RchiOBHm_Chr2g0141951

Protein of unknown function (DUF 659)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
59502979 .. 59507965
4987 bp
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UTR
Exon/CDS
Intron
PRQ51218

Sequence Viewer

Length: 3111 bp
ATGCCTCCCCGAGTCTTCACTCTCAATCCCAATCCCAATCCCAATCCCTTACTTGAAAAGTTGATAAAATCTCAAAGAGCCCATAAGTTTTCTCAAGAATTTGGTTGTAAAGGAGCTATTTGCAGAAGTGGAGCAAGATTTGAAGAGAGTTGGAGAGTTGCAGTTCGATACTTCGATTTGAAGAAAAGGAGTTCAAGGTATGATCATGGTCCGATCAGTTTTCCTTGTTTTCTTTGGATGGTTTTGTTTTTCTTTGTTATGTGCAATTGGAATTGGAATTTTGACATCGATCTATCATCTATGTGCAATTGCAAAATGAGTTCTAGTACTAGCGGGACAACAAAGAAAGACCATGCTTGGCGATGGACTAAACCAATTCCCGGGGAGTTGAAGTACTTTTTGTGTGCATTTTGTGATCAAAGAAATACCGGTGGCATATTCAGGTTCAAGCAACATTTAGTTGGCACTCATAAAGGAATCAAACCTTGTAACAAAGTTCCACCAAATGTGAAAGATTGGTGCACTAAAGCACTTCAAAGAAATGAAGAAGAGAAACAAACAAGGATTGCGGTGCGTCGGGAGATAGGGGGATTGGAAAGTCTAGAAGGAGATGCACATTATCAAGAGGTGACAAATGTTGCTGCAAGTGAGAGTGGTAGTGCTCAAACTCCACTTGGTGGTGGTTCTACGGGTCAACCGAAGGCTAGAGGACCGATGGACAAGTTTGTATCCTCAAAAGCTCGTCAAGTTACATTAAATACTTCATACAAGAAAGAAGAAAGACATGATGTGTGTAGAGCAATTGGGCGTTTGTTTTATACTAGTGCATTGGCTTTCAATGTGGCAAATAATCCTTATTATTTTGCGGCATTGGAGATGGTTGCCAAATACGGTCCCGGTTTTCAACCTCCAACAAGTCATGAGTTAAGGACTTGGATTTTGAGGGAAGAAGTTGAAGATGTTCAAAAGTTAATGGAAGCACACAAAAAAGATTGGAGCCACTATGGATGCACTATTATGTCGGATGGTTGGACGGATGGCAAGAGTAGGGTTATACTAAATTTTTTAGTAAATAGCCCTAAAGGTACATGGTTCTTGAAATCGGTTGATGCATCGGATACAATTAAAAATGGAGAGTTGATGCTAAATTACTTGGATAGTATTGTGGAGGAGGTAGGGGAGGAGAATGTTGTCCAAATAGTTACGGACAATGCTTCCAATTATAAGTGGGCGGGAAAGGAACTAATGAAGCATAGGAGTAAATTGTGGTGGACTCCGTGTGCGGCTCATTGCATTGACTTGATGTTAGAAGATATTAGCAAGATGAAAGTCTTTGAAACCACCATTCAAAAAGCTAAGCAAATTGTGAAATTCATTTATGGGCACACACAAGTTCTTTCCATTATGAGGAAATTCACCGACAACAAGGAGATTATTCGACCGGCGGTTACAAGGTTTGCCACATCTTTTCTCTCTCTTCAAAGTTTATATAAGCAAAAGGAGGCTCTTATTAGTATGTTTTCATCAAAAGATTGGTATGAATGTGGATGTACAAAACATAAGGATGCTTATGAGGTGAGGAAGTGGATCCTTCGTGACACAAGTTTTTGGAACCATGTTGCTTATTGCATAAAGAGTGTCTTGCCCCTTGTTTGTGTCTTAAGAGAGGTTGATTCGGAAGTAAGACCCGCCATGGGATTTATCTATGAGTTGATGGATGCCGCAAAAGAAAAGATTGCAAGTAATCTTGGAAATGTAGAAGCAAAGTATGGAGCGATTTGGAGGAGAATAGATAATAGATGGAGTCCACAACTTCATCAACCATTGCATGCGGCGGGTTATTACTTGAACCCTCAATTCCGATATGAAGACAACTTTAAAAATACCGAGCATGTGAAGAAGGGTTTGGAAGAGTGCATGGATAGGATGCTAGTTGGTGAGGCTCGTGTCGCAGCGGAAATACAATTAGACTTATATGAGCGAAAGCTTGGTAAGTTTGGAAGTGCGATGGCCGAATCTACTAGAAAAATCCGATCACCCGTGTTTTGGTGGGAAAAATATGGGACACAAACACCGGAGTTGATGAATTTTGCTACTCGGGTCCTTTCCCTTACTTGTAGTGCATCGGGGTGTGAGAGGAATTGGAGTACTTTTGAAATGATTCATACCAAAAAGAGGAATAGACTTGAGCACAAGAGATTGCATGCTTTAGTCTATGTGAAATATAATATTGCTCTACGAGATAGGAATTTGAAAAGGAATGCTACAATGACCGATCCTATTGTAGTGGAAGAAATTGAATCTGATGATGAATGGATAACAGAGATAGAGGATCCGGTTCTTCCCCCGAATCCACATTGGCTTGAGGACAATGTAGAAGATCTAACATTAAATGATGAGGCGGTAAGAAATGTGCCAATTGGTACATATAAAAGTACCCTAATTGATAGAGAGCCTCCTCCTCGTGTGCATTCTCCTCCTCGTGAGCCTACTCCTCCCCGTGAGCCTACTCCTTCTCTTGATGAGCCTATTGTTTTATACAAAAGGAAATCTAGTGAAGGAGCATGTTCAAGTAAAAGAAAAACTCCAAGAAAATCAATGCGTCTTGATGACATTGTGGATGATGGTATTAGAATTAATCCATTTGATGACACCAATCCTCTCTTCGAGCACCATGGTGATGATAGTGATGGAGGTGATAGTGATGGTGGTGATAGTTTGGGTGAAGATAGTTTGGATGCTAGAAGCACCCTTGCTTCTTCTCCTCTGGCTGCGGATGCTCAAGCTATTTCTCTTGGGCTCGAGCTAGCTATCTCTCTCTCCCTTTCTTCTTTTCAGCTTGAATCAGACTCCCTTGTGCTGATTTCGGCCCTTTTGAACCCACTTTCGACGGTGGACTGGACTGCTTCGAACATCATAGCACATATTCGTGTTCAAGGTGGTCTTTTCCATCGTGTTAACTGGCTCTGGTCCAGTAGATCAGCCAATGCGGCAGCAGACCTGGTTGCGTCGCTGGCTAAGCGCAGGGTGTGCCCGGATGATTGGCCATCCAATCCTCCTCCCTCCCTAATGCGAATCCTTCTTTTTGATGCTGTAACAGATCCCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1036

Amino Acids

117.93

Weight (kDa)

8.15

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 304 - 455 2.3e-63 Domain of unknown function (DUF659)
Dimer_Tnp_hAT PF05699 678 - 744 3.7e-12 hAT family C-terminal dimerisation region
RVT_3 PF13456 920 - 1005 7.2e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1224
AccB7I CCANNNNNTGG 1 cut(s) 677
AclWI GGATC 6 cut(s) 1582, 1595, 2270, 2327, 2340, 3095
AcoI YGGCCR 2 cut(s) 2010, 3044
AcsI RAATTY 7 cut(s) 98, 277, 1060, 1370, 1412, 2086, 2248
AdeI CACNNNGTG 1 cut(s) 677
AfaI GTAC 7 cut(s) 328, 395, 1087, 1552, 2149, 2425, 2437
AfiI CCNNNNNNNGG 6 cut(s) 380, 677, 1407, 1694, 2046, 2175
AflII CTTAAG 1 cut(s) 1660
AgeI ACCGGT 1 cut(s) 428
AhlI ACTAGT 1 cut(s) 821
AjnI CCWGG 1 cut(s) 3000
AjuI GAANNNNNNNTTGG 4 cut(s) 1889, 1921, 2648, 2680
AleI CACNNNNGTG 1 cut(s) 2676
AluBI AGCT 8 cut(s) 116, 740, 1355, 1987, 2786, 2806, 2810, 2839
AluI AGCT 8 cut(s) 116, 740, 1355, 1987, 2786, 2806, 2810, 2839
Alw21I GWGCWC 4 cut(s) 524, 664, 2193, 2673
Alw44I GTGCAC 1 cut(s) 520
AlwI GGATC 6 cut(s) 1582, 1595, 2270, 2327, 2340, 3095
Ama87I CYCGRG 4 cut(s) 9, 380, 2097, 2801
AoxI GGCC 3 cut(s) 2010, 2868, 3044
ApaLI GTGCAC 1 cut(s) 520
ApeKI GCWGC 4 cut(s) 641, 1952, 2771, 2993
ApoI RAATTY 7 cut(s) 98, 277, 1060, 1370, 1412, 2086, 2248
ArsI GACNNNNNNTTYG 2 cut(s) 922, 954
AseI ATTAAT 1 cut(s) 2637
AsiGI ACCGGT 1 cut(s) 428
Asp700I GAANNNNTTC 2 cut(s) 960, 2160
AspLEI GCGC 1 cut(s) 3024
AspS9I GGNCC 6 cut(s) 209, 710, 893, 2101, 2869, 2970
AsuC2I CCSGG 4 cut(s) 381, 382, 897, 3035
AsuHPI GGTGA 9 cut(s) 640, 1408, 1588, 1949, 2028, 2690, 2708, 2723, 2735
AsuII TTCGAA 1 cut(s) 2909
AsuNHI GCTAGC 1 cut(s) 2806
AvaI CYCGRG 4 cut(s) 9, 380, 2097, 2801
AvaII GGWCC 5 cut(s) 209, 710, 893, 2101, 2970
BaeGI GKGCMC 3 cut(s) 524, 1386, 3035
BalI TGGCCA 1 cut(s) 3046
BamHI GGATCC 2 cut(s) 1587, 2332
BanII GRGCYC 2 cut(s) 82, 2802
BauI CACGAG 3 cut(s) 1944, 2463, 2481
BbsI GAAGAC 2 cut(s) 7, 1875
Bbv12I GWGCWC 4 cut(s) 524, 664, 2193, 2673
BbvI GCAGC 4 cut(s) 628, 1964, 2758, 3005
BciT130I CCWGG 1 cut(s) 3002
BciVI GTATCC 2 cut(s) 739, 1111
BclI TGATCA 2 cut(s) 202, 415
BcnI CCSGG 4 cut(s) 381, 382, 897, 3035
BcuI ACTAGT 1 cut(s) 821
BfrI CTTAAG 1 cut(s) 1660
BfuI GTATCC 2 cut(s) 739, 1111
BglI GCCNNNNNGGC 1 cut(s) 2990
BglII AGATCT 1 cut(s) 2380
BisI GCNGC 9 cut(s) 642, 867, 1284, 1722, 1833, 1953, 2772, 2991, 2994
BlpI GCTNAGC 2 cut(s) 1356, 3018
BlsI GCNGC 9 cut(s) 643, 868, 1285, 1723, 1834, 1954, 2773, 2992, 2995
BmcAI AGTACT 3 cut(s) 328, 395, 2149
Bme1390I CCNGG 5 cut(s) 381, 382, 897, 3002, 3035
Bme18I GGWCC 5 cut(s) 209, 710, 893, 2101, 2970
BmeT110I CYCGRG 4 cut(s) 9, 380, 2097, 2801
BmgT120I GGNCC 6 cut(s) 209, 710, 893, 2101, 2869, 2970
BmiI GGNNCC 6 cut(s) 895, 998, 1589, 1613, 2102, 2334
BmrFI CCNGG 5 cut(s) 381, 382, 897, 3002, 3035
BmtI GCTAGC 1 cut(s) 2810
BpiI GAAGAC 2 cut(s) 7, 1875
Bpu1102I GCTNAGC 2 cut(s) 1356, 3018
Bpu14I TTCGAA 1 cut(s) 2909
BpuEI CTTGAG 4 cut(s) 78, 2207, 2384, 2766
BpuMI CCSGG 4 cut(s) 381, 382, 897, 3035
Bsa29I ATCGAT 1 cut(s) 288
BsaJI CCNNGG 4 cut(s) 380, 381, 1692, 2674
BsaWI WCCGGW 3 cut(s) 428, 2074, 2335
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 6 cut(s) 380, 677, 1407, 1694, 2046, 2175
Bse118I RCCGGY 2 cut(s) 428, 1441
Bse1I ACTGG 3 cut(s) 2903, 2966, 2973
Bse3DI GCAATG 2 cut(s) 1288, 1823
BseBI CCWGG 1 cut(s) 3002
BseCI ATCGAT 1 cut(s) 288
BseDI CCNNGG 4 cut(s) 380, 381, 1692, 2674
BseLI CCNNNNNNNGG 6 cut(s) 380, 677, 1407, 1694, 2046, 2175
BseMI GCAATG 2 cut(s) 1288, 1823
BseNI ACTGG 3 cut(s) 2903, 2966, 2973
BseSI GKGCMC 3 cut(s) 524, 1386, 3035
BseXI GCAGC 4 cut(s) 628, 1964, 2758, 3005
Bsh1285I CGRYCG 1 cut(s) 1442
BshFI GGCC 3 cut(s) 2012, 2870, 3046
BshTI ACCGGT 1 cut(s) 428
BshVI ATCGAT 1 cut(s) 288
BsiEI CGRYCG 1 cut(s) 1442
BsiHKAI GWGCWC 4 cut(s) 524, 664, 2193, 2673
BsiHKCI CYCGRG 4 cut(s) 9, 380, 2097, 2801
BsiSI CCGG 7 cut(s) 381, 429, 897, 1442, 2075, 2336, 3035
BslFI GGGAC 3 cut(s) 349, 879, 2077
BslI CCNNNNNNNGG 6 cut(s) 380, 677, 1407, 1694, 2046, 2175
BsmFI GGGAC 3 cut(s) 349, 879, 2077
BsmI GAATGC 2 cut(s) 2266, 2470
BsnI GGCC 3 cut(s) 2012, 2870, 3046
BsoBI CYCGRG 4 cut(s) 9, 380, 2097, 2801
Bsp119I TTCGAA 1 cut(s) 2909
Bsp1286I GDGCHC 8 cut(s) 82, 524, 664, 1386, 2193, 2673, 2802, 3035
Bsp1407I TGTACA 1 cut(s) 1550
Bsp1720I GCTNAGC 2 cut(s) 1356, 3018
Bsp19I CCATGG 2 cut(s) 1692, 2674
BspANI GGCC 3 cut(s) 2012, 2870, 3046
BspDI ATCGAT 1 cut(s) 288
BspHI TCATGA 1 cut(s) 919
BspLI GGNNCC 6 cut(s) 895, 998, 1589, 1613, 2102, 2334
BspOI GCTAGC 1 cut(s) 2810
BspPI GGATC 6 cut(s) 1582, 1595, 2270, 2327, 2340, 3095
BspT104I TTCGAA 1 cut(s) 2909
BspTI CTTAAG 1 cut(s) 1660
BsrDI GCAATG 2 cut(s) 1288, 1823
BsrFI RCCGGY 2 cut(s) 428, 1441
BsrGI TGTACA 1 cut(s) 1550
BsrI ACTGG 3 cut(s) 2903, 2966, 2973
BssAI RCCGGY 2 cut(s) 428, 1441
BssECI CCNNGG 4 cut(s) 380, 381, 1692, 2674
BssSI CACGAG 3 cut(s) 1944, 2463, 2481
BssT1I CCWWGG 2 cut(s) 1692, 2674
Bst2BI CACGAG 3 cut(s) 1944, 2463, 2481
Bst2UI CCWGG 1 cut(s) 3002
Bst4CI ACNGT 2 cut(s) 893, 2893
Bst6I CTCTTC 5 cut(s) 138, 543, 1482, 1905, 2669
BstAFI CTTAAG 1 cut(s) 1660
BstAPI GCANNNNNTGC 1 cut(s) 3030
BstAUI TGTACA 1 cut(s) 1550
BstBI TTCGAA 1 cut(s) 2909
BstC8I GCNNGC 4 cut(s) 1830, 2205, 2808, 3015
BstDEI CTNAG 3 cut(s) 1356, 3018, 3108
BstDSI CCRYGG 2 cut(s) 1692, 2674
BstHHI GCGC 1 cut(s) 3024
BstMCI CGRYCG 1 cut(s) 1442
BstMWI GCNNNNNNNGC 6 cut(s) 1949, 2777, 2990, 3014, 3019, 3030
BstNI CCWGG 1 cut(s) 3002
BstNSI RCATGY 4 cut(s) 1832, 1895, 2207, 2568
BstSCI CCNGG 5 cut(s) 379, 380, 895, 3000, 3033
BstSLI GKGCMC 3 cut(s) 524, 1386, 3035
BstV1I GCAGC 4 cut(s) 628, 1964, 2758, 3005
BstV2I GAAGAC 2 cut(s) 7, 1875
BstX2I RGATCY 4 cut(s) 1587, 2332, 2380, 3100
BstYI RGATCY 4 cut(s) 1587, 2332, 2380, 3100
Bsu15I ATCGAT 1 cut(s) 288
BsuI GTATCC 2 cut(s) 739, 1111
BsuRI GGCC 3 cut(s) 2012, 2870, 3046
BsuTUI ATCGAT 1 cut(s) 288
BtgI CCRYGG 2 cut(s) 1692, 2674
BtgZI GCGATG 2 cut(s) 376, 2021
Cac8I GCNNGC 4 cut(s) 1830, 2205, 2808, 3015
CciI TCATGA 1 cut(s) 919
CfoI GCGC 1 cut(s) 3024
Cfr10I RCCGGY 2 cut(s) 428, 1441
Cfr13I GGNCC 6 cut(s) 209, 710, 893, 2101, 2869, 2970
Cfr9I CCCGGG 1 cut(s) 380
ClaI ATCGAT 1 cut(s) 288
CseI GACGC 3 cut(s) 563, 2591, 2997
CsiI ACCWGGT 1 cut(s) 3000
Csp6I GTAC 7 cut(s) 327, 394, 1086, 1551, 2148, 2424, 2436
CspAI ACCGGT 1 cut(s) 428
CviQI GTAC 7 cut(s) 327, 394, 1086, 1551, 2148, 2424, 2436
DdeI CTNAG 3 cut(s) 1356, 3018, 3108
DraI TTTAAA 1 cut(s) 1879
DraIII CACNNNGTG 1 cut(s) 677
EaeI YGGCCR 2 cut(s) 2010, 3044
Eam1104I CTCTTC 5 cut(s) 138, 543, 1482, 1905, 2669
EarI CTCTTC 5 cut(s) 138, 543, 1482, 1905, 2669
Eco130I CCWWGG 2 cut(s) 1692, 2674
Eco24I GRGCYC 2 cut(s) 82, 2802
Eco47I GGWCC 5 cut(s) 209, 710, 893, 2101, 2970
Eco88I CYCGRG 4 cut(s) 9, 380, 2097, 2801
EcoO109I RGGNCCY 1 cut(s) 2101
EcoRII CCWGG 1 cut(s) 3000
EcoT14I CCWWGG 2 cut(s) 1692, 2674
EcoT22I ATGCAT 1 cut(s) 1114
EcoT38I GRGCYC 2 cut(s) 82, 2802
ErhI CCWWGG 2 cut(s) 1692, 2674
FalI AAGNNNNNCTT 4 cut(s) 1625, 1657, 2928, 2960
FaqI GGGAC 3 cut(s) 349, 879, 2077
FauI CCCGC 4 cut(s) 326, 1225, 1696, 1828
FbaI TGATCA 2 cut(s) 202, 415
Fnu4HI GCNGC 9 cut(s) 642, 867, 1284, 1722, 1833, 1953, 2772, 2991, 2994
FriOI GRGCYC 2 cut(s) 82, 2802
Fsp4HI GCNGC 9 cut(s) 642, 867, 1284, 1722, 1833, 1953, 2772, 2991, 2994
GlaI GCGC 1 cut(s) 3023
GluI GCNGC 9 cut(s) 642, 867, 1284, 1722, 1833, 1953, 2772, 2991, 2994
HaeIII GGCC 3 cut(s) 2012, 2870, 3046
HapII CCGG 7 cut(s) 381, 429, 897, 1442, 2075, 2336, 3035
HgaI GACGC 3 cut(s) 563, 2591, 2997
HhaI GCGC 1 cut(s) 3024
Hin6I GCGC 1 cut(s) 3022
HinP1I GCGC 1 cut(s) 3022
HincII GTYRAC 2 cut(s) 695, 2959
HindII GTYRAC 2 cut(s) 695, 2959
HindIII AAGCTT 1 cut(s) 1985
HpaI GTTAAC 1 cut(s) 2959
HpaII CCGG 7 cut(s) 381, 429, 897, 1442, 2075, 2336, 3035
HphI GGTGA 9 cut(s) 640, 1408, 1588, 1949, 2028, 2690, 2708, 2723, 2735
Hpy166II GTNNAC 6 cut(s) 522, 695, 1272, 1808, 2896, 2959
Hpy188I TCNGA 8 cut(s) 213, 1024, 1117, 1678, 1862, 2033, 2305, 2848
Hpy8I GTNNAC 6 cut(s) 522, 695, 1272, 1808, 2896, 2959
Hpy99I CGWCG 3 cut(s) 579, 2893, 3013
HpyAV CCTTC 7 cut(s) 599, 694, 1601, 1894, 2523, 2552, 3089
HpyCH4III ACNGT 2 cut(s) 893, 2893
HpyF10VI GCNNNNNNNGC 6 cut(s) 1949, 2777, 2990, 3014, 3019, 3030
HpyF3I CTNAG 3 cut(s) 1356, 3018, 3108
HspAI GCGC 1 cut(s) 3022
Ksp22I TGATCA 2 cut(s) 202, 415
KspAI GTTAAC 1 cut(s) 2959
LmnI GCTCC 5 cut(s) 113, 131, 996, 1772, 2561
Lsp1109I GCAGC 4 cut(s) 628, 1964, 2758, 3005
MabI ACCWGGT 1 cut(s) 3000
MaeIII GTNAC 7 cut(s) 488, 628, 748, 1201, 1447, 1595, 3094
MfeI CAATTG 4 cut(s) 265, 307, 801, 2418
MflI RGATCY 4 cut(s) 1587, 2332, 2380, 3100
MhlI GDGCHC 8 cut(s) 82, 524, 664, 1386, 2193, 2673, 2802, 3035
MlsI TGGCCA 1 cut(s) 3046
MluNI TGGCCA 1 cut(s) 3046
MlyI GAGTC 4 cut(s) 21, 1267, 1813, 2843
MmeI TCCRAC 4 cut(s) 131, 935, 1002, 1010
Mox20I TGGCCA 1 cut(s) 3046
Mph1103I ATGCAT 1 cut(s) 1114
MroXI GAANNNNTTC 2 cut(s) 960, 2160
MscI TGGCCA 1 cut(s) 3046
MseI TTAA 9 cut(s) 755, 926, 971, 1125, 1661, 1878, 2390, 2637, 2958
MslI CAYNNNNRTG 7 cut(s) 301, 1016, 1563, 2128, 2676, 2679, 2928
Msp20I TGGCCA 1 cut(s) 3046
MspA1I CMGCKG 1 cut(s) 1955
MspCI CTTAAG 1 cut(s) 1660
MspI CCGG 7 cut(s) 381, 429, 897, 1442, 2075, 2336, 3035
MspR9I CCNGG 5 cut(s) 381, 382, 897, 3002, 3035
MunI CAATTG 4 cut(s) 265, 307, 801, 2418
Mva1269I GAATGC 2 cut(s) 2266, 2470
MvaI CCWGG 1 cut(s) 3002
MwoI GCNNNNNNNGC 6 cut(s) 1949, 2777, 2990, 3014, 3019, 3030
NciI CCSGG 4 cut(s) 381, 382, 897, 3035
NcoI CCATGG 2 cut(s) 1692, 2674
NheI GCTAGC 1 cut(s) 2806
NlaIV GGNNCC 6 cut(s) 895, 998, 1589, 1613, 2102, 2334
NmuCI GTSAC 2 cut(s) 628, 1595
NsiI ATGCAT 1 cut(s) 1114
NspI RCATGY 4 cut(s) 1832, 1895, 2207, 2568
NspV TTCGAA 1 cut(s) 2909
OliI CACNNNNGTG 1 cut(s) 2676
PaeI GCATGC 2 cut(s) 1832, 2207
PaeR7I CTCGAG 1 cut(s) 2801
PagI TCATGA 1 cut(s) 919
PcsI WCGNNNNNNNCGW 1 cut(s) 695
PctI GAATGC 2 cut(s) 2266, 2470
PdmI GAANNNNTTC 2 cut(s) 960, 2160
PfeI GAWTC 8 cut(s) 477, 1673, 2015, 2161, 2300, 2350, 2843, 3075
PflMI CCANNNNNTGG 1 cut(s) 677
PinAI ACCGGT 1 cut(s) 428
PkrI GCNGC 9 cut(s) 643, 868, 1285, 1723, 1834, 1954, 2773, 2992, 2995
PleI GAGTC 4 cut(s) 20, 1267, 1812, 2843
PpsI GAGTC 4 cut(s) 20, 1267, 1812, 2843
PpuMI RGGWCCY 1 cut(s) 2101
PshBI ATTAAT 1 cut(s) 2637
PsiI TTATAA 1 cut(s) 1224
Psp5II RGGWCCY 1 cut(s) 2101
Psp6I CCWGG 1 cut(s) 3000
PspGI CCWGG 1 cut(s) 3000
PspN4I GGNNCC 6 cut(s) 895, 998, 1589, 1613, 2102, 2334
PspPI GGNCC 6 cut(s) 209, 710, 893, 2101, 2869, 2970
PspPPI RGGWCCY 1 cut(s) 2101
PspXI VCTCGAGB 1 cut(s) 2801
PsuI RGATCY 4 cut(s) 1587, 2332, 2380, 3100
RsaI GTAC 7 cut(s) 328, 395, 1087, 1552, 2149, 2425, 2437
RsaNI GTAC 7 cut(s) 327, 394, 1086, 1551, 2148, 2424, 2436
RseI CAYNNNNRTG 7 cut(s) 301, 1016, 1563, 2128, 2676, 2679, 2928
SaqAI TTAA 9 cut(s) 755, 926, 971, 1125, 1661, 1878, 2390, 2637, 2958
SatI GCNGC 9 cut(s) 642, 867, 1284, 1722, 1833, 1953, 2772, 2991, 2994
Sau96I GGNCC 6 cut(s) 209, 710, 893, 2101, 2869, 2970
ScaI AGTACT 3 cut(s) 328, 395, 2149
SchI GAGTC 4 cut(s) 21, 1267, 1813, 2843
ScrFI CCNGG 5 cut(s) 381, 382, 897, 3002, 3035
SduI GDGCHC 8 cut(s) 82, 524, 664, 1386, 2193, 2673, 2802, 3035
SexAI ACCWGGT 1 cut(s) 3000
Sfr274I CTCGAG 1 cut(s) 2801
SfuI TTCGAA 1 cut(s) 2909
SinI GGWCC 5 cut(s) 209, 710, 893, 2101, 2970
SlaI CTCGAG 1 cut(s) 2801
SmaI CCCGGG 1 cut(s) 382
SmiMI CAYNNNNRTG 7 cut(s) 301, 1016, 1563, 2128, 2676, 2679, 2928
SmlI CTYRAG 6 cut(s) 93, 1660, 2186, 2363, 2781, 2801
SmoI CTYRAG 6 cut(s) 93, 1660, 2186, 2363, 2781, 2801
SpeI ACTAGT 1 cut(s) 821
SphI GCATGC 2 cut(s) 1832, 2207
SspI AATATT 1 cut(s) 2230
StyD4I CCNGG 5 cut(s) 379, 380, 895, 3000, 3033
StyI CCWWGG 2 cut(s) 1692, 2674
TaaI ACNGT 2 cut(s) 893, 2893
TaqI TCGA 8 cut(s) 166, 174, 288, 1438, 2667, 2802, 2888, 2909
TaqII GACCGA 2 cut(s) 727, 2288
TatI WGTACW 4 cut(s) 326, 393, 1550, 2147
TauI GCSGC 5 cut(s) 869, 1286, 1724, 1835, 2993
TfiI GAWTC 8 cut(s) 477, 1673, 2015, 2161, 2300, 2350, 2843, 3075
Tru1I TTAA 9 cut(s) 755, 926, 971, 1125, 1661, 1878, 2390, 2637, 2958
Tru9I TTAA 9 cut(s) 755, 926, 971, 1125, 1661, 1878, 2390, 2637, 2958
TseFI GTSAC 2 cut(s) 628, 1595
TseI GCWGC 4 cut(s) 641, 1952, 2771, 2993
Tsp45I GTSAC 2 cut(s) 628, 1595
TspGWI ACGGA 3 cut(s) 1049, 1220, 1266
TspMI CCCGGG 1 cut(s) 380
Van91I CCANNNNNTGG 1 cut(s) 677
Vha464I CTTAAG 1 cut(s) 1660
VneI GTGCAC 1 cut(s) 520
VpaK11BI GGWCC 5 cut(s) 209, 710, 893, 2101, 2970
VspI ATTAAT 1 cut(s) 2637
XapI RAATTY 7 cut(s) 98, 277, 1060, 1370, 1412, 2086, 2248
XbaI TCTAGA 1 cut(s) 601
XceI RCATGY 4 cut(s) 1832, 1895, 2207, 2568
XhoI CTCGAG 1 cut(s) 2801
XmaI CCCGGG 1 cut(s) 380
XmnI GAANNNNTTC 2 cut(s) 960, 2160
ZrmI AGTACT 3 cut(s) 328, 395, 2149
Zsp2I ATGCAT 1 cut(s) 1114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.