Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002052

Physical Location & Seq

Genomic Coordinates Reverse (-)

24325407 .. 24326362

Gene Structure 956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTAAGTTTTGGCTCGATTCTAAAAGGCGTCGCCTTGCCCCGCCCAGGCTGTAGGGGAGTTAAGCCATCCGGATTTTCCCCAAGTCGTCCAAGGAAGGCGGCCAGCTGCCCAGGGACCGCCTATGCGGTGCCTAGGCGGAGAAGGCGCATCCGAGGCAGCCAAGGACTAAGCGAACCAGGCTCCGACCTCGTTGTCCCGCCTTTGCCAATCTCAGCATCTCGCCGTTCTCAGCTCGCTTTCGACGTCACCGCACTCAACTCACCATCGACCTCGCCGCTCTTGGCGTCATCTATTGATTCTTGGGAGTTGTTGTGTGGTGATTATGATGAGCATTCAAGAGTTAAGGGTGCTTTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

12.7

Weight (kDa)

10.54

Isoelectric Point (pI)

80.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36095 AT5G33406
fragaria_vesca	FvH4_2g19761 FvH4_2g31910 FvH4_3g32805 FvH4_3g33921 FvH4_3g33922 FvH4_4g11993 FvH4_5g36511 FvH4_6g16931 FvH4_6g16931
malus_domestica	MD01G1106300.v1.1 MD01G1106700.v1.1 MD08G1077600.v1.1
pyrus_communis	pycom01g13300 pycom06g05900 pycom12g14200 pycom13g27730 pycom16g16790
rosa_chinensis	RchiOBHm_Chr1g0361961 RchiOBHm_Chr1g0361981 RchiOBHm_Chr2g0141951 RchiOBHm_Chr7g0218361
rosa_multiflora	Rmu_co8147950.1_g000001 Rmu_co8356159.1_g000001 Rmu_sc0000117.1_g000022 Rmu_sc0007718.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097000 Rroxscaffold_2G00126330 Rroxscaffold_4G00304630 Rroxscaffold_5G00366570 Rroxscaffold_5G00366580
rosa_rugosa	Rorug03G0268800 Rorug03G0268900 Rorug05G0477700 Rorug05G0477800 RorugPtG0003500.1
rosa_samantha	Rh1AG259100 Rh4AG027200 Rh7CG313700
rosa_wichuraiana	Rw0G004680 Rw1G026970 Rw4G019360 Rw6G028600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	194
AatII	GACGTC	1 cut(s)	249
AccB1I	GGYRCC	1 cut(s)	130
AccBSI	CCGCTC	1 cut(s)	280
AccIII	TCCGGA	1 cut(s)	71
AciI	CCGC	8 cut(s)	43, 101, 120, 128, 139, 200, 252, 278
AcoI	YGGCCR	1 cut(s)	102
AcyI	GRCGYC	3 cut(s)	30, 246, 287
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgsI	TTSAA	2 cut(s)	339, 358
AjnI	CCWGG	3 cut(s)	46, 112, 178
AluBI	AGCT	2 cut(s)	108, 235
AluI	AGCT	2 cut(s)	108, 235
Aor13HI	TCCGGA	1 cut(s)	71
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	2 cut(s)	108, 159
AspA2I	CCTAGG	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	117
AsuHPI	GGTGA	3 cut(s)	241, 255, 332
AvaII	GGWCC	1 cut(s)	117
AvrII	CCTAGG	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	130
BbvI	GCAGC	2 cut(s)	95, 171
BccI	CCATC	2 cut(s)	76, 274
BceAI	ACGGC	1 cut(s)	210
BciT130I	CCWGG	3 cut(s)	48, 114, 180
BfaI	CTAG	1 cut(s)	135
BfmI	CTRYAG	1 cut(s)	52
BisI	GCNGC	4 cut(s)	102, 109, 160, 278
BlnI	CCTAGG	1 cut(s)	134
BlsI	GCNGC	4 cut(s)	103, 110, 161, 279
Bme1390I	CCNGG	3 cut(s)	48, 114, 180
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	3 cut(s)	118, 132, 184
BmrFI	CCNGG	3 cut(s)	48, 114, 180
BmsI	GCATC	2 cut(s)	159, 227
BsaHI	GRCGYC	3 cut(s)	30, 246, 287
BsaJI	CCNNGG	7 cut(s)	46, 92, 112, 113, 134, 154, 163
BsaWI	WCCGGW	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
BseAI	TCCGGA	1 cut(s)	71
BseBI	CCWGG	3 cut(s)	48, 114, 180
BseDI	CCNNGG	7 cut(s)	46, 92, 112, 113, 134, 154, 163
BseGI	GGATG	2 cut(s)	68, 150
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseMII	CTCAG	2 cut(s)	228, 245
BseXI	GCAGC	2 cut(s)	95, 171
BshFI	GGCC	1 cut(s)	104
BshNI	GGYRCC	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	2 cut(s)	130, 182
BslI	CCNNNNNNNGG	1 cut(s)	47
BsmFI	GGGAC	2 cut(s)	130, 182
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	104
Bsp13I	TCCGGA	1 cut(s)	71
BspACI	CCGC	8 cut(s)	43, 101, 120, 128, 139, 200, 252, 278
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	2 cut(s)	227, 244
BspEI	TCCGGA	1 cut(s)	71
BspLI	GGNNCC	3 cut(s)	118, 132, 184
BspT107I	GGYRCC	1 cut(s)	130
BsrBI	CCGCTC	1 cut(s)	280
BssECI	CCNNGG	7 cut(s)	46, 92, 112, 113, 134, 154, 163
BssNI	GRCGYC	3 cut(s)	30, 246, 287
BssT1I	CCWWGG	3 cut(s)	92, 134, 163
Bst2UI	CCWGG	3 cut(s)	48, 114, 180
BstACI	GRCGYC	3 cut(s)	30, 246, 287
BstC8I	GCNNGC	2 cut(s)	106, 237
BstDEI	CTNAG	3 cut(s)	170, 214, 231
BstF5I	GGATG	2 cut(s)	68, 150
BstHHI	GCGC	1 cut(s)	150
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 156, 180
BstNI	CCWGG	3 cut(s)	48, 114, 180
BstSCI	CCNGG	3 cut(s)	46, 112, 178
BstSFI	CTRYAG	1 cut(s)	52
BstV1I	GCAGC	2 cut(s)	95, 171
BsuRI	GGCC	1 cut(s)	104
BtsCI	GGATG	2 cut(s)	68, 150
Cac8I	GCNNGC	2 cut(s)	106, 237
CfoI	GCGC	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	117
CseI	GACGC	2 cut(s)	19, 276
CviJI	RGCY	8 cut(s)	15, 51, 67, 104, 108, 162, 183, 235
CviKI_1	RGCY	8 cut(s)	15, 51, 67, 104, 108, 162, 183, 235
DdeI	CTNAG	3 cut(s)	170, 214, 231
DrdI	GACNNNNNNGTC	1 cut(s)	194
DseDI	GACNNNNNNGTC	1 cut(s)	194
EaeI	YGGCCR	1 cut(s)	102
EciI	GGCGGA	1 cut(s)	154
Eco130I	CCWWGG	3 cut(s)	92, 134, 163
Eco47I	GGWCC	1 cut(s)	117
EcoRII	CCWGG	3 cut(s)	46, 112, 178
EcoT14I	CCWWGG	3 cut(s)	92, 134, 163
ErhI	CCWWGG	3 cut(s)	92, 134, 163
FaiI	YATR	2 cut(s)	126, 327
FaqI	GGGAC	2 cut(s)	130, 182
FauI	CCCGC	2 cut(s)	50, 207
Fnu4HI	GCNGC	4 cut(s)	102, 109, 160, 278
FokI	GGATG	2 cut(s)	55, 137
Fsp4HI	GCNGC	4 cut(s)	102, 109, 160, 278
FspBI	CTAG	1 cut(s)	135
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	4 cut(s)	102, 109, 160, 278
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	2 cut(s)	19, 276
HhaI	GCGC	1 cut(s)	150
Hin1I	GRCGYC	3 cut(s)	30, 246, 287
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HinfI	GANTC	2 cut(s)	19, 299
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	3 cut(s)	241, 255, 332
Hpy188I	TCNGA	2 cut(s)	155, 187
Hpy188III	TCNNGA	2 cut(s)	72, 339
Hpy99I	CGWCG	2 cut(s)	35, 248
HpyAV	CCTTC	2 cut(s)	91, 138
HpyCH4IV	ACGT	1 cut(s)	246
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 156, 180
HpyF3I	CTNAG	3 cut(s)	170, 214, 231
HpySE526I	ACGT	1 cut(s)	246
Hsp92I	GRCGYC	3 cut(s)	30, 246, 287
HspAI	GCGC	1 cut(s)	148
Kpn2I	TCCGGA	1 cut(s)	71
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	8 cut(s)	33, 60, 85, 99, 118, 126, 165, 192
Lsp1109I	GCAGC	2 cut(s)	95, 171
LweI	GCATC	2 cut(s)	159, 227
MaeI	CTAG	1 cut(s)	135
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	247
MbiI	CCGCTC	1 cut(s)	280
MluCI	AATT	1 cut(s)	358
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	3 cut(s)	149, 200, 283
MroI	TCCGGA	1 cut(s)	71
MseI	TTAA	2 cut(s)	63, 345
MspA1I	CMGCKG	1 cut(s)	108
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	3 cut(s)	48, 114, 180
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	3 cut(s)	48, 114, 180
MwoI	GCNNNNNNNGC	3 cut(s)	145, 156, 180
NlaIV	GGNNCC	3 cut(s)	118, 132, 184
NmuCI	GTSAC	1 cut(s)	247
PasI	CCCWGGG	1 cut(s)	113
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PctI	GAATGC	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	19, 299
PkrI	GCNGC	4 cut(s)	103, 110, 161, 279
Psp6I	CCWGG	3 cut(s)	46, 112, 178
PspGI	CCWGG	3 cut(s)	46, 112, 178
PspN4I	GGNNCC	3 cut(s)	118, 132, 184
PspPI	GGNCC	1 cut(s)	117
PvuII	CAGCTG	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	63, 345
SatI	GCNGC	4 cut(s)	102, 109, 160, 278
Sau96I	GGNCC	1 cut(s)	117
ScrFI	CCNGG	3 cut(s)	48, 114, 180
SetI	ASST	5 cut(s)	110, 192, 237, 249, 275
SfaNI	GCATC	2 cut(s)	159, 227
SfcI	CTRYAG	1 cut(s)	52
SinI	GGWCC	1 cut(s)	117
Sse9I	AATT	1 cut(s)	358
SsiI	CCGC	8 cut(s)	43, 101, 120, 128, 139, 200, 252, 278
SspMI	CTAG	1 cut(s)	135
StyD4I	CCNGG	3 cut(s)	46, 112, 178
StyI	CCWWGG	3 cut(s)	92, 134, 163
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	3 cut(s)	17, 243, 269
TasI	AATT	1 cut(s)	358
TauI	GCSGC	2 cut(s)	104, 280
TfiI	GAWTC	2 cut(s)	19, 299
Tru1I	TTAA	2 cut(s)	63, 345
Tru9I	TTAA	2 cut(s)	63, 345
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	2 cut(s)	108, 159
Tsp45I	GTSAC	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	117
XmaJI	CCTAGG	1 cut(s)	134
XspI	CTAG	1 cut(s)	135
ZraI	GACGTC	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.