MD01G1106700.v1.1

hAT family C-terminal dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0002052
Physical Location & Seq
Forward (+)
21966393 .. 21967775
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1106700.v1.1.491

Sequence Viewer

Length: 630 bp
ATGATGTTTGCCATACGTGTTCTTGGCCTTACTTGTAGTGCATCGGGATGTGAGAGGAATTGGAGCACATTCCAAATGATTCATAAAAAAAAGAGGAATAGACTTGAACACAAAAGGCTAAATGCTTTAGCATATGTGAAGTATAATTTGGCTTTAAGCGAGCGAAGTCTTAAAAGAAGTGGGAGGTGTGATCCAATTGTTGTAGAAGAAATTGACTCGGATGATGAATGGATAACGGAACGAGAAGATCCCGTTCTTCCCCAAGATCCTAGACGGGTTGAAGATGGGTCATTGTTCAATGCGGAGGCCGTAAGGAATGTGCCAATCCCCATTTATGAAGATAACTCACAAGTTGGAGACCCTAGAGAGCCTTCTCCTCCTCCTCCTCGTGAGCCTACTCCTCTCTGTGAACTTACTCCGCCCCATGAGCCAACTCAACCTCGAGTTCTTTTTACCTACAAAAGAAAACGCATTAATGAGGAAACCTCGAGTCGAAGAAACAAAATTTTGAAGGATAAGTCAGAAGATTCTTTTGAAGACTATTTGACACACCGTTCAAGTTCAACTAGACTTGGCAATGAAGAAGATGATATTACCTTTGATTTGGATGAAGAGGATTTGAGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

210

Amino Acids

24.27

Weight (kDa)

5.15

Isoelectric Point (pI)

70.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 3 - 50 3.1e-06 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 302, 419
AclWI GGATC 3 cut(s) 185, 242, 260
AcsI RAATTY 1 cut(s) 504
AflIII ACRYGT 1 cut(s) 16
AgsI TTSAA 7 cut(s) 107, 281, 298, 511, 536, 558, 564
AjuI GAANNNNNNNTTGG 2 cut(s) 131, 163
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 351
AlwI GGATC 3 cut(s) 185, 242, 260
Ama87I CYCGRG 2 cut(s) 441, 487
AoxI GGCC 2 cut(s) 25, 306
ApoI RAATTY 1 cut(s) 504
AseI ATTAAT 1 cut(s) 474
AvaI CYCGRG 2 cut(s) 441, 487
BauI CACGAG 1 cut(s) 387
BbsI GAAGAC 1 cut(s) 543
Bbv12I GWGCWC 1 cut(s) 68
BccI CCATC 1 cut(s) 278
BceAI ACGGC 1 cut(s) 293
BcoDI GTCTC 1 cut(s) 351
BfaI CTAG 3 cut(s) 270, 363, 567
BmeT110I CYCGRG 2 cut(s) 441, 487
BmsI GCATC 1 cut(s) 50
BpiI GAAGAC 1 cut(s) 543
BplI GAGNNNNNCTC 2 cut(s) 470, 502
BsaAI YACGTR 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 583
BseGI GGATG 3 cut(s) 53, 226, 613
BseMI GCAATG 1 cut(s) 583
BseRI GAGGAG 5 cut(s) 366, 369, 372, 375, 390
BshFI GGCC 2 cut(s) 27, 308
BsiHKAI GWGCWC 1 cut(s) 68
BsiHKCI CYCGRG 2 cut(s) 441, 487
BsmAI GTCTC 1 cut(s) 351
BsnI GGCC 2 cut(s) 27, 308
Bso31I GGTCTC 1 cut(s) 351
BsoBI CYCGRG 2 cut(s) 441, 487
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 3 cut(s) 190, 247, 265
BspACI CCGC 2 cut(s) 302, 419
BspANI GGCC 2 cut(s) 27, 308
BspPI GGATC 3 cut(s) 185, 242, 260
BspTNI GGTCTC 1 cut(s) 351
BsrDI GCAATG 1 cut(s) 583
BssMI GATC 3 cut(s) 190, 247, 265
BssSI CACGAG 1 cut(s) 387
Bst2BI CACGAG 1 cut(s) 387
Bst4CI ACNGT 1 cut(s) 554
Bst6I CTCTTC 1 cut(s) 606
BstBAI YACGTR 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 161
BstF5I GGATG 3 cut(s) 53, 226, 613
BstKTI GATC 3 cut(s) 193, 250, 268
BstMAI GTCTC 1 cut(s) 351
BstMBI GATC 3 cut(s) 190, 247, 265
BstMWI GCNNNNNNNGC 1 cut(s) 427
BstV2I GAAGAC 1 cut(s) 543
BstX2I RGATCY 2 cut(s) 247, 265
BstYI RGATCY 2 cut(s) 247, 265
BsuRI GGCC 2 cut(s) 27, 308
BtsCI GGATG 3 cut(s) 53, 226, 613
Cac8I GCNNGC 1 cut(s) 161
CviAII CATG 1 cut(s) 425
CviJI RGCY 7 cut(s) 27, 118, 152, 308, 370, 394, 430
CviKI_1 RGCY 7 cut(s) 27, 118, 152, 308, 370, 394, 430
DpnI GATC 3 cut(s) 192, 249, 267
DpnII GATC 3 cut(s) 190, 247, 265
Eam1104I CTCTTC 1 cut(s) 606
EarI CTCTTC 1 cut(s) 606
EciI GGCGGA 1 cut(s) 408
Eco31I GGTCTC 1 cut(s) 351
Eco88I CYCGRG 2 cut(s) 441, 487
FaeI CATG 1 cut(s) 428
FaiI YATR 7 cut(s) 14, 84, 133, 135, 144, 336, 426
FatI CATG 1 cut(s) 424
FauNDI CATATG 1 cut(s) 133
FokI GGATG 3 cut(s) 60, 233, 620
FspBI CTAG 3 cut(s) 270, 363, 567
HaeIII GGCC 2 cut(s) 27, 308
Hin1II CATG 1 cut(s) 428
HinfI GANTC 4 cut(s) 79, 215, 490, 527
Hpy166II GTNNAC 1 cut(s) 410
Hpy188I TCNGA 2 cut(s) 220, 523
Hpy188III TCNNGA 2 cut(s) 45, 389
Hpy8I GTNNAC 1 cut(s) 410
HpyAV CCTTC 2 cut(s) 381, 505
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 1 cut(s) 427
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 1 cut(s) 428
Kzo9I GATC 3 cut(s) 190, 247, 265
LmnI GCTCC 1 cut(s) 63
LweI GCATC 1 cut(s) 50
MaeI CTAG 3 cut(s) 270, 363, 567
MaeII ACGT 1 cut(s) 16
MalI GATC 3 cut(s) 192, 249, 267
MboI GATC 3 cut(s) 190, 247, 265
MfeI CAATTG 1 cut(s) 195
MflI RGATCY 2 cut(s) 247, 265
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 5 cut(s) 58, 145, 195, 210, 504
MlyI GAGTC 2 cut(s) 209, 499
MmeI TCCRAC 1 cut(s) 334
MseI TTAA 3 cut(s) 155, 171, 474
MslI CAYNNNNRTG 1 cut(s) 46
MunI CAATTG 1 cut(s) 195
MwoI GCNNNNNNNGC 1 cut(s) 427
NdeI CATATG 1 cut(s) 133
NdeII GATC 3 cut(s) 190, 247, 265
NlaIII CATG 1 cut(s) 428
PaeR7I CTCGAG 2 cut(s) 441, 487
PfeI GAWTC 2 cut(s) 79, 527
PleI GAGTC 2 cut(s) 209, 498
PpsI GAGTC 2 cut(s) 209, 498
Ppu21I YACGTR 1 cut(s) 17
PshBI ATTAAT 1 cut(s) 474
PspXI VCTCGAGB 2 cut(s) 441, 487
PsuI RGATCY 2 cut(s) 247, 265
RseI CAYNNNNRTG 1 cut(s) 46
SaqAI TTAA 3 cut(s) 155, 171, 474
Sau3AI GATC 3 cut(s) 190, 247, 265
SchI GAGTC 2 cut(s) 209, 499
SduI GDGCHC 1 cut(s) 68
SetI ASST 6 cut(s) 19, 188, 442, 458, 488, 599
SfaNI GCATC 1 cut(s) 50
Sfr274I CTCGAG 2 cut(s) 441, 487
SlaI CTCGAG 2 cut(s) 441, 487
SmiMI CAYNNNNRTG 1 cut(s) 46
SmlI CTYRAG 2 cut(s) 441, 487
SmoI CTYRAG 2 cut(s) 441, 487
Sse9I AATT 5 cut(s) 58, 145, 195, 210, 504
SsiI CCGC 2 cut(s) 302, 419
SspMI CTAG 3 cut(s) 270, 363, 567
TaaI ACNGT 1 cut(s) 554
TaiI ACGT 1 cut(s) 19
TaqI TCGA 3 cut(s) 442, 488, 493
TasI AATT 5 cut(s) 58, 145, 195, 210, 504
TfiI GAWTC 2 cut(s) 79, 527
Tru1I TTAA 3 cut(s) 155, 171, 474
Tru9I TTAA 3 cut(s) 155, 171, 474
TspDTI ATGAA 5 cut(s) 71, 240, 351, 594, 624
TspGWI ACGGA 1 cut(s) 251
VspI ATTAAT 1 cut(s) 474
XapI RAATTY 1 cut(s) 504
XhoI CTCGAG 2 cut(s) 441, 487
XspI CTAG 3 cut(s) 270, 363, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.