Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002052

Physical Location & Seq

Genomic Coordinates Forward (+)

26418304 .. 26419119

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0268800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGACCGACCCAGATTCGTAATTGAAGCCTCGGTGGCCGAGTCAATGGCCAAGCAGAAGGCCCTCATCGTCGTGCAACTCCTCCCGTCCTTCGTCGAGTCCCCATCTCCAAATTCCCCGTCGGAGCCCTCGGGTACGGGTCCTCGGGTGGGCTCTTCTTCGGAGTCAACCTCGAGTTCCAAGGCCTCTGCCTCCACTACTCCGTCCACGCTGAGCAGTTCCTCGTCACCGCCGCCCTCTGCGGCCATTGCCACCAATTCTTCCAAGAAATTCTCCGAGCCCAGGACATCAAGATCCTCATCACCTCTGTCGAGCCCAGAGAAGACGATGGAGACAAAAATGACACGTCGTGCGGCCAATTCAGCCCCCTCCGCCACCTCATCCCCCATTGGTTCGGCCCTAAAGACTTCCTCGGCAAGGACGTGCCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

143

Amino Acids

14.58

Weight (kDa)

10.21

Isoelectric Point (pI)

89.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36095 AT5G33406
fragaria_vesca	FvH4_2g19761 FvH4_2g31910 FvH4_3g32805 FvH4_3g33921 FvH4_3g33922 FvH4_4g11993 FvH4_5g36511 FvH4_6g16931 FvH4_6g16931
malus_domestica	MD01G1106300.v1.1 MD01G1106700.v1.1 MD08G1077600.v1.1
pyrus_communis	pycom01g13300 pycom06g05900 pycom12g14200 pycom13g27730 pycom16g16790
rosa_chinensis	RchiOBHm_Chr1g0361961 RchiOBHm_Chr1g0361981 RchiOBHm_Chr2g0141951 RchiOBHm_Chr7g0218361
rosa_multiflora	Rmu_co8147950.1_g000001 Rmu_co8356159.1_g000001 Rmu_sc0000117.1_g000022 Rmu_sc0007718.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097000 Rroxscaffold_2G00126330 Rroxscaffold_4G00304630 Rroxscaffold_5G00366570 Rroxscaffold_5G00366580
rosa_rugosa	Rorug03G0268800 Rorug03G0268900 Rorug05G0477700 Rorug05G0477800 RorugPtG0003500.1
rosa_samantha	Rh1AG259100 Rh4AG027200 Rh7CG313700
rosa_wichuraiana	Rw0G004680 Rw1G026970 Rw4G019360 Rw6G028600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	230, 233, 242, 353, 372
AclWI	GGATC	1 cut(s)	288
AcoI	YGGCCR	4 cut(s)	36, 48, 243, 354
AcsI	RAATTY	2 cut(s)	112, 269
AdeI	CACNNNGTG	1 cut(s)	350
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	3 cut(s)	149, 282, 417
AflIII	ACRYGT	1 cut(s)	344
AgsI	TTSAA	1 cut(s)	26
AjiI	CACGTC	2 cut(s)	347, 423
AjnI	CCWGG	1 cut(s)	281
Alw26I	GTCTC	1 cut(s)	326
AlwI	GGATC	1 cut(s)	288
Ama87I	CYCGRG	3 cut(s)	130, 144, 172
AoxI	GGCC	7 cut(s)	36, 48, 60, 183, 243, 354, 396
ApoI	RAATTY	2 cut(s)	112, 269
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspS9I	GGNCC	4 cut(s)	4, 61, 140, 397
AsuHPI	GGTGA	2 cut(s)	219, 294
AvaI	CYCGRG	3 cut(s)	130, 144, 172
AvaII	GGWCC	2 cut(s)	4, 140
BaeGI	GKGCMC	1 cut(s)	428
BalI	TGGCCA	1 cut(s)	50
BanII	GRGCYC	4 cut(s)	129, 155, 282, 317
BbsI	GAAGAC	1 cut(s)	329
BccI	CCATC	2 cut(s)	112, 322
BciT130I	CCWGG	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	326
BglI	GCCNNNNNGGC	1 cut(s)	35
BisI	GCNGC	3 cut(s)	233, 243, 354
BlpI	GCTNAGC	1 cut(s)	212
BlsI	GCNGC	3 cut(s)	234, 244, 355
Bme1390I	CCNGG	1 cut(s)	283
Bme18I	GGWCC	2 cut(s)	4, 140
BmeT110I	CYCGRG	3 cut(s)	130, 144, 172
BmgBI	CACGTC	2 cut(s)	347, 423
BmgT120I	GGNCC	4 cut(s)	4, 61, 140, 397
BmiI	GGNNCC	2 cut(s)	126, 141
BmrFI	CCNGG	1 cut(s)	283
BpiI	GAAGAC	1 cut(s)	329
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
Bpu1102I	GCTNAGC	1 cut(s)	212
BsaBI	GATNNNNATC	1 cut(s)	298
BsaJI	CCNNGG	6 cut(s)	30, 129, 143, 180, 281, 411
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 282, 417
Bse3DI	GCAATG	1 cut(s)	246
Bse8I	GATNNNNATC	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	283
BseDI	CCNNGG	6 cut(s)	30, 129, 143, 180, 281, 411
BseGI	GGATG	1 cut(s)	380
BseJI	GATNNNNATC	1 cut(s)	298
BseLI	CCNNNNNNNGG	3 cut(s)	149, 282, 417
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	71
BseSI	GKGCMC	1 cut(s)	428
BshFI	GGCC	7 cut(s)	38, 50, 62, 185, 245, 356, 398
BsiHKCI	CYCGRG	3 cut(s)	130, 144, 172
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	3 cut(s)	149, 282, 417
BsmAI	GTCTC	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	85
BsnI	GGCC	7 cut(s)	38, 50, 62, 185, 245, 356, 398
BsoBI	CYCGRG	3 cut(s)	130, 144, 172
Bsp1286I	GDGCHC	5 cut(s)	129, 155, 282, 317, 428
Bsp143I	GATC	1 cut(s)	293
Bsp1720I	GCTNAGC	1 cut(s)	212
BspACI	CCGC	5 cut(s)	230, 233, 242, 353, 372
BspANI	GGCC	7 cut(s)	38, 50, 62, 185, 245, 356, 398
BspCNI	CTCAG	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	126, 141
BspPI	GGATC	1 cut(s)	288
BspQI	GCTCTTC	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	246
BssECI	CCNNGG	6 cut(s)	30, 129, 143, 180, 281, 411
BssMI	GATC	1 cut(s)	293
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	283
Bst6I	CTCTTC	1 cut(s)	160
BstDEI	CTNAG	2 cut(s)	212, 429
BstENI	CCTNNNNNAGG	1 cut(s)	415
BstF5I	GGATG	1 cut(s)	380
BstKTI	GATC	1 cut(s)	296
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 248, 362, 371
BstNI	CCWGG	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	281
BstSLI	GKGCMC	1 cut(s)	428
BstV2I	GAAGAC	1 cut(s)	329
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BsuRI	GGCC	7 cut(s)	38, 50, 62, 185, 245, 356, 398
BtrI	CACGTC	2 cut(s)	347, 423
BtsCI	GGATG	1 cut(s)	380
Cfr13I	GGNCC	4 cut(s)	4, 61, 140, 397
Csp6I	GTAC	1 cut(s)	135
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	2 cut(s)	212, 429
DpnI	GATC	1 cut(s)	295
DpnII	GATC	1 cut(s)	293
DraIII	CACNNNGTG	1 cut(s)	350
EaeI	YGGCCR	4 cut(s)	36, 48, 243, 354
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
EciI	GGCGGA	1 cut(s)	361
Eco130I	CCWWGG	1 cut(s)	180
Eco147I	AGGCCT	1 cut(s)	185
Eco24I	GRGCYC	4 cut(s)	129, 155, 282, 317
Eco47I	GGWCC	2 cut(s)	4, 140
Eco88I	CYCGRG	3 cut(s)	130, 144, 172
EcoNI	CCTNNNNNAGG	1 cut(s)	415
EcoO109I	RGGNCCY	2 cut(s)	61, 140
EcoRII	CCWGG	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	4 cut(s)	129, 155, 282, 317
ErhI	CCWWGG	1 cut(s)	180
FaqI	GGGAC	1 cut(s)	85
Fnu4HI	GCNGC	3 cut(s)	233, 243, 354
FokI	GGATG	1 cut(s)	367
FriOI	GRGCYC	4 cut(s)	129, 155, 282, 317
Fsp4HI	GCNGC	3 cut(s)	233, 243, 354
GluI	GCNGC	3 cut(s)	233, 243, 354
HaeIII	GGCC	7 cut(s)	38, 50, 62, 185, 245, 356, 398
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HinfI	GANTC	4 cut(s)	15, 41, 98, 164
HphI	GGTGA	2 cut(s)	219, 294
Hpy166II	GTNNAC	2 cut(s)	168, 207
Hpy188I	TCNGA	3 cut(s)	124, 163, 277
Hpy188III	TCNNGA	1 cut(s)	291
Hpy8I	GTNNAC	2 cut(s)	168, 207
Hpy99I	CGWCG	4 cut(s)	74, 98, 124, 351
HpyAV	CCTTC	2 cut(s)	52, 100
HpyCH4IV	ACGT	2 cut(s)	346, 422
HpyCH4V	TGCA	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 248, 362, 371
HpyF3I	CTNAG	2 cut(s)	212, 429
HpySE526I	ACGT	2 cut(s)	346, 422
Kzo9I	GATC	1 cut(s)	293
LguI	GCTCTTC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	4 cut(s)	25, 268, 295, 330
MaeII	ACGT	2 cut(s)	346, 422
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	1 cut(s)	295
MboI	GATC	1 cut(s)	293
MboII	GAAGA	4 cut(s)	147, 150, 252, 334
MflI	RGATCY	1 cut(s)	293
MhlI	GDGCHC	5 cut(s)	129, 155, 282, 317, 428
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	5 cut(s)	21, 112, 256, 269, 358
MluNI	TGGCCA	1 cut(s)	50
MlyI	GAGTC	3 cut(s)	50, 107, 173
MmeI	TCCRAC	1 cut(s)	102
Mox20I	TGGCCA	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	50
MslI	CAYNNNNRTG	1 cut(s)	71
Msp20I	TGGCCA	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	283
MwoI	GCNNNNNNNGC	4 cut(s)	35, 248, 362, 371
NdeII	GATC	1 cut(s)	293
NlaIV	GGNNCC	2 cut(s)	126, 141
NmeAIII	GCCGAG	2 cut(s)	64, 392
NmuCI	GTSAC	1 cut(s)	225
PaeR7I	CTCGAG	1 cut(s)	172
PceI	AGGCCT	1 cut(s)	185
PciSI	GCTCTTC	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	1 cut(s)	419
PfeI	GAWTC	1 cut(s)	15
PkrI	GCNGC	3 cut(s)	234, 244, 355
PleI	GAGTC	3 cut(s)	49, 106, 172
PpsI	GAGTC	3 cut(s)	49, 106, 172
PpuMI	RGGWCCY	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	281
PspN4I	GGNNCC	2 cut(s)	126, 141
PspPI	GGNCC	4 cut(s)	4, 61, 140, 397
PspPPI	RGGWCCY	1 cut(s)	140
PspXI	VCTCGAGB	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	293
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	71
SapI	GCTCTTC	1 cut(s)	160
SatI	GCNGC	3 cut(s)	233, 243, 354
Sau3AI	GATC	1 cut(s)	293
Sau96I	GGNCC	4 cut(s)	4, 61, 140, 397
SchI	GAGTC	3 cut(s)	50, 107, 173
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	5 cut(s)	129, 155, 282, 317, 428
SetI	ASST	5 cut(s)	173, 307, 349, 380, 425
Sfr274I	CTCGAG	1 cut(s)	172
SinI	GGWCC	2 cut(s)	4, 140
SlaI	CTCGAG	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
Sse9I	AATT	5 cut(s)	21, 112, 256, 269, 358
SseBI	AGGCCT	1 cut(s)	185
SsiI	CCGC	5 cut(s)	230, 233, 242, 353, 372
StuI	AGGCCT	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	281
StyI	CCWWGG	1 cut(s)	180
TaiI	ACGT	2 cut(s)	349, 425
TaqI	TCGA	3 cut(s)	96, 173, 311
TaqII	GACCGA	1 cut(s)	21
TasI	AATT	5 cut(s)	21, 112, 256, 269, 358
TauI	GCSGC	3 cut(s)	235, 245, 356
TfiI	GAWTC	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	225
Tsp45I	GTSAC	1 cut(s)	225
TspGWI	ACGGA	1 cut(s)	192
VpaK11BI	GGWCC	2 cut(s)	4, 140
XagI	CCTNNNNNAGG	1 cut(s)	415
XapI	RAATTY	2 cut(s)	112, 269
XhoI	CTCGAG	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.