Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002052

Physical Location & Seq

Genomic Coordinates Reverse (-)

8973076 .. 8974357

Gene Structure 1282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g05900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGCACTATTATGTCGGATGGATGAATGGAGATTTGTTGTATGGCTATTTGGATGACGTTATTCAAGAAATTGGGGAGGAGAATGTGGTTCAAGTTATATCTAACAATGCTTCAAACTACAAGAATGCCGGGGCAAAACTTATGGAGAGGAAAGAGAAGGTGTGGTGGACTCCATGTGCGGCTCATTGCATTGATTTGATGCTAGAAGATATTTCTAAGATGGCATGGTTTGATGACACACTCAAACGTGCTAGGTGTATTTCAAAGTATCTATATGGGCATCAATGGGTACTAGCTTTGATGAGAAAGTACACTAACAATTCGGAAATTCTTCGTCCGGCGGTCACTAGGTTTGCCACTTCTTTCCTTACACTACAAAGCTTACAAAAGCAAAAGGAAAATCTTGTTGCTTTGTTTACCTCTCAAGAATGGTCGGAAAGTACCTATGAAAAATCCCGTGAAGCAAAGTTGGCTAAGCATCATGTGTTATATGATCGTGAGTTTTGGGGTCGAGTTTCCTTTTGCATTAAGGGCGTTCTTCCTCTTGTTTGTGTTTTGAGAGAGGTTGATTCGGAGGAGAGACCCCCCATGGGTTTTATATATGAGTTGATGGATGCTGCAAAAGAGAAAATTGCAAGCAATCTTAACAAAGTGGAGAAAAAATATATGCCTATTTGGAGAAAGATAGATCGTAGATGGGACGATCAACTTCATCAACCACTACATGCAGCGGGCTATTACTTAAACCCACAATTTCGATATGAGGATAATTTCTCAGATACTGATGAAGTGCGAAATAGGTTGTTTGCTTGCATGGATAGGATGCTTGGGAAAGGGAAAGAACGTGAAGAGGCAAATGTTCAATTGGATTTATTTACTAATAAGCGTGGTCCATTTGCGGATTCTATGGCTATGCAAACTAGGAAAAAGCGAACACCAACGGCTTGGTGGGAGCGCTTTGGGCATAAAACACCCGAGTTAACGAAATTTGCTATCCGAGTTCTAAGCCTTACTTGTAGTGCATCGGGATGTGAGAGGAATTGGAGCACATTTTCAATGGTAAGTAAATATATTATTAGTATCTTAAGTGTCATTTTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

368

Amino Acids

43.05

Weight (kDa)

8.83

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36095 AT5G33406
fragaria_vesca	FvH4_2g19761 FvH4_2g31910 FvH4_3g32805 FvH4_3g33921 FvH4_3g33922 FvH4_4g11993 FvH4_5g36511 FvH4_6g16931 FvH4_6g16931
malus_domestica	MD01G1106300.v1.1 MD01G1106700.v1.1 MD08G1077600.v1.1
pyrus_communis	pycom01g13300 pycom06g05900 pycom12g14200 pycom13g27730 pycom16g16790
rosa_chinensis	RchiOBHm_Chr1g0361961 RchiOBHm_Chr1g0361981 RchiOBHm_Chr2g0141951 RchiOBHm_Chr7g0218361
rosa_multiflora	Rmu_co8147950.1_g000001 Rmu_co8356159.1_g000001 Rmu_sc0000117.1_g000022 Rmu_sc0007718.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097000 Rroxscaffold_2G00126330 Rroxscaffold_4G00304630 Rroxscaffold_5G00366570 Rroxscaffold_5G00366580
rosa_rugosa	Rorug03G0268800 Rorug03G0268900 Rorug05G0477700 Rorug05G0477800 RorugPtG0003500.1
rosa_samantha	Rh1AG259100 Rh4AG027200 Rh7CG313700
rosa_wichuraiana	Rw0G004680 Rw1G026970 Rw4G019360 Rw6G028600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	179, 341, 731, 899
AcsI	RAATTY	2 cut(s)	327, 986
AfaI	GTAC	3 cut(s)	291, 311, 442
AfeI	AGCGCT	1 cut(s)	956
AfiI	CCNNNNNNNGG	1 cut(s)	590
AflII	CTTAAG	1 cut(s)	1084
AgsI	TTSAA	6 cut(s)	65, 92, 114, 264, 863, 1056
AluBI	AGCT	2 cut(s)	296, 381
AluI	AGCT	2 cut(s)	296, 381
Alw21I	GWGCWC	1 cut(s)	1049
Alw26I	GTCTC	1 cut(s)	574
AlwNI	CAGNNNCTG	1 cut(s)	782
Ama87I	CYCGRG	1 cut(s)	974
Aor51HI	AGCGCT	1 cut(s)	956
ApeKI	GCWGC	2 cut(s)	617, 728
ApoI	RAATTY	2 cut(s)	327, 986
Asp700I	GAANNNNTTC	1 cut(s)	330
AspLEI	GCGC	1 cut(s)	957
AspS9I	GGNCC	1 cut(s)	890
AsuC2I	CCSGG	1 cut(s)	130
AvaI	CYCGRG	1 cut(s)	974
AvaII	GGWCC	1 cut(s)	890
Bbv12I	GWGCWC	1 cut(s)	1049
BbvI	GCAGC	2 cut(s)	604, 740
BccI	CCATC	4 cut(s)	12, 214, 604, 690
BceAI	ACGGC	1 cut(s)	957
BcnI	CCSGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	574
BfaI	CTAG	5 cut(s)	203, 252, 293, 348, 921
BfoI	RGCGCY	1 cut(s)	958
BfrI	CTTAAG	1 cut(s)	1084
BisI	GCNGC	3 cut(s)	180, 618, 729
BlpI	GCTNAGC	1 cut(s)	474
BlsI	GCNGC	3 cut(s)	181, 619, 730
Bme1390I	CCNGG	1 cut(s)	130
Bme18I	GGWCC	1 cut(s)	890
BmeT110I	CYCGRG	1 cut(s)	974
BmgT120I	GGNCC	1 cut(s)	890
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	6 cut(s)	189, 289, 487, 604, 813, 1031
Bpu1102I	GCTNAGC	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	130
BsaI	GGTCTC	1 cut(s)	574
BsaJI	CCNNGG	2 cut(s)	129, 588
Bsc4I	CCNNNNNNNGG	1 cut(s)	590
Bse3DI	GCAATG	1 cut(s)	184
BseDI	CCNNGG	2 cut(s)	129, 588
BseGI	GGATG	6 cut(s)	23, 27, 58, 619, 828, 1034
BseLI	CCNNNNNNNGG	1 cut(s)	590
BseMI	GCAATG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	789
BseRI	GAGGAG	2 cut(s)	92, 590
BseXI	GCAGC	2 cut(s)	604, 740
BsiHKAI	GWGCWC	1 cut(s)	1049
BsiHKCI	CYCGRG	1 cut(s)	974
BsiSI	CCGG	2 cut(s)	129, 338
BslFI	GGGAC	1 cut(s)	713
BslI	CCNNNNNNNGG	1 cut(s)	590
BsmAI	GTCTC	1 cut(s)	574
BsmFI	GGGAC	1 cut(s)	713
BsmI	GAATGC	1 cut(s)	130
Bso31I	GGTCTC	1 cut(s)	574
BsoBI	CYCGRG	1 cut(s)	974
Bsp1286I	GDGCHC	1 cut(s)	1049
Bsp143I	GATC	3 cut(s)	493, 688, 703
Bsp1720I	GCTNAGC	1 cut(s)	474
Bsp19I	CCATGG	1 cut(s)	588
BspACI	CCGC	4 cut(s)	179, 341, 731, 899
BspCNI	CTCAG	1 cut(s)	788
BspTI	CTTAAG	1 cut(s)	1084
BspTNI	GGTCTC	1 cut(s)	574
BsrDI	GCAATG	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	129, 588
BssMI	GATC	3 cut(s)	493, 688, 703
BssT1I	CCWWGG	1 cut(s)	588
Bst6I	CTCTTC	1 cut(s)	843
BstAFI	CTTAAG	1 cut(s)	1084
BstC8I	GCNNGC	3 cut(s)	637, 733, 811
BstDEI	CTNAG	4 cut(s)	216, 474, 775, 1004
BstDSI	CCRYGG	1 cut(s)	588
BstF5I	GGATG	6 cut(s)	23, 27, 58, 619, 828, 1034
BstH2I	RGCGCY	1 cut(s)	958
BstHHI	GCGC	1 cut(s)	957
BstKTI	GATC	3 cut(s)	496, 691, 706
BstMAI	GTCTC	1 cut(s)	574
BstMBI	GATC	3 cut(s)	493, 688, 703
BstMWI	GCNNNNNNNGC	3 cut(s)	470, 531, 961
BstNSI	RCATGY	1 cut(s)	728
BstSCI	CCNGG	1 cut(s)	128
BstV1I	GCAGC	2 cut(s)	604, 740
BstXI	CCANNNNNNTGG	1 cut(s)	945
BtgI	CCRYGG	1 cut(s)	588
BtsCI	GGATG	6 cut(s)	23, 27, 58, 619, 828, 1034
Cac8I	GCNNGC	3 cut(s)	637, 733, 811
CaiI	CAGNNNCTG	1 cut(s)	782
CfoI	GCGC	1 cut(s)	957
Cfr13I	GGNCC	1 cut(s)	890
Csp6I	GTAC	3 cut(s)	290, 310, 441
CviAII	CATG	6 cut(s)	174, 225, 482, 589, 725, 814
CviJI	RGCY	9 cut(s)	45, 182, 296, 381, 473, 735, 911, 944, 1008
CviKI_1	RGCY	9 cut(s)	45, 182, 296, 381, 473, 735, 911, 944, 1008
CviQI	GTAC	3 cut(s)	290, 310, 441
DdeI	CTNAG	4 cut(s)	216, 474, 775, 1004
DpnI	GATC	3 cut(s)	495, 690, 705
DpnII	GATC	3 cut(s)	493, 688, 703
Eam1104I	CTCTTC	1 cut(s)	843
EarI	CTCTTC	1 cut(s)	843
Eco130I	CCWWGG	1 cut(s)	588
Eco31I	GGTCTC	1 cut(s)	574
Eco47I	GGWCC	1 cut(s)	890
Eco47III	AGCGCT	1 cut(s)	956
Eco88I	CYCGRG	1 cut(s)	974
EcoT14I	CCWWGG	1 cut(s)	588
ErhI	CCWWGG	1 cut(s)	588
FaeI	CATG	6 cut(s)	177, 228, 485, 592, 728, 817
FalI	AAGNNNNNCTT	2 cut(s)	997, 1029
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	6 cut(s)	173, 224, 481, 588, 724, 813
FauI	CCCGC	1 cut(s)	724
Fnu4HI	GCNGC	3 cut(s)	180, 618, 729
FokI	GGATG	6 cut(s)	30, 34, 65, 626, 835, 1041
Fsp4HI	GCNGC	3 cut(s)	180, 618, 729
FspBI	CTAG	5 cut(s)	203, 252, 293, 348, 921
GlaI	GCGC	1 cut(s)	956
GluI	GCNGC	3 cut(s)	180, 618, 729
HaeII	RGCGCY	1 cut(s)	958
HapII	CCGG	2 cut(s)	129, 338
HhaI	GCGC	1 cut(s)	957
Hin1II	CATG	6 cut(s)	177, 228, 485, 592, 728, 817
Hin6I	GCGC	1 cut(s)	955
HinP1I	GCGC	1 cut(s)	955
HincII	GTYRAC	1 cut(s)	981
HindII	GTYRAC	1 cut(s)	981
HindIII	AAGCTT	1 cut(s)	379
HinfI	GANTC	3 cut(s)	169, 569, 902
HpaI	GTTAAC	1 cut(s)	981
HpaII	CCGG	2 cut(s)	129, 338
Hpy166II	GTNNAC	4 cut(s)	168, 312, 417, 981
Hpy188I	TCNGA	6 cut(s)	17, 325, 436, 574, 778, 998
Hpy188III	TCNNGA	4 cut(s)	65, 425, 497, 1026
Hpy8I	GTNNAC	4 cut(s)	168, 312, 417, 981
HpyAV	CCTTC	1 cut(s)	151
HpyCH4IV	ACGT	3 cut(s)	57, 247, 844
HpyCH4V	TGCA	9 cut(s)	4, 189, 525, 620, 635, 728, 813, 916, 1022
HpyF10VI	GCNNNNNNNGC	3 cut(s)	470, 531, 961
HpyF3I	CTNAG	4 cut(s)	216, 474, 775, 1004
HpySE526I	ACGT	3 cut(s)	57, 247, 844
Hsp92II	CATG	6 cut(s)	177, 228, 485, 592, 728, 817
HspAI	GCGC	1 cut(s)	955
KspAI	GTTAAC	1 cut(s)	981
Kzo9I	GATC	3 cut(s)	493, 688, 703
LmnI	GCTCC	2 cut(s)	952, 1044
LpnPI	CCDG	2 cut(s)	142, 351
Lsp1109I	GCAGC	2 cut(s)	604, 740
LweI	GCATC	6 cut(s)	189, 289, 487, 604, 813, 1031
MaeI	CTAG	5 cut(s)	203, 252, 293, 348, 921
MaeII	ACGT	3 cut(s)	57, 247, 844
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	3 cut(s)	495, 690, 705
MboI	GATC	3 cut(s)	493, 688, 703
MboII	GAAGA	4 cut(s)	218, 323, 530, 860
MfeI	CAATTG	1 cut(s)	863
MhlI	GDGCHC	1 cut(s)	1049
MluCI	AATT	9 cut(s)	69, 319, 327, 630, 752, 769, 863, 986, 1039
MlyI	GAGTC	1 cut(s)	163
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	9 cut(s)	70, 141, 430, 552, 556, 568, 757, 844, 1029
MroXI	GAANNNNTTC	1 cut(s)	330
MseI	TTAA	6 cut(s)	528, 645, 743, 980, 1085, 1102
MslI	CAYNNNNRTG	2 cut(s)	9, 1027
MspA1I	CMGCKG	1 cut(s)	731
MspCI	CTTAAG	1 cut(s)	1084
MspI	CCGG	2 cut(s)	129, 338
MspR9I	CCNGG	1 cut(s)	130
MunI	CAATTG	1 cut(s)	863
Mva1269I	GAATGC	1 cut(s)	130
MwoI	GCNNNNNNNGC	3 cut(s)	470, 531, 961
NciI	CCSGG	1 cut(s)	130
NcoI	CCATGG	1 cut(s)	588
NdeII	GATC	3 cut(s)	493, 688, 703
NlaIII	CATG	6 cut(s)	177, 228, 485, 592, 728, 817
NmuCI	GTSAC	1 cut(s)	343
NspI	RCATGY	1 cut(s)	728
PctI	GAATGC	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	569, 902
PkrI	GCNGC	3 cut(s)	181, 619, 730
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	890
PstNI	CAGNNNCTG	1 cut(s)	782
RsaI	GTAC	3 cut(s)	291, 311, 442
RsaNI	GTAC	3 cut(s)	290, 310, 441
RseI	CAYNNNNRTG	2 cut(s)	9, 1027
SaqAI	TTAA	6 cut(s)	528, 645, 743, 980, 1085, 1102
SatI	GCNGC	3 cut(s)	180, 618, 729
Sau3AI	GATC	3 cut(s)	493, 688, 703
Sau96I	GGNCC	1 cut(s)	890
SchI	GAGTC	1 cut(s)	163
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	1049
SfaNI	GCATC	6 cut(s)	189, 289, 487, 604, 813, 1031
SinI	GGWCC	1 cut(s)	890
SmiMI	CAYNNNNRTG	2 cut(s)	9, 1027
SmlI	CTYRAG	2 cut(s)	423, 1084
SmoI	CTYRAG	2 cut(s)	423, 1084
Sse9I	AATT	9 cut(s)	69, 319, 327, 630, 752, 769, 863, 986, 1039
SsiI	CCGC	4 cut(s)	179, 341, 731, 899
SspMI	CTAG	5 cut(s)	203, 252, 293, 348, 921
StyD4I	CCNGG	1 cut(s)	128
StyI	CCWWGG	1 cut(s)	588
TaiI	ACGT	3 cut(s)	60, 250, 847
TaqI	TCGA	2 cut(s)	511, 757
TasI	AATT	9 cut(s)	69, 319, 327, 630, 752, 769, 863, 986, 1039
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	1 cut(s)	182
TfiI	GAWTC	2 cut(s)	569, 902
Tru1I	TTAA	6 cut(s)	528, 645, 743, 980, 1085, 1102
Tru9I	TTAA	6 cut(s)	528, 645, 743, 980, 1085, 1102
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	2 cut(s)	617, 728
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	4 cut(s)	38, 462, 701, 801
Vha464I	CTTAAG	1 cut(s)	1084
VpaK11BI	GGWCC	1 cut(s)	890
XapI	RAATTY	2 cut(s)	327, 986
XceI	RCATGY	1 cut(s)	728
XcmI	CCANNNNNNNNNTGG	1 cut(s)	945
XmnI	GAANNNNTTC	1 cut(s)	330
XspI	CTAG	5 cut(s)	203, 252, 293, 348, 921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.