Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002052

Physical Location & Seq

Genomic Coordinates Forward (+)

53717943 .. 53719153

Gene Structure 1211 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58681

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAGTTCTAGTACTAGTGGGACAACAAAGAAAGATCATGCTTGGCGATGGACTAAACCAATTCCCGGAGAGTTGAAGTACTTTTTGTGTGCATTTTGTGATCAAAGAAATACTGGTGGCATCTTCAGGTTCAAGCAGCATTTAGTTGGCACTCATAAGGGAATCAAACCTTGTAACAAAGTTCCACCAAATGTGAAAGATTGGTGCACTATAGCGCTTAAAAGAAATGATGAAGAGAAACGAGCAAGGATTGCTGTGCATCGGGAGATAGGGGGATTGGAAAGTCTAGAAGAAGATGATGCAGATGATCATGAGATGACAAATGTGGCTGCAAGTGAGAGTGGTAGTGCTCAAACTCCACTTGGTGGTGGTTCTACGGGTCAACCGAAGGCTAGAGGACCGATGGACAAGTTTGTATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

140

Amino Acids

15.4

Weight (kDa)

8.71

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36095 AT5G33406
fragaria_vesca	FvH4_2g19761 FvH4_2g31910 FvH4_3g32805 FvH4_3g33921 FvH4_3g33922 FvH4_4g11993 FvH4_5g36511 FvH4_6g16931 FvH4_6g16931
malus_domestica	MD01G1106300.v1.1 MD01G1106700.v1.1 MD08G1077600.v1.1
pyrus_communis	pycom01g13300 pycom06g05900 pycom12g14200 pycom13g27730 pycom16g16790
rosa_chinensis	RchiOBHm_Chr1g0361961 RchiOBHm_Chr1g0361981 RchiOBHm_Chr2g0141951 RchiOBHm_Chr7g0218361
rosa_multiflora	Rmu_co8147950.1_g000001 Rmu_co8356159.1_g000001 Rmu_sc0000117.1_g000022 Rmu_sc0007718.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097000 Rroxscaffold_2G00126330 Rroxscaffold_4G00304630 Rroxscaffold_5G00366570 Rroxscaffold_5G00366580
rosa_rugosa	Rorug03G0268800 Rorug03G0268900 Rorug05G0477700 Rorug05G0477800 RorugPtG0003500.1
rosa_samantha	Rh1AG259100 Rh4AG027200 Rh7CG313700
rosa_wichuraiana	Rw0G004680 Rw1G026970 Rw4G019360 Rw6G028600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	365
AcuI	CTGAAG	1 cut(s)	109
AdeI	CACNNNGTG	1 cut(s)	365
AfaI	GTAC	2 cut(s)	13, 80
AfeI	AGCGCT	1 cut(s)	216
AfiI	CCNNNNNNNGG	2 cut(s)	65, 365
AgsI	TTSAA	2 cut(s)	76, 133
AhlI	ACTAGT	1 cut(s)	14
Alw21I	GWGCWC	2 cut(s)	209, 352
Alw44I	GTGCAC	1 cut(s)	205
Aor51HI	AGCGCT	1 cut(s)	216
ApaLI	GTGCAC	1 cut(s)	205
ApeKI	GCWGC	2 cut(s)	136, 329
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	398
AsuC2I	CCSGG	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	398
BaeGI	GKGCMC	1 cut(s)	209
Bbv12I	GWGCWC	2 cut(s)	209, 352
BbvI	GCAGC	2 cut(s)	148, 316
BccI	CCATC	2 cut(s)	42, 397
BclI	TGATCA	2 cut(s)	100, 307
BcnI	CCSGG	1 cut(s)	66
BcuI	ACTAGT	1 cut(s)	14
BfaI	CTAG	4 cut(s)	9, 15, 287, 393
BfmI	CTRYAG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	218
BisI	GCNGC	2 cut(s)	137, 330
BlsI	GCNGC	2 cut(s)	138, 331
BmcAI	AGTACT	2 cut(s)	13, 80
Bme1390I	CCNGG	1 cut(s)	66
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	398
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	3 cut(s)	129, 268, 289
BpuMI	CCSGG	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 365
Bse1I	ACTGG	1 cut(s)	118
BseLI	CCNNNNNNNGG	2 cut(s)	65, 365
BseNI	ACTGG	1 cut(s)	118
BseSI	GKGCMC	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	148, 316
BsiHKAI	GWGCWC	2 cut(s)	209, 352
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	2 cut(s)	65, 365
BsmFI	GGGAC	1 cut(s)	34
Bsp1286I	GDGCHC	2 cut(s)	209, 352
Bsp143I	GATC	3 cut(s)	34, 100, 307
BspHI	TCATGA	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	118
BssMI	GATC	3 cut(s)	34, 100, 307
Bst6I	CTCTTC	1 cut(s)	228
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	3 cut(s)	37, 103, 310
BstMBI	GATC	3 cut(s)	34, 100, 307
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	210
BstSLI	GKGCMC	1 cut(s)	209
BstV1I	GCAGC	2 cut(s)	148, 316
BtgZI	GCGATG	1 cut(s)	61
CciI	TCATGA	1 cut(s)	310
CfoI	GCGC	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	398
Csp6I	GTAC	2 cut(s)	12, 79
CviAII	CATG	2 cut(s)	38, 311
CviJI	RGCY	2 cut(s)	329, 392
CviKI_1	RGCY	2 cut(s)	329, 392
CviQI	GTAC	2 cut(s)	12, 79
DpnI	GATC	3 cut(s)	36, 102, 309
DpnII	GATC	3 cut(s)	34, 100, 307
DraIII	CACNNNGTG	1 cut(s)	365
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	398
Eco47III	AGCGCT	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	109
FaeI	CATG	2 cut(s)	41, 314
FaiI	YATR	4 cut(s)	39, 156, 212, 312
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	2 cut(s)	37, 310
FbaI	TGATCA	2 cut(s)	100, 307
Fnu4HI	GCNGC	2 cut(s)	137, 330
Fsp4HI	GCNGC	2 cut(s)	137, 330
FspBI	CTAG	4 cut(s)	9, 15, 287, 393
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	2 cut(s)	137, 330
HaeII	RGCGCY	1 cut(s)	218
HapII	CCGG	1 cut(s)	66
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	2 cut(s)	41, 314
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HincII	GTYRAC	1 cut(s)	383
HindII	GTYRAC	1 cut(s)	383
HinfI	GANTC	1 cut(s)	162
HpaII	CCGG	1 cut(s)	66
Hpy166II	GTNNAC	2 cut(s)	207, 383
Hpy188III	TCNNGA	3 cut(s)	263, 287, 311
Hpy8I	GTNNAC	2 cut(s)	207, 383
HpyAV	CCTTC	1 cut(s)	382
HpyCH4V	TGCA	5 cut(s)	92, 207, 259, 302, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
Hsp92II	CATG	2 cut(s)	41, 314
HspAI	GCGC	1 cut(s)	215
Ksp22I	TGATCA	2 cut(s)	100, 307
Kzo9I	GATC	3 cut(s)	34, 100, 307
LpnPI	CCDG	3 cut(s)	79, 99, 112
Lsp1109I	GCAGC	2 cut(s)	148, 316
LweI	GCATC	3 cut(s)	129, 268, 289
MaeI	CTAG	4 cut(s)	9, 15, 287, 393
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	3 cut(s)	36, 102, 309
MboI	GATC	3 cut(s)	34, 100, 307
MboII	GAAGA	4 cut(s)	115, 245, 302, 305
MhlI	GDGCHC	2 cut(s)	209, 352
MluCI	AATT	1 cut(s)	60
MnlI	CCTC	1 cut(s)	389
MseI	TTAA	1 cut(s)	219
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	251
NciI	CCSGG	1 cut(s)	66
NdeII	GATC	3 cut(s)	34, 100, 307
NlaIII	CATG	2 cut(s)	41, 314
PagI	TCATGA	1 cut(s)	310
PcsI	WCGNNNNNNNCGW	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	162
PflMI	CCANNNNNTGG	1 cut(s)	365
PfoI	TCCNGGA	1 cut(s)	64
PkrI	GCNGC	2 cut(s)	138, 331
PspPI	GGNCC	1 cut(s)	398
RsaI	GTAC	2 cut(s)	13, 80
RsaNI	GTAC	2 cut(s)	12, 79
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	2 cut(s)	137, 330
Sau3AI	GATC	3 cut(s)	34, 100, 307
Sau96I	GGNCC	1 cut(s)	398
ScaI	AGTACT	2 cut(s)	13, 80
ScrFI	CCNGG	1 cut(s)	66
SduI	GDGCHC	2 cut(s)	209, 352
SetI	ASST	2 cut(s)	131, 172
SfaNI	GCATC	3 cut(s)	129, 268, 289
SfcI	CTRYAG	1 cut(s)	210
SinI	GGWCC	1 cut(s)	398
SpeI	ACTAGT	1 cut(s)	14
Sse9I	AATT	1 cut(s)	60
SspMI	CTAG	4 cut(s)	9, 15, 287, 393
StyD4I	CCNGG	1 cut(s)	64
TaqII	GACCGA	1 cut(s)	415
TasI	AATT	1 cut(s)	60
TatI	WGTACW	2 cut(s)	11, 78
TfiI	GAWTC	1 cut(s)	162
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TseI	GCWGC	2 cut(s)	136, 329
TspDTI	ATGAA	1 cut(s)	246
Van91I	CCANNNNNTGG	1 cut(s)	365
VneI	GTGCAC	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	398
XbaI	TCTAGA	1 cut(s)	286
XspI	CTAG	4 cut(s)	9, 15, 287, 393
ZrmI	AGTACT	2 cut(s)	13, 80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.