC 2 cut(s) 600, 1718
Bso31I GGTCTC 1 cut(s) 1384
Bsp1286I GDGCHC 5 cut(s) 227, 370, 690, 1092, 1856
Bsp143I GATC 4 cut(s) 52, 118, 1648, 1739
Bsp1720I GCTNAGC 1 cut(s) 1062
BspACI CCGC 7 cut(s) 514, 572, 938, 989, 1151, 1541, 1661
BspANI GGCC 2 cut(s) 600, 1718
BspHI TCATGA 2 cut(s) 625, 1300
BspLI GGNNCC 6 cut(s) 169, 300, 601, 704, 1319, 1808
BspMI ACCTGC 1 cut(s) 1402
BspPI GGATC 1 cut(s) 1656
BspT107I GGYRCC 1 cut(s) 167
BspTNI GGTCTC 1 cut(s) 1384
BsrDI GCAATG 2 cut(s) 994, 1529
BsrFI RCCGGY 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 601
BssMI GATC 4 cut(s) 52, 118, 1648, 1739
Bst4CI ACNGT 1 cut(s) 274
Bst6I CTCTTC 4 cut(s) 246, 303, 1188, 1611
BstC8I GCNNGC 2 cut(s) 453, 1536
BstDEI CTNAG 4 cut(s) 632, 1062, 1446, 1886
BstF5I GGATG 6 cut(s) 719, 736, 748, 1259, 1429, 1638
BstKTI GATC 4 cut(s) 55, 121, 1651, 1742
BstMAI GTCTC 1 cut(s) 1384
BstMBI GATC 4 cut(s) 52, 118, 1648, 1739
BstMWI GCNNNNNNNGC 2 cut(s) 452, 1603
BstNSI RCATGY 2 cut(s) 1538, 1601
BstSCI CCNGG 1 cut(s) 601
BstSLI GKGCMC 2 cut(s) 227, 1092
BstV1I GCAGC 4 cut(s) 166, 334, 1414, 1550
BsuI GTATCC 2 cut(s) 817, 1287
BsuRI GGCC 2 cut(s) 600, 1718
BtsCI GGATG 6 cut(s) 719, 736, 748, 1259, 1429, 1638
BtsI GCAGTG 1 cut(s) 339
BtsIMutI CAGTG 1 cut(s) 339
BveI ACCTGC 1 cut(s) 1402
Cac8I GCNNGC 2 cut(s) 453, 1536
CciI TCATGA 2 cut(s) 625, 1300
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 5 cut(s) 416, 599, 898, 1478, 1807
Csp6I GTAC 5 cut(s) 24, 30, 97, 595, 792
CspAI ACCGGT 1 cut(s) 131
CspCI CAANNNNNGTGG 2 cut(s) 66, 101
CviAII CATG 9 cut(s) 56, 626, 795, 984, 1301, 1322, 1535, 1598, 1624
CviQI GTAC 5 cut(s) 24, 30, 97, 595, 792
DdeI CTNAG 4 cut(s) 632, 1062, 1446, 1886
DpnI GATC 4 cut(s) 54, 120, 1650, 1741
DpnII GATC 4 cut(s) 52, 118, 1648, 1739
DraIII CACNNNGTG 1 cut(s) 383
Eam1104I CTCTTC 4 cut(s) 246, 303, 1188, 1611
EarI CTCTTC 4 cut(s) 246, 303, 1188, 1611
Eco31I GGTCTC 1 cut(s) 1384
Eco47I GGWCC 4 cut(s) 416, 898, 1478, 1807
EcoO109I RGGNCCY 1 cut(s) 1807
EcoRI GAATTC 1 cut(s) 463
EcoT22I ATGCAT 1 cut(s) 820
FaeI CATG 9 cut(s) 59, 629, 798, 987, 1304, 1325, 1538, 1601, 1627
FaqI GGGAC 3 cut(s) 52, 185, 1783
FatI CATG 9 cut(s) 55, 625, 794, 983, 1300, 1321, 1534, 1597, 1623
FauI CCCGC 2 cut(s) 931, 1534
FbaI TGATCA 1 cut(s) 118
FblI GTMKAC 1 cut(s) 1724
Fnu4HI GCNGC 6 cut(s) 155, 348, 573, 990, 1428, 1539
FokI GGATG 6 cut(s) 726, 743, 755, 1266, 1436, 1645
Fsp4HI GCNGC 6 cut(s) 155, 348, 573, 990, 1428, 1539
FspBI CTAG 9 cut(s) 21, 27, 33, 305, 528, 621, 786, 1637, 1728
GluI GCNGC 6 cut(s) 155, 348, 573, 990, 1428, 1539
HaeIII GGCC 2 cut(s) 600, 1718
HapII CCGG 5 cut(s) 83, 132, 603, 1148, 1781
Hin1II CATG 9 cut(s) 59, 629, 798, 987, 1304, 1325, 1538, 1601, 1627
HincII GTYRAC 1 cut(s) 401
HindII GTYRAC 1 cut(s) 401
HindIII AAGCTT 1 cut(s) 186
HinfI GANTC 7 cut(s) 147, 180, 397, 979, 1379, 1450, 1510
HpaII CCGG 5 cut(s) 83, 132, 603, 1148, 1781
HphI GGTGA 3 cut(s) 1114, 1655, 1734
Hpy166II GTNNAC 5 cut(s) 225, 401, 978, 1514, 1725
Hpy188I TCNGA 5 cut(s) 146, 730, 823, 1384, 1834
Hpy188III TCNNGA 4 cut(s) 411, 475, 626, 1301
Hpy8I GTNNAC 5 cut(s) 225, 401, 978, 1514, 1725
HpyAV CCTTC 2 cut(s) 208, 643
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 1 cut(s) 490
HpyF10VI GCNNNNNNNGC 2 cut(s) 452, 1603
HpyF3I CTNAG 4 cut(s) 632, 1062, 1446, 1886
HpySE526I ACGT 1 cut(s) 490
Hsp92II CATG 9 cut(s) 59, 629, 798, 987, 1304, 1325, 1538, 1601, 1627
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 4 cut(s) 52, 118, 1648, 1739
LmnI GCTCC 4 cut(s) 298, 580, 702, 1851
LpnPI CCDG 8 cut(s) 96, 145, 336, 616, 1161, 1407, 1592, 1794
Lsp1109I GCAGC 4 cut(s) 166, 334, 1414, 1550
MaeI CTAG 9 cut(s) 21, 27, 33, 305, 528, 621, 786, 1637, 1728
MaeII ACGT 1 cut(s) 490
MaeIII GTNAC 4 cut(s) 7, 907, 1153, 1324
MalI GATC 4 cut(s) 54, 120, 1650, 1741
MboI GATC 4 cut(s) 52, 118, 1648, 1739
MhlI GDGCHC 5 cut(s) 227, 370, 690, 1092, 1856
MlyI GAGTC 3 cut(s) 406, 973, 1519
MmeI TCCRAC 4 cut(s) 641, 708, 716, 993
Mph1103I ATGCAT 1 cut(s) 820
MroXI GAANNNNTTC 1 cut(s) 1140
MseI TTAA 3 cut(s) 237, 831, 1656
MslI CAYNNNNRTG 4 cut(s) 722, 1220, 1269, 1834
MspA1I CMGCKG 1 cut(s) 1541
MspI CCGG 5 cut(s) 83, 132, 603, 1148, 1781
MspR9I CCNGG 1 cut(s) 603
Mva1269I GAATGC 1 cut(s) 539
MwoI GCNNNNNNNGC 2 cut(s) 452, 1603
NciI CCSGG 1 cut(s) 603
NdeII GATC 4 cut(s) 52, 118, 1648, 1739
NlaIII CATG 9 cut(s) 59, 629, 798, 987, 1304, 1325, 1538, 1601, 1627
NlaIV GGNNCC 6 cut(s) 169, 300, 601, 704, 1319, 1808
NmeAIII GCCGAG 1 cut(s) 427
NsiI ATGCAT 1 cut(s) 820
NspI RCATGY 2 cut(s) 1538, 1601
PaeI GCATGC 1 cut(s) 1538
PagI TCATGA 2 cut(s) 625, 1300
PctI GAATGC 1 cut(s) 539
PdmI GAANNNNTTC 1 cut(s) 1140
PfeI GAWTC 4 cut(s) 147, 180, 1379, 1450
PflMI CCANNNNNTGG 1 cut(s) 383
PinAI ACCGGT 1 cut(s) 131
PkrI GCNGC 6 cut(s) 156, 349, 574, 991, 1429, 1540
PleI GAGTC 3 cut(s) 405, 973, 1518
PpsI GAGTC 3 cut(s) 405, 973, 1518
PpuMI RGGWCCY 1 cut(s) 1807
PsiI TTATAA 1 cut(s) 930
Psp5II RGGWCCY 1 cut(s) 1807
PspN4I GGNNCC 6 cut(s) 169, 300, 601, 704, 1319, 1808
PspPI GGNCC 5 cut(s) 416, 599, 898, 1478, 1807
PspPPI RGGWCCY 1 cut(s) 1807
RsaI GTAC 5 cut(s) 25, 31, 98, 596, 793
RsaNI GTAC 5 cut(s) 24, 30, 97, 595, 792
RseI CAYNNNNRTG 4 cut(s) 722, 1220, 1269, 1834
SaqAI TTAA 3 cut(s) 237, 831, 1656
SatI GCNGC 6 cut(s) 155, 348, 573, 990, 1428, 1539
Sau3AI GATC 4 cut(s) 52, 118, 1648, 1739
Sau96I GGNCC 5 cut(s) 416, 599, 898, 1478, 1807
ScaI AGTACT 3 cut(s) 25, 31, 98
SchI GAGTC 3 cut(s) 406, 973, 1519
ScrFI CCNGG 1 cut(s) 603
SduI GDGCHC 5 cut(s) 227, 370, 690, 1092, 1856
SinI GGWCC 4 cut(s) 416, 898, 1478, 1807
SmiMI CAYNNNNRTG 4 cut(s) 722, 1220, 1269, 1834
SpeI ACTAGT 4 cut(s) 26, 32, 527, 620
SphI GCATGC 1 cut(s) 1538
SsiI CCGC 7 cut(s) 514, 572, 938, 989, 1151, 1541, 1661
SspMI CTAG 9 cut(s) 21, 27, 33, 305, 528, 621, 786, 1637, 1728
StyD4I CCNGG 1 cut(s) 601
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 1 cut(s) 493
TaqI TCGA 1 cut(s) 193
TaqII GACCGA 1 cut(s) 433
TatI WGTACW 3 cut(s) 23, 29, 96
TauI GCSGC 2 cut(s) 575, 992
TfiI GAWTC 4 cut(s) 147, 180, 1379, 1450
Tru1I TTAA 3 cut(s) 237, 831, 1656
Tru9I TTAA 3 cut(s) 237, 831, 1656
TscAI CASTG 1 cut(s) 339
TseI GCWGC 4 cut(s) 154, 347, 1427, 1538
TspDTI ATGAA 8 cut(s) 261, 459, 968, 1218, 1260, 1289, 1511, 1587
TspGWI ACGGA 1 cut(s) 755
TspRI CASTG 1 cut(s) 339
Van91I CCANNNNNTGG 1 cut(s) 383
VneI GTGCAC 1 cut(s) 223
VpaK11BI GGWCC 4 cut(s) 416, 898, 1478, 1807
XapI RAATTY 4 cut(s) 463, 766, 1118, 1309
XceI RCATGY 2 cut(s) 1538, 1601
XmiI GTMKAC 1 cut(s) 1724
XmnI GAANNNNTTC 1 cut(s) 1140
XspI CTAG 9 cut(s) 21, 27, 33, 305, 528, 621, 786, 1637, 1728
ZrmI AGTACT 3 cut(s) 25, 31, 98
Zsp2I ATGCAT 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.